Wall clock time and date at job start Tue Mar 31 2020 13:44:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86792 * 120.00289 * 2 1
4 4 H 1.48498 * 109.47254 * 270.00069 * 3 2 1
5 5 H 1.48499 * 109.47069 * 29.99731 * 3 2 1
6 6 H 1.48501 * 109.47349 * 149.99536 * 3 2 1
7 7 C 1.37878 * 119.99872 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00367 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99821 * 0.02562 * 7 2 1
10 10 C 1.53006 * 109.46994 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47150 * 180.02562 * 10 9 7
12 12 H 1.09001 * 109.47204 * 305.00435 * 11 10 9
13 13 N 1.46905 * 109.47034 * 65.00256 * 11 10 9
14 14 C 1.50698 * 109.47049 * 184.99898 * 11 10 9
15 15 O 1.21280 * 120.00486 * 259.99729 * 14 11 10
16 16 N 1.34779 * 119.99940 * 80.00455 * 14 11 10
17 17 C 1.46927 * 120.62939 * 359.71758 * 16 14 11
18 18 C 1.53622 * 108.54434 * 126.37072 * 17 16 14
19 19 C 1.53042 * 109.24201 * 54.85730 * 18 17 16
20 20 C 1.50700 * 109.44809 * 178.49562 * 19 18 17
21 21 N 1.30105 * 126.22780 * 60.08857 * 20 19 18
22 22 N 1.28658 * 109.49961 * 179.97438 * 21 20 19
23 23 C 1.30868 * 109.33934 * 359.97438 * 22 21 20
24 24 O 1.35420 * 126.34883 * 180.02562 * 23 22 21
25 25 O 1.34509 * 107.29999 * 359.77353 * 23 22 21
26 26 C 1.53036 * 109.53707 * 298.51157 * 19 18 17
27 27 C 1.46928 * 120.63189 * 179.97438 * 16 14 11
28 28 H 0.97003 * 120.00086 * 0.02562 * 1 2 3
29 29 H 1.09001 * 109.47034 * 60.00328 * 9 7 2
30 30 H 1.08993 * 109.47708 * 300.00117 * 9 7 2
31 31 H 1.09001 * 109.46854 * 60.00351 * 10 9 7
32 32 H 1.09003 * 109.47122 * 300.00639 * 10 9 7
33 33 H 1.00901 * 110.99869 * 60.00199 * 13 11 10
34 34 H 1.00896 * 110.99543 * 183.95322 * 13 11 10
35 35 H 1.09001 * 109.58510 * 246.20553 * 17 16 14
36 36 H 1.09005 * 109.58615 * 6.62892 * 17 16 14
37 37 H 1.09002 * 109.63480 * 294.86055 * 18 17 16
38 38 H 1.09001 * 109.45728 * 174.74335 * 18 17 16
39 39 H 1.08997 * 109.45995 * 58.53319 * 19 18 17
40 40 H 0.96694 * 113.99808 * 89.97949 * 24 23 22
41 41 H 1.09007 * 109.49957 * 301.41452 * 26 19 18
42 42 H 1.09004 * 109.52718 * 181.33544 * 26 19 18
43 43 H 1.08999 * 109.58863 * 353.37046 * 27 16 14
44 44 H 1.09005 * 109.58301 * 113.65520 * 27 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4967 2.0463 -1.4000
5 1 1.4466 2.6526 0.7000
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6622 0.0005
11 6 1.4801 -4.9871 -0.0001
12 1 0.7876 -5.0073 0.8414
13 7 0.7288 -5.1182 -1.2557
14 6 2.4547 -6.1299 0.1237
15 8 2.7868 -6.7532 -0.8622
16 7 2.9571 -6.4594 1.3302
17 6 2.5689 -5.7099 2.5328
18 6 2.0540 -6.7050 3.5837
19 6 3.1190 -7.7767 3.8280
20 6 2.6337 -8.7345 4.8853
21 7 1.5642 -9.4727 4.8216
22 7 1.4577 -10.1683 5.8987
23 6 2.4627 -9.8961 6.6915
24 8 2.6897 -10.4341 7.9134
25 8 3.2314 -8.9872 6.0653
26 6 3.3825 -8.5417 2.5290
27 6 3.9077 -7.5713 1.4669
28 1 -0.4850 0.8401 -0.0004
29 1 0.6246 -2.5571 -0.8897
30 1 0.6239 -2.5568 0.8902
31 1 2.8717 -3.6044 0.8906
32 1 2.8719 -3.6044 -0.8894
33 1 1.3490 -5.1023 -2.0515
34 1 0.1645 -5.9545 -1.2537
35 1 3.4339 -5.1749 2.9249
36 1 1.7804 -5.0001 2.2823
37 1 1.1392 -7.1764 3.2246
38 1 1.8495 -6.1764 4.5148
39 1 4.0412 -7.3023 4.1635
40 1 3.2251 -11.2391 7.8953
41 1 2.4551 -8.9959 2.1797
42 1 4.1237 -9.3205 2.7088
43 1 4.0028 -8.0902 0.5131
44 1 4.8805 -7.1850 1.7714
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001332157165.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:44:16
Heat of formation + Delta-G solvation = -40.094819 kcal
Electronic energy + Delta-G solvation = -27532.631043 eV
Core-core repulsion = 23487.238897 eV
Total energy + Delta-G solvation = -4045.392146 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 324.163 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-44.68567 -40.44586 -38.67555 -37.91756 -36.71425 -35.33830 -34.02064 -32.83282
-31.49969 -30.32498 -30.08467 -27.02188 -25.94093 -24.22072 -24.05387 -23.53286
-22.75876 -21.15581 -20.27047 -20.01946 -18.99544 -18.21078 -17.54512 -17.19799
-16.38884 -15.96852 -15.83862 -15.66263 -15.53779 -14.92913 -14.57366 -14.40393
-14.34101 -13.98278 -13.40559 -13.35186 -13.09748 -12.94761 -12.64971 -12.38487
-12.35013 -12.10207 -12.01785 -11.69731 -11.52902 -11.42370 -11.26648 -11.09839
-10.91027 -10.68133 -10.54531 -10.12008 -9.89463 -9.81029 -9.38488 -9.02130
-8.80009 -8.36424 -8.21586 -5.95256 -3.97539 0.49428 1.19605 1.83278
2.68907 2.89639 2.97071 3.33784 3.40365 3.42540 3.78891 4.22999
4.24204 4.37438 4.48462 4.61627 4.66403 4.68400 4.74755 4.93907
4.95362 4.98880 5.12807 5.25611 5.30225 5.36247 5.40508 5.45748
5.61166 5.65766 5.70007 5.79090 5.91076 6.31349 6.35403 6.41413
6.63171 7.04668 7.26994 7.48273 7.74012 7.77273 7.78753 7.94078
8.11543 8.21279 8.46545 9.10510 9.65786 11.15562
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.016350 B = 0.002556 C = 0.002353
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1712.165826 B =10953.449198 C =11896.879086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.058 3.942
3 Si 0.888 3.112
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.275 1.275
7 C -0.522 4.522
8 H 0.052 0.948
9 C 0.031 3.969
10 C -0.097 4.097
11 C 0.077 3.923
12 H 0.100 0.900
13 N -0.807 5.807
14 C 0.488 3.512
15 O -0.552 6.552
16 N -0.614 5.614
17 C 0.106 3.894
18 C -0.129 4.129
19 C 0.010 3.990
20 C 0.188 3.812
21 N -0.266 5.266
22 N -0.266 5.266
23 C 0.328 3.672
24 O -0.402 6.402
25 O -0.237 6.237
26 C -0.123 4.123
27 C 0.111 3.889
28 H 0.260 0.740
29 H 0.035 0.965
30 H 0.013 0.987
31 H 0.054 0.946
32 H 0.053 0.947
33 H 0.348 0.652
34 H 0.334 0.666
35 H 0.079 0.921
36 H 0.108 0.892
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.108 0.892
40 H 0.419 0.581
41 H 0.085 0.915
42 H 0.079 0.921
43 H 0.099 0.901
44 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.622 -21.219 12.618 26.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.143 4.143
3 Si 0.716 3.284
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.200 1.200
7 C -0.561 4.561
8 H 0.070 0.930
9 C -0.006 4.006
10 C -0.135 4.135
11 C -0.039 4.039
12 H 0.117 0.883
13 N -0.335 5.335
14 C 0.276 3.724
15 O -0.430 6.430
16 N -0.349 5.349
17 C -0.017 4.017
18 C -0.168 4.168
19 C -0.010 4.010
20 C -0.022 4.022
21 N -0.114 5.114
22 N -0.127 5.127
23 C 0.079 3.921
24 O -0.209 6.209
25 O -0.119 6.119
26 C -0.162 4.162
27 C -0.012 4.012
28 H 0.069 0.931
29 H 0.053 0.947
30 H 0.031 0.969
31 H 0.073 0.927
32 H 0.072 0.928
33 H 0.162 0.838
34 H 0.146 0.854
35 H 0.097 0.903
36 H 0.126 0.874
37 H 0.105 0.895
38 H 0.104 0.896
39 H 0.126 0.874
40 H 0.279 0.721
41 H 0.103 0.897
42 H 0.098 0.902
43 H 0.117 0.883
44 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 6.932 -20.832 12.159 25.097
hybrid contribution 2.515 -0.041 0.803 2.640
sum 9.447 -20.872 12.962 26.324
Atomic orbital electron populations
1.69971 1.05939 1.26437 1.50762 1.24987 0.94795 0.99040 0.95487
0.86662 0.79803 0.83816 0.78083 1.20732 1.21303 1.20028 1.21262
0.92862 0.91290 1.50654 0.93010 1.19015 0.93526 0.89788 0.98234
1.21692 0.98896 0.92120 1.00774 1.21899 0.93592 0.93339 0.95070
0.88269 1.59010 1.26885 1.44340 1.03240 1.22787 0.81884 0.85708
0.82023 1.90637 1.61215 1.54416 1.36701 1.48268 1.45567 1.33187
1.07840 1.21980 1.01966 0.93600 0.84198 1.22151 0.98184 0.95848
1.00567 1.19928 1.00649 0.91752 0.88651 1.27838 0.90743 0.99610
0.84027 1.74487 1.15811 1.06619 1.14475 1.74977 1.19568 1.19655
0.98516 1.24422 0.88074 0.91108 0.88525 1.85029 1.74047 1.45877
1.15899 1.84884 1.48049 1.50165 1.28817 1.22000 1.03542 0.98071
0.92603 1.21516 0.91922 0.87786 0.99935 0.93079 0.94659 0.96874
0.92730 0.92816 0.83827 0.85391 0.90288 0.87394 0.89475 0.89626
0.87419 0.72090 0.89677 0.90240 0.88312 0.91187
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16
4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16
5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16
8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16
9 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16
10 C -0.10 -1.85 4.54 -26.73 -0.12 -1.97 16
11 C 0.08 1.22 2.30 -68.86 -0.16 1.07 16
12 H 0.10 1.49 6.55 -51.93 -0.34 1.15 16
13 N -0.81 -13.26 8.44 -5.65 -0.05 -13.31 16
14 C 0.49 7.27 6.94 -10.99 -0.08 7.19 16
15 O -0.55 -9.68 15.66 5.56 0.09 -9.60 16
16 N -0.61 -7.03 2.97 -172.52 -0.51 -7.54 16
17 C 0.11 1.01 5.61 -3.49 -0.02 0.99 16
18 C -0.13 -1.05 5.36 -26.39 -0.14 -1.19 16
19 C 0.01 0.08 2.62 -91.73 -0.24 -0.16 16
20 C 0.19 1.77 6.98 -13.01 -0.09 1.68 16
21 N -0.27 -3.10 12.21 32.58 0.40 -2.70 16
22 N -0.27 -3.10 12.25 29.24 0.36 -2.74 16
23 C 0.33 2.99 9.79 52.35 0.51 3.51 16
24 O -0.40 -2.32 13.63 -41.05 -0.56 -2.88 16
25 O -0.24 -2.19 10.89 -18.95 -0.21 -2.40 16
26 C -0.12 -0.94 5.34 -26.63 -0.14 -1.08 16
27 C 0.11 1.03 6.43 -3.73 -0.02 1.01 16
28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
29 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16
30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.05 0.97 7.18 -51.93 -0.37 0.60 16
32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
33 H 0.35 5.81 8.58 -39.29 -0.34 5.47 16
34 H 0.33 4.80 9.06 -39.29 -0.36 4.44 16
35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.11 1.16 5.17 -51.93 -0.27 0.89 16
37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16
39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16
40 H 0.42 -0.19 9.06 45.56 0.41 0.23 16
41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
43 H 0.10 1.07 7.01 -51.93 -0.36 0.71 16
44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
LS Contribution 365.22 15.07 5.50 5.50
Total: -1.00 -35.55 365.22 -5.69 -41.24
By element:
Atomic # 1 Polarization: 10.64 SS G_CDS: -5.37 Total: 5.27 kcal
Atomic # 6 Polarization: -0.42 SS G_CDS: -1.05 Total: -1.47 kcal
Atomic # 7 Polarization: -52.97 SS G_CDS: 0.93 Total: -52.04 kcal
Atomic # 8 Polarization: -14.19 SS G_CDS: -0.68 Total: -14.87 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -35.55 -5.69 -41.24 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332157165.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.146 kcal
(2) G-P(sol) polarization free energy of solvation -35.555 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.409 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.095 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds