Wall clock time and date at job start Tue Mar 31 2020 14:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38673 * 120.41922 * 2 1 4 4 C 1.38627 * 118.42076 * 180.24040 * 3 2 1 5 5 C 1.38230 * 119.15958 * 359.76367 * 4 3 2 6 6 N 1.31850 * 120.76207 * 359.97438 * 5 4 3 7 7 C 1.31879 * 121.72870 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.61712 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46745 * 90.00150 * 8 7 6 10 10 N 1.46497 * 109.47098 * 180.02562 * 9 8 7 11 11 C 1.34782 * 120.00068 * 180.02562 * 10 9 8 12 12 O 1.21276 * 119.99900 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99714 * 179.97438 * 11 10 9 14 14 H 1.08996 * 109.47138 * 59.99870 * 13 11 10 15 15 C 1.50692 * 109.47016 * 299.99830 * 13 11 10 16 16 H 1.08001 * 120.00119 * 324.87726 * 15 13 11 17 17 C 1.37876 * 120.00247 * 144.88510 * 15 13 11 18 18 N 1.31514 * 119.99645 * 5.18949 * 17 15 13 19 19 Si 1.86802 * 120.00406 * 185.19282 * 17 15 13 20 20 H 1.48497 * 109.46820 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47062 * 119.99738 * 19 17 15 22 22 H 1.48502 * 109.46857 * 239.99929 * 19 17 15 23 23 C 1.50700 * 109.46512 * 179.97438 * 13 11 10 24 24 C 1.38237 * 120.00184 * 66.01651 * 23 13 11 25 25 C 1.38231 * 120.00058 * 179.80653 * 24 23 13 26 26 C 1.38238 * 120.00087 * 0.39330 * 25 24 23 27 27 C 1.38231 * 119.99614 * 359.86070 * 26 25 24 28 28 C 1.38234 * 120.00576 * 359.95193 * 27 26 25 29 29 H 1.09001 * 109.46541 * 270.24764 * 1 2 3 30 30 H 1.08998 * 109.47403 * 30.24495 * 1 2 3 31 31 H 1.08994 * 109.47268 * 150.24800 * 1 2 3 32 32 H 1.08003 * 120.78902 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.41999 * 179.72555 * 4 3 2 34 34 H 1.08003 * 119.61207 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47138 * 330.00305 * 8 7 6 36 36 H 1.08999 * 109.47281 * 209.99573 * 8 7 6 37 37 H 1.09006 * 109.47165 * 60.00190 * 9 8 7 38 38 H 1.08996 * 109.47463 * 299.99929 * 9 8 7 39 39 H 0.97004 * 120.00377 * 359.97438 * 10 9 8 40 40 H 0.97005 * 120.00553 * 179.97438 * 18 17 15 41 41 H 1.08005 * 119.99598 * 359.97438 * 24 23 13 42 42 H 1.08005 * 119.99717 * 180.23165 * 25 24 23 43 43 H 1.07992 * 120.00071 * 179.83173 * 26 25 24 44 44 H 1.07998 * 119.99802 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00496 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 -0.0051 5 6 4.2256 -0.0824 -0.0050 6 7 3.5254 -1.1996 0.0003 7 6 2.2067 -1.1916 0.0053 8 6 1.4539 -2.4972 0.0108 9 6 1.2047 -2.9360 1.4551 10 7 0.4735 -4.2055 1.4605 11 6 0.1410 -4.7867 2.6302 12 8 0.4475 -4.2590 3.6783 13 6 -0.6117 -6.0924 2.6357 14 1 -0.0239 -6.8527 2.1215 15 6 -1.9310 -5.9146 1.9295 16 1 -2.4668 -4.9806 2.0132 17 6 -2.4542 -6.9442 1.1765 18 7 -1.8548 -8.1147 1.1566 19 14 -4.0142 -6.6769 0.1844 20 1 -4.4896 -5.2831 0.3757 21 1 -3.7320 -6.9111 -1.2546 22 1 -5.0615 -7.6241 0.6441 23 6 -0.8571 -6.5246 4.0583 24 6 -1.6875 -5.7788 4.8739 25 6 -1.9157 -6.1776 6.1776 26 6 -1.3071 -7.3176 6.6684 27 6 -0.4726 -8.0605 5.8544 28 6 -0.2474 -7.6640 4.5495 29 1 -0.3632 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5176 31 1 -0.3633 -0.8921 -0.5099 32 1 1.6890 2.1423 -0.0004 33 1 4.1735 2.0592 -0.0097 34 1 5.3046 -0.1285 -0.0086 35 1 2.0415 -3.2575 -0.5037 36 1 0.4995 -2.3685 -0.4997 37 1 0.6170 -2.1757 1.9697 38 1 2.1590 -3.0648 1.9656 39 1 0.2280 -4.6274 0.6223 40 1 -2.2230 -8.8393 0.6272 41 1 -2.1600 -4.8861 4.4916 42 1 -2.5674 -5.5969 6.8137 43 1 -1.4833 -7.6276 7.6877 44 1 0.0032 -8.9510 6.2379 45 1 0.4043 -8.2446 3.9134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361692933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:54 Heat of formation + Delta-G solvation = 6.102814 kcal Electronic energy + Delta-G solvation = -26322.820361 eV Core-core repulsion = 22690.280758 eV Total energy + Delta-G solvation = -3632.539604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53107 -39.08402 -37.70887 -35.20147 -33.70728 -33.62276 -32.61512 -31.06510 -29.89587 -29.37176 -27.52460 -27.01550 -24.38745 -23.45226 -22.46379 -21.56290 -21.34245 -20.72271 -19.23618 -16.98331 -16.82872 -16.48086 -16.12917 -15.79607 -15.42366 -14.91621 -14.62718 -14.49409 -14.33422 -14.03352 -13.74341 -13.31295 -13.25835 -12.96431 -12.88281 -12.72125 -12.61566 -12.40032 -12.19963 -11.80550 -11.64817 -11.58236 -11.46203 -11.07893 -11.02101 -10.90953 -10.38553 -10.23164 -9.98917 -9.85980 -9.54034 -9.39334 -8.92766 -8.77264 -8.58518 -8.30487 -7.90424 -7.56495 -6.26652 -4.33088 0.94457 1.13026 2.42007 2.44726 3.17555 3.27153 3.29886 3.58963 3.75572 3.94679 4.28293 4.31783 4.60491 4.65984 4.75654 4.85255 4.88609 5.10198 5.19410 5.21193 5.28195 5.42965 5.48610 5.56285 5.75613 5.75752 5.82742 5.89598 5.91253 5.93284 6.07826 6.12570 6.23714 6.26260 6.42377 6.53774 6.58873 6.64244 6.89422 7.01444 7.18180 7.25288 7.40879 7.48734 7.63858 7.78587 7.89417 7.99295 8.10399 8.41129 8.71581 9.26920 9.33687 10.81674 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003302 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.877735 B = 8477.552641 C = 9819.817636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.129 4.129 3 C -0.078 4.078 4 C -0.177 4.177 5 C 0.093 3.907 6 N -0.476 5.476 7 C 0.138 3.862 8 C -0.088 4.088 9 C 0.133 3.867 10 N -0.730 5.730 11 C 0.527 3.473 12 O -0.568 6.568 13 C 0.050 3.950 14 H 0.089 0.911 15 C -0.514 4.514 16 H 0.063 0.937 17 C 0.073 3.927 18 N -0.877 5.877 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.008 4.008 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.405 0.595 40 H 0.266 0.734 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 13.227 -3.544 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.131 4.131 3 C -0.104 4.104 4 C -0.197 4.197 5 C -0.064 4.064 6 N -0.184 5.184 7 C 0.000 4.000 8 C -0.126 4.126 9 C 0.008 3.992 10 N -0.383 5.383 11 C 0.317 3.683 12 O -0.446 6.446 13 C 0.029 3.971 14 H 0.107 0.893 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.513 5.513 19 Si 0.724 3.276 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.009 4.009 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.136 4.136 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.240 0.760 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.861 12.611 -2.879 14.642 hybrid contribution -1.354 0.740 -0.938 1.806 sum 5.507 13.351 -3.817 14.938 Atomic orbital electron populations 1.20870 0.89994 1.03344 1.03216 1.20778 0.97778 0.93519 1.01049 1.21473 0.94173 0.98025 0.96696 1.22110 0.95288 0.99586 1.02687 1.22726 1.00262 0.87657 0.95758 1.67512 1.07760 1.31525 1.11643 1.20946 0.89576 0.94467 0.95046 1.20814 1.00075 0.93371 0.98296 1.20987 0.96888 0.86947 0.94335 1.45892 1.59087 1.23256 1.10047 1.21646 0.76888 0.87560 0.82201 1.90583 1.55662 1.66405 1.31993 1.18123 0.97135 0.90656 0.91175 0.89349 1.20722 1.04110 1.00505 1.29801 0.91867 1.24976 0.97306 0.94821 0.96037 1.69931 1.39829 1.01916 1.39574 0.86451 0.82870 0.78597 0.79684 1.19504 1.20696 1.20839 1.20019 0.92704 0.93058 0.95144 1.20812 0.97535 0.99131 0.92878 1.20945 1.00895 0.97358 0.96120 1.20786 1.00173 0.96911 0.98898 1.20896 0.99928 0.99559 0.94642 1.20988 1.00369 0.97434 0.94820 0.90402 0.91438 0.90353 0.84951 0.84962 0.82853 0.89206 0.89065 0.92301 0.92004 0.75970 0.92415 0.87182 0.87651 0.87761 0.87594 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.62 36.01 0.35 -0.75 16 2 C -0.13 -1.42 5.90 -104.48 -0.62 -2.04 16 3 C -0.08 -0.73 9.86 -39.28 -0.39 -1.12 16 4 C -0.18 -1.59 10.11 -39.44 -0.40 -1.98 16 5 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 6 N -0.48 -6.39 10.27 -9.47 -0.10 -6.49 16 7 C 0.14 1.77 6.03 -82.59 -0.50 1.27 16 8 C -0.09 -1.11 5.22 -27.88 -0.15 -1.26 16 9 C 0.13 2.12 5.66 -4.04 -0.02 2.10 16 10 N -0.73 -13.36 5.46 -60.29 -0.33 -13.69 16 11 C 0.53 11.80 7.04 -10.98 -0.08 11.72 16 12 O -0.57 -14.06 15.41 5.56 0.09 -13.97 16 13 C 0.05 1.19 2.38 -94.08 -0.22 0.97 16 14 H 0.09 2.22 7.12 -51.93 -0.37 1.85 16 15 C -0.51 -12.68 7.47 -34.44 -0.26 -12.94 16 16 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 17 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 18 N -0.88 -22.98 12.84 55.43 0.71 -22.27 16 19 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.01 -0.20 4.30 -104.62 -0.45 -0.65 16 24 C -0.09 -1.95 8.31 -39.58 -0.33 -2.28 16 25 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.15 -2.85 10.05 -39.58 -0.40 -3.24 16 27 C -0.13 -2.62 10.05 -39.59 -0.40 -3.01 16 28 C -0.12 -2.63 9.67 -39.58 -0.38 -3.01 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.08 0.73 5.95 -51.93 -0.31 0.42 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.41 6.91 8.36 -40.82 -0.34 6.57 16 40 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 41 H 0.11 2.53 7.90 -52.48 -0.41 2.12 16 42 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.11 2.40 7.96 -52.49 -0.42 1.98 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -30.65 381.55 -10.18 -40.83 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.35 Total: 12.11 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -4.93 Total: -16.82 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.29 Total: -42.45 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.65 -10.18 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361692933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.936 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds