Wall clock time and date at job start Tue Mar 31 2020 14:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38673 * 120.41922 * 2 1 4 4 C 1.38627 * 118.42076 * 180.24040 * 3 2 1 5 5 C 1.38230 * 119.15958 * 359.76367 * 4 3 2 6 6 N 1.31850 * 120.76207 * 359.97438 * 5 4 3 7 7 C 1.31879 * 121.72870 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.61712 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46745 * 90.00150 * 8 7 6 10 10 N 1.46497 * 109.47098 * 180.02562 * 9 8 7 11 11 C 1.34782 * 120.00068 * 180.02562 * 10 9 8 12 12 O 1.21276 * 119.99900 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99714 * 179.97438 * 11 10 9 14 14 H 1.08996 * 109.47138 * 59.99870 * 13 11 10 15 15 C 1.50692 * 109.47016 * 299.99830 * 13 11 10 16 16 H 1.08001 * 120.00119 * 324.87726 * 15 13 11 17 17 C 1.37876 * 120.00247 * 144.88510 * 15 13 11 18 18 N 1.31514 * 119.99645 * 5.18949 * 17 15 13 19 19 Si 1.86802 * 120.00406 * 185.19282 * 17 15 13 20 20 H 1.48497 * 109.46820 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47062 * 119.99738 * 19 17 15 22 22 H 1.48502 * 109.46857 * 239.99929 * 19 17 15 23 23 C 1.50700 * 109.46512 * 179.97438 * 13 11 10 24 24 C 1.38237 * 120.00184 * 66.01651 * 23 13 11 25 25 C 1.38231 * 120.00058 * 179.80653 * 24 23 13 26 26 C 1.38238 * 120.00087 * 0.39330 * 25 24 23 27 27 C 1.38231 * 119.99614 * 359.86070 * 26 25 24 28 28 C 1.38234 * 120.00576 * 359.95193 * 27 26 25 29 29 H 1.09001 * 109.46541 * 270.24764 * 1 2 3 30 30 H 1.08998 * 109.47403 * 30.24495 * 1 2 3 31 31 H 1.08994 * 109.47268 * 150.24800 * 1 2 3 32 32 H 1.08003 * 120.78902 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.41999 * 179.72555 * 4 3 2 34 34 H 1.08003 * 119.61207 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47138 * 330.00305 * 8 7 6 36 36 H 1.08999 * 109.47281 * 209.99573 * 8 7 6 37 37 H 1.09006 * 109.47165 * 60.00190 * 9 8 7 38 38 H 1.08996 * 109.47463 * 299.99929 * 9 8 7 39 39 H 0.97004 * 120.00377 * 359.97438 * 10 9 8 40 40 H 0.97005 * 120.00553 * 179.97438 * 18 17 15 41 41 H 1.08005 * 119.99598 * 359.97438 * 24 23 13 42 42 H 1.08005 * 119.99717 * 180.23165 * 25 24 23 43 43 H 1.07992 * 120.00071 * 179.83173 * 26 25 24 44 44 H 1.07998 * 119.99802 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00496 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 -0.0051 5 6 4.2256 -0.0824 -0.0050 6 7 3.5254 -1.1996 0.0003 7 6 2.2067 -1.1916 0.0053 8 6 1.4539 -2.4972 0.0108 9 6 1.2047 -2.9360 1.4551 10 7 0.4735 -4.2055 1.4605 11 6 0.1410 -4.7867 2.6302 12 8 0.4475 -4.2590 3.6783 13 6 -0.6117 -6.0924 2.6357 14 1 -0.0239 -6.8527 2.1215 15 6 -1.9310 -5.9146 1.9295 16 1 -2.4668 -4.9806 2.0132 17 6 -2.4542 -6.9442 1.1765 18 7 -1.8548 -8.1147 1.1566 19 14 -4.0142 -6.6769 0.1844 20 1 -4.4896 -5.2831 0.3757 21 1 -3.7320 -6.9111 -1.2546 22 1 -5.0615 -7.6241 0.6441 23 6 -0.8571 -6.5246 4.0583 24 6 -1.6875 -5.7788 4.8739 25 6 -1.9157 -6.1776 6.1776 26 6 -1.3071 -7.3176 6.6684 27 6 -0.4726 -8.0605 5.8544 28 6 -0.2474 -7.6640 4.5495 29 1 -0.3632 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5176 31 1 -0.3633 -0.8921 -0.5099 32 1 1.6890 2.1423 -0.0004 33 1 4.1735 2.0592 -0.0097 34 1 5.3046 -0.1285 -0.0086 35 1 2.0415 -3.2575 -0.5037 36 1 0.4995 -2.3685 -0.4997 37 1 0.6170 -2.1757 1.9697 38 1 2.1590 -3.0648 1.9656 39 1 0.2280 -4.6274 0.6223 40 1 -2.2230 -8.8393 0.6272 41 1 -2.1600 -4.8861 4.4916 42 1 -2.5674 -5.5969 6.8137 43 1 -1.4833 -7.6276 7.6877 44 1 0.0032 -8.9510 6.2379 45 1 0.4043 -8.2446 3.9134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361692933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:53 Heat of formation + Delta-G solvation = -10.710953 kcal Electronic energy + Delta-G solvation = -26323.549461 eV Core-core repulsion = 22690.280758 eV Total energy + Delta-G solvation = -3633.268703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38751 -40.78793 -39.34287 -36.51903 -35.50242 -34.58495 -33.73178 -32.85635 -31.53066 -30.54064 -28.97489 -28.03331 -26.00274 -24.84087 -23.33180 -23.20130 -22.41259 -22.24158 -20.92345 -18.67143 -17.89797 -17.76506 -17.58813 -17.26851 -16.77282 -16.31006 -16.10045 -15.75274 -15.62867 -15.49885 -15.14748 -14.67792 -14.44778 -14.13570 -14.04423 -13.93045 -13.81663 -13.66141 -13.49118 -13.35948 -13.26799 -12.90155 -12.82870 -12.74021 -12.48758 -12.16208 -12.00846 -11.92543 -11.66664 -11.24785 -10.68529 -10.65522 -10.49163 -10.33664 -9.92318 -9.73016 -9.55365 -9.24962 -8.18986 -6.31198 0.13576 0.35619 0.76206 0.81154 1.43751 1.47339 1.57640 1.95072 2.43270 2.46779 2.83746 3.09804 3.26976 3.42199 3.77292 3.92288 3.96199 4.02395 4.13746 4.22484 4.24075 4.30396 4.40350 4.42591 4.50895 4.56425 4.62015 4.73213 4.78940 4.82423 4.87536 4.90124 4.97779 4.99851 5.11471 5.23289 5.27167 5.37381 5.37845 5.45662 5.64370 5.67420 5.78807 5.82653 5.83456 5.96234 6.24438 6.41344 6.72080 6.80362 7.06712 7.36151 7.54092 8.89418 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003302 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.877735 B = 8477.552641 C = 9819.817636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.167 4.167 5 C 0.076 3.924 6 N -0.511 5.511 7 C 0.110 3.890 8 C -0.075 4.075 9 C 0.142 3.858 10 N -0.717 5.717 11 C 0.526 3.474 12 O -0.595 6.595 13 C 0.053 3.947 14 H 0.066 0.934 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.033 3.967 18 N -0.906 5.906 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.288 1.288 23 C -0.038 4.038 24 C -0.111 4.111 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.130 4.130 28 C -0.144 4.144 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.412 0.588 40 H 0.267 0.733 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 14.780 -3.258 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.139 4.139 3 C -0.107 4.107 4 C -0.186 4.186 5 C -0.081 4.081 6 N -0.220 5.220 7 C -0.028 4.028 8 C -0.113 4.113 9 C 0.017 3.983 10 N -0.368 5.368 11 C 0.315 3.685 12 O -0.477 6.477 13 C 0.031 3.969 14 H 0.084 0.916 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.168 4.168 18 N -0.543 5.543 19 Si 0.782 3.218 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.214 1.214 23 C -0.039 4.039 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.148 4.148 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.185 0.815 34 H 0.192 0.808 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.350 14.179 -2.628 15.757 hybrid contribution -1.100 0.313 -0.958 1.492 sum 5.250 14.493 -3.586 15.826 Atomic orbital electron populations 1.20894 0.89082 1.04308 1.03056 1.20998 0.98593 0.93581 1.00745 1.21897 0.94609 0.98581 0.95593 1.22504 0.95492 1.00192 1.00434 1.23209 1.01370 0.87786 0.95728 1.67439 1.08334 1.33389 1.12832 1.20916 0.89792 0.94793 0.97286 1.20674 1.01033 0.93872 0.95744 1.20988 0.95256 0.85374 0.96657 1.45802 1.58070 1.23794 1.09170 1.21471 0.76882 0.87371 0.82806 1.90547 1.56972 1.67052 1.33134 1.18015 0.96660 0.90642 0.91545 0.91621 1.20776 1.04399 1.00174 1.29909 0.92612 1.25627 0.99909 0.94453 0.96860 1.70037 1.41232 1.02595 1.40450 0.85520 0.79243 0.78362 0.78656 1.18977 1.19684 1.21440 1.20141 0.94117 0.94236 0.95371 1.20856 0.98451 0.99161 0.94468 1.21333 1.00834 0.97965 0.95201 1.21271 0.98558 0.95759 1.00608 1.21302 0.99521 1.00507 0.93473 1.21145 1.01141 0.97474 0.96428 0.91034 0.89201 0.90699 0.81993 0.81535 0.80802 0.89573 0.87482 0.92749 0.93926 0.75221 0.92399 0.88589 0.84586 0.83504 0.84283 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.62 71.24 0.69 -1.35 16 2 C -0.14 -2.87 5.90 -19.77 -0.12 -2.99 16 3 C -0.08 -1.33 9.86 22.47 0.22 -1.11 16 4 C -0.17 -2.57 10.11 22.36 0.23 -2.34 16 5 C 0.08 1.53 11.18 84.69 0.95 2.48 16 6 N -0.51 -13.79 10.27 -183.88 -1.89 -15.68 16 7 C 0.11 2.82 6.03 42.54 0.26 3.08 16 8 C -0.08 -1.96 5.22 29.85 0.16 -1.81 16 9 C 0.14 4.70 5.66 86.38 0.49 5.19 16 10 N -0.72 -27.44 5.46 -463.05 -2.53 -29.96 16 11 C 0.53 24.65 7.04 87.66 0.62 25.27 16 12 O -0.60 -30.80 15.41 -3.02 -0.05 -30.85 16 13 C 0.05 2.62 2.38 -13.03 -0.03 2.59 16 14 H 0.07 3.52 7.12 -2.39 -0.02 3.50 16 15 C -0.51 -26.22 7.47 25.60 0.19 -26.03 16 16 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 17 C 0.03 1.70 5.45 84.65 0.46 2.16 16 18 N -0.91 -48.67 12.84 21.45 0.28 -48.40 16 19 Si 0.96 40.41 29.54 68.60 2.03 42.43 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 23 C -0.04 -1.86 4.30 -19.86 -0.09 -1.94 16 24 C -0.11 -5.18 8.31 22.27 0.18 -4.99 16 25 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 26 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 27 C -0.13 -4.95 10.05 22.27 0.22 -4.73 16 28 C -0.14 -6.55 9.67 22.27 0.22 -6.33 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.13 8.10 -2.39 -0.02 1.12 16 31 H 0.07 1.33 5.95 -2.39 -0.01 1.32 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.11 2.39 5.93 -2.39 -0.01 2.37 16 37 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 14.62 8.36 -92.70 -0.77 13.85 16 40 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 41 H 0.10 4.60 7.90 -2.91 -0.02 4.57 16 42 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 43 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.11 4.77 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -68.50 381.55 3.15 -65.34 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: 0.22 Total: 39.87 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 5.09 Total: -22.75 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -4.14 Total: -94.04 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.05 Total: -30.85 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Total: -68.50 3.15 -65.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361692933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.632 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds