Wall clock time and date at job start Tue Mar 31 2020 13:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00002 * 2 1 4 4 H 1.48499 * 109.46881 * 269.99334 * 3 2 1 5 5 H 1.48501 * 109.47281 * 29.99580 * 3 2 1 6 6 H 1.48507 * 109.46770 * 149.99667 * 3 2 1 7 7 C 1.37875 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99751 * 179.73006 * 7 2 1 9 9 C 1.50702 * 120.00275 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47307 * 179.72109 * 9 7 2 11 11 C 1.34966 * 125.97787 * 125.00303 * 10 9 7 12 12 C 1.35235 * 107.86190 * 180.02562 * 11 10 9 13 13 C 1.40405 * 107.86890 * 0.02562 * 12 11 10 14 14 N 1.40196 * 125.97252 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99822 * 359.97438 * 14 13 12 16 16 O 1.21590 * 120.00532 * 354.79275 * 15 14 13 17 17 N 1.34779 * 119.99736 * 174.78735 * 15 14 13 18 18 C 1.46935 * 120.63096 * 4.74525 * 17 15 14 19 19 C 1.52765 * 109.00660 * 233.58472 * 18 17 15 20 20 C 1.53036 * 109.38119 * 305.58630 * 19 18 17 21 21 H 1.09005 * 109.45739 * 181.26178 * 20 19 18 22 22 O 1.42905 * 109.46151 * 301.22031 * 20 19 18 23 23 C 1.53041 * 109.53852 * 61.24078 * 20 19 18 24 24 H 1.09005 * 109.52225 * 58.60750 * 23 20 19 25 25 C 1.53005 * 109.49616 * 178.67880 * 23 20 19 26 26 O 1.42896 * 109.47017 * 184.83764 * 25 23 20 27 27 C 1.46925 * 120.63291 * 185.02378 * 17 15 14 28 28 N 1.31211 * 108.05001 * 359.71668 * 13 12 11 29 29 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47105 * 299.72448 * 9 7 2 31 31 H 1.09007 * 109.46920 * 59.72675 * 9 7 2 32 32 H 1.08004 * 126.06503 * 359.97438 * 11 10 9 33 33 H 1.08001 * 126.06780 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99924 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.57930 * 353.41572 * 18 17 15 36 36 H 1.08990 * 109.58552 * 113.84144 * 18 17 15 37 37 H 1.08999 * 109.56017 * 185.54785 * 19 18 17 38 38 H 1.09000 * 109.38490 * 65.51665 * 19 18 17 39 39 H 0.96698 * 114.00195 * 300.07163 * 22 20 19 40 40 H 1.08998 * 109.47622 * 304.84380 * 25 23 20 41 41 H 1.09003 * 109.46760 * 64.83950 * 25 23 20 42 42 H 0.96699 * 113.99960 * 179.97438 * 26 25 23 43 43 H 1.08997 * 109.58887 * 246.15840 * 27 17 15 44 44 H 1.08995 * 109.58428 * 6.43967 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 -0.0039 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 -0.0056 11 6 2.2454 -4.6245 0.8867 12 6 3.2630 -5.4436 0.5369 13 6 3.8674 -4.9126 -0.6138 14 7 4.9611 -5.4619 -1.2976 15 6 5.5272 -6.6029 -0.8572 16 8 5.1519 -7.1052 0.1846 17 7 6.5093 -7.1874 -1.5716 18 6 7.0450 -6.5401 -2.7770 19 6 6.9713 -7.5231 -3.9441 20 6 7.6823 -8.8225 -3.5593 21 1 7.6499 -9.5165 -4.3992 22 8 9.0433 -8.5403 -3.2273 23 6 6.9826 -9.4505 -2.3517 24 1 5.9380 -9.6438 -2.5958 25 6 7.6739 -10.7662 -1.9883 26 8 6.9533 -11.4075 -0.9340 27 6 7.0603 -8.4868 -1.1635 28 7 3.2254 -3.8161 -0.9411 29 1 -0.4850 0.8400 -0.0004 30 1 0.6278 -2.5589 0.8927 31 1 0.6210 -2.5550 -0.8873 32 1 1.5845 -4.7560 1.7307 33 1 3.5588 -6.3457 1.0517 34 1 5.3109 -5.0202 -2.0872 35 1 6.4539 -5.6542 -3.0093 36 1 8.0833 -6.2551 -2.6079 37 1 7.4557 -7.0884 -4.8185 38 1 5.9270 -7.7340 -4.1741 39 1 9.5489 -8.1398 -3.9477 40 1 7.6969 -11.4180 -2.8616 41 1 8.6932 -10.5625 -1.6601 42 1 7.3355 -12.2497 -0.6520 43 1 8.0999 -8.3639 -0.8601 44 1 6.4809 -8.8838 -0.3299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364085708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:33 Heat of formation + Delta-G solvation = -33.219195 kcal Electronic energy + Delta-G solvation = -27551.293420 eV Core-core repulsion = 23506.199423 eV Total energy + Delta-G solvation = -4045.093997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95602 -40.12493 -38.76014 -36.95946 -35.62441 -34.77183 -33.37160 -32.43253 -31.51409 -30.73785 -29.22744 -26.84969 -26.08979 -25.44987 -23.00831 -22.69093 -21.50067 -20.54222 -20.03504 -19.17750 -18.02929 -17.67795 -17.38621 -16.65501 -16.52221 -15.89727 -15.61444 -15.40596 -15.07016 -14.95466 -14.45531 -14.30966 -14.09281 -13.92978 -13.74854 -13.27909 -12.91333 -12.73782 -12.50342 -12.28789 -12.08268 -12.05480 -11.77525 -11.67796 -11.28679 -11.00700 -10.87377 -10.85525 -10.45179 -10.35546 -10.26226 -10.22737 -9.99745 -9.60543 -9.44593 -8.77207 -8.60371 -8.04056 -7.34995 -6.21530 -4.26367 2.37985 2.71944 3.15640 3.25371 3.30966 3.36068 3.44736 3.67912 3.79926 3.89627 4.12351 4.27478 4.35328 4.45933 4.54526 4.63731 4.88615 5.02246 5.06518 5.09646 5.13410 5.21601 5.27239 5.35093 5.52395 5.56013 5.62915 5.80904 5.87183 5.98071 6.22057 6.40873 6.60382 6.70357 6.89681 7.02488 7.13156 7.16815 7.31644 7.55462 7.72675 7.84664 7.99442 8.11843 8.64543 8.71291 8.84517 9.39030 10.87122 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023772 B = 0.002453 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.585131 B =11409.761243 C =12179.552939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.645 5.645 15 C 0.716 3.284 16 O -0.563 6.563 17 N -0.627 5.627 18 C 0.113 3.887 19 C -0.169 4.169 20 C 0.113 3.887 21 H 0.060 0.940 22 O -0.561 6.561 23 C -0.096 4.096 24 H 0.093 0.907 25 C 0.087 3.913 26 O -0.571 6.571 27 C 0.147 3.853 28 N -0.309 5.309 29 H 0.267 0.733 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.378 0.622 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.380 0.620 43 H 0.071 0.929 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.330 -20.661 -8.949 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.297 5.297 15 C 0.417 3.583 16 O -0.438 6.438 17 N -0.365 5.365 18 C -0.010 4.010 19 C -0.207 4.207 20 C 0.054 3.946 21 H 0.078 0.922 22 O -0.367 6.367 23 C -0.115 4.115 24 H 0.112 0.888 25 C 0.009 3.991 26 O -0.376 6.376 27 C 0.024 3.976 28 N -0.141 5.141 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.242 0.758 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.226 0.774 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.227 0.773 43 H 0.090 0.910 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.147 -19.556 -8.488 26.743 hybrid contribution 1.097 0.368 -0.601 1.304 sum 17.244 -19.188 -9.089 27.352 Atomic orbital electron populations 1.69922 1.06027 1.27568 1.49913 1.24947 0.94984 0.99528 0.94674 0.86328 0.79685 0.82166 0.78315 1.20386 1.20996 1.19719 1.21270 0.94001 0.89415 1.51840 0.91326 1.19720 0.85634 0.81305 0.99199 1.49037 1.23630 1.19671 1.17995 1.22543 1.00309 0.90183 0.96839 1.21508 1.01943 1.06444 1.01811 1.18809 0.90611 0.94109 0.94305 1.41605 1.31666 1.25116 1.31329 1.15525 0.79339 0.80119 0.83291 1.90864 1.64829 1.65172 1.22913 1.47200 1.38808 1.22415 1.28066 1.21467 1.00135 0.95051 0.84366 1.22557 1.02798 0.96867 0.98504 1.21675 0.81924 0.94880 0.96115 0.92203 1.86534 1.22156 1.84576 1.43420 1.21571 1.00377 0.94156 0.95439 0.88835 1.22046 0.94913 0.92450 0.89705 1.86523 1.55977 1.39814 1.55325 1.21341 0.99418 0.80223 0.96647 1.77302 1.04140 1.16431 1.16179 0.92366 0.92552 0.93804 0.81534 0.82228 0.75850 0.90335 0.90450 0.89905 0.90094 0.77419 0.93665 0.92501 0.77312 0.91045 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.87 9.24 -34.44 -0.32 -15.19 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.70 6.26 -5.19 -0.03 6.67 16 10 N -0.32 -7.69 3.67 -62.56 -0.23 -7.92 16 11 C 0.05 1.07 11.44 -17.24 -0.20 0.87 16 12 C -0.29 -5.99 9.61 -39.84 -0.38 -6.38 16 13 C 0.28 5.82 8.11 -154.36 -1.25 4.57 16 14 N -0.64 -10.86 5.36 -15.50 -0.08 -10.95 16 15 C 0.72 11.74 8.26 -86.92 -0.72 11.03 16 16 O -0.56 -11.09 12.93 5.29 0.07 -11.02 16 17 N -0.63 -7.58 2.98 -178.76 -0.53 -8.11 16 18 C 0.11 0.95 6.17 -3.93 -0.02 0.93 16 19 C -0.17 -1.02 5.79 -26.83 -0.16 -1.17 16 20 C 0.11 0.68 3.19 -26.69 -0.09 0.60 16 21 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 22 O -0.56 -3.23 11.52 -35.23 -0.41 -3.63 16 23 C -0.10 -0.82 2.41 -90.50 -0.22 -1.04 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 25 C 0.09 0.64 6.23 37.16 0.23 0.87 16 26 O -0.57 -4.91 13.31 -35.23 -0.47 -5.38 16 27 C 0.15 1.66 5.30 -3.71 -0.02 1.64 16 28 N -0.31 -7.33 12.42 31.44 0.39 -6.94 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.17 2.84 8.06 -52.48 -0.42 2.42 16 33 H 0.16 3.32 5.93 -52.49 -0.31 3.01 16 34 H 0.40 5.64 6.28 -40.82 -0.26 5.38 16 35 H 0.08 0.64 5.57 -51.93 -0.29 0.35 16 36 H 0.08 0.59 7.81 -51.93 -0.41 0.18 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.38 0.71 9.08 45.56 0.41 1.12 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.41 7.86 -51.93 -0.41 0.00 16 42 H 0.38 1.49 9.12 45.56 0.42 1.90 16 43 H 0.07 0.79 7.81 -51.93 -0.41 0.39 16 44 H 0.10 1.43 6.88 -51.93 -0.36 1.07 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -36.04 361.23 -7.90 -43.94 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.53 Total: 7.87 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.27 Total: 5.00 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.28 Total: -58.77 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.81 Total: -20.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.04 -7.90 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364085708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.718 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds