Wall clock time and date at job start Tue Mar 31 2020 13:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00002 * 2 1 4 4 H 1.48499 * 109.46881 * 269.99334 * 3 2 1 5 5 H 1.48501 * 109.47281 * 29.99580 * 3 2 1 6 6 H 1.48507 * 109.46770 * 149.99667 * 3 2 1 7 7 C 1.37875 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99751 * 179.73006 * 7 2 1 9 9 C 1.50702 * 120.00275 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47307 * 179.72109 * 9 7 2 11 11 C 1.34966 * 125.97787 * 125.00303 * 10 9 7 12 12 C 1.35235 * 107.86190 * 180.02562 * 11 10 9 13 13 C 1.40405 * 107.86890 * 0.02562 * 12 11 10 14 14 N 1.40196 * 125.97252 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99822 * 359.97438 * 14 13 12 16 16 O 1.21590 * 120.00532 * 354.79275 * 15 14 13 17 17 N 1.34779 * 119.99736 * 174.78735 * 15 14 13 18 18 C 1.46935 * 120.63096 * 4.74525 * 17 15 14 19 19 C 1.52765 * 109.00660 * 233.58472 * 18 17 15 20 20 C 1.53036 * 109.38119 * 305.58630 * 19 18 17 21 21 H 1.09005 * 109.45739 * 181.26178 * 20 19 18 22 22 O 1.42905 * 109.46151 * 301.22031 * 20 19 18 23 23 C 1.53041 * 109.53852 * 61.24078 * 20 19 18 24 24 H 1.09005 * 109.52225 * 58.60750 * 23 20 19 25 25 C 1.53005 * 109.49616 * 178.67880 * 23 20 19 26 26 O 1.42896 * 109.47017 * 184.83764 * 25 23 20 27 27 C 1.46925 * 120.63291 * 185.02378 * 17 15 14 28 28 N 1.31211 * 108.05001 * 359.71668 * 13 12 11 29 29 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47105 * 299.72448 * 9 7 2 31 31 H 1.09007 * 109.46920 * 59.72675 * 9 7 2 32 32 H 1.08004 * 126.06503 * 359.97438 * 11 10 9 33 33 H 1.08001 * 126.06780 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99924 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.57930 * 353.41572 * 18 17 15 36 36 H 1.08990 * 109.58552 * 113.84144 * 18 17 15 37 37 H 1.08999 * 109.56017 * 185.54785 * 19 18 17 38 38 H 1.09000 * 109.38490 * 65.51665 * 19 18 17 39 39 H 0.96698 * 114.00195 * 300.07163 * 22 20 19 40 40 H 1.08998 * 109.47622 * 304.84380 * 25 23 20 41 41 H 1.09003 * 109.46760 * 64.83950 * 25 23 20 42 42 H 0.96699 * 113.99960 * 179.97438 * 26 25 23 43 43 H 1.08997 * 109.58887 * 246.15840 * 27 17 15 44 44 H 1.08995 * 109.58428 * 6.43967 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 -0.0039 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 -0.0056 11 6 2.2454 -4.6245 0.8867 12 6 3.2630 -5.4436 0.5369 13 6 3.8674 -4.9126 -0.6138 14 7 4.9611 -5.4619 -1.2976 15 6 5.5272 -6.6029 -0.8572 16 8 5.1519 -7.1052 0.1846 17 7 6.5093 -7.1874 -1.5716 18 6 7.0450 -6.5401 -2.7770 19 6 6.9713 -7.5231 -3.9441 20 6 7.6823 -8.8225 -3.5593 21 1 7.6499 -9.5165 -4.3992 22 8 9.0433 -8.5403 -3.2273 23 6 6.9826 -9.4505 -2.3517 24 1 5.9380 -9.6438 -2.5958 25 6 7.6739 -10.7662 -1.9883 26 8 6.9533 -11.4075 -0.9340 27 6 7.0603 -8.4868 -1.1635 28 7 3.2254 -3.8161 -0.9411 29 1 -0.4850 0.8400 -0.0004 30 1 0.6278 -2.5589 0.8927 31 1 0.6210 -2.5550 -0.8873 32 1 1.5845 -4.7560 1.7307 33 1 3.5588 -6.3457 1.0517 34 1 5.3109 -5.0202 -2.0872 35 1 6.4539 -5.6542 -3.0093 36 1 8.0833 -6.2551 -2.6079 37 1 7.4557 -7.0884 -4.8185 38 1 5.9270 -7.7340 -4.1741 39 1 9.5489 -8.1398 -3.9477 40 1 7.6969 -11.4180 -2.8616 41 1 8.6932 -10.5625 -1.6601 42 1 7.3355 -12.2497 -0.6520 43 1 8.0999 -8.3639 -0.8601 44 1 6.4809 -8.8838 -0.3299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364085708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:33 Heat of formation + Delta-G solvation = -62.459470 kcal Electronic energy + Delta-G solvation = -27552.561373 eV Core-core repulsion = 23506.199423 eV Total energy + Delta-G solvation = -4046.361950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33825 -41.41417 -39.71293 -37.55082 -36.44978 -36.30138 -35.28945 -33.39637 -32.45130 -32.17376 -30.94001 -28.65549 -26.96632 -26.36422 -24.87817 -23.35388 -22.83054 -22.00650 -21.12177 -20.42002 -19.20752 -18.68384 -18.27499 -18.11491 -17.88744 -17.28124 -16.79008 -16.54607 -16.06195 -15.99035 -15.78191 -15.63150 -15.15280 -14.88932 -14.76278 -14.47054 -14.27478 -14.01409 -13.87248 -13.69102 -13.59217 -13.00786 -12.91526 -12.73585 -12.71782 -12.31454 -12.28760 -12.06886 -11.92507 -11.65553 -11.51506 -11.40548 -11.11390 -10.92854 -10.77785 -10.71897 -9.86126 -9.66661 -9.04583 -8.32488 -6.46718 1.02434 1.11103 1.38396 1.38919 1.50680 1.66143 2.01377 2.35494 2.35587 2.79205 2.98948 3.20287 3.36902 3.71315 3.84222 3.91151 4.00140 4.02833 4.24336 4.25813 4.40507 4.49910 4.54319 4.58888 4.65502 4.70889 4.80906 4.86629 4.91424 4.93777 5.00769 5.04089 5.07547 5.15085 5.28227 5.51206 5.56536 5.70207 5.84165 5.94300 6.28560 6.57968 6.67193 6.94721 6.98598 7.08640 7.23109 7.34921 8.75062 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023772 B = 0.002453 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.585131 B =11409.761243 C =12179.552939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.295 4.295 13 C 0.283 3.717 14 N -0.636 5.636 15 C 0.710 3.290 16 O -0.601 6.601 17 N -0.616 5.616 18 C 0.104 3.896 19 C -0.163 4.163 20 C 0.122 3.878 21 H 0.085 0.915 22 O -0.573 6.573 23 C -0.096 4.096 24 H 0.078 0.922 25 C 0.089 3.911 26 O -0.598 6.598 27 C 0.148 3.852 28 N -0.345 5.345 29 H 0.273 0.727 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.202 0.798 33 H 0.163 0.837 34 H 0.417 0.583 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.398 0.602 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.398 0.602 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.255 -20.932 -10.361 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.326 4.326 13 C 0.028 3.972 14 N -0.291 5.291 15 C 0.411 3.589 16 O -0.480 6.480 17 N -0.353 5.353 18 C -0.018 4.018 19 C -0.201 4.201 20 C 0.063 3.937 21 H 0.102 0.898 22 O -0.382 6.382 23 C -0.116 4.116 24 H 0.096 0.904 25 C 0.011 3.989 26 O -0.407 6.407 27 C 0.026 3.974 28 N -0.177 5.177 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.219 0.781 33 H 0.180 0.820 34 H 0.257 0.743 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.248 0.752 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.248 0.752 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.131 -19.861 -9.956 28.676 hybrid contribution 0.595 0.319 -0.163 0.695 sum 18.726 -19.541 -10.119 28.895 Atomic orbital electron populations 1.69997 1.07202 1.28772 1.49963 1.25747 0.95862 1.02729 0.93889 0.85337 0.78329 0.78090 0.78590 1.19678 1.19656 1.19817 1.21397 0.93355 0.90977 1.52805 0.93019 1.19347 0.85650 0.81446 0.98143 1.48834 1.24217 1.20245 1.19333 1.23130 1.00305 0.88745 0.96804 1.21654 1.02231 1.06638 1.02071 1.19098 0.90813 0.93156 0.94159 1.41580 1.30662 1.25322 1.31497 1.15748 0.80030 0.79820 0.83272 1.90827 1.66322 1.66029 1.24779 1.47301 1.37156 1.22380 1.28444 1.21811 1.00655 0.95697 0.83653 1.22566 1.02790 0.96394 0.98366 1.21561 0.81962 0.95039 0.95178 0.89771 1.86497 1.21885 1.84900 1.44868 1.21584 1.00312 0.94359 0.95341 0.90412 1.22084 0.94481 0.92080 0.90214 1.86487 1.56978 1.41233 1.55989 1.21347 0.98584 0.80298 0.97215 1.77226 1.05174 1.17988 1.17264 0.91824 0.92324 0.95986 0.78117 0.81994 0.74276 0.90171 0.88932 0.86539 0.91024 0.75187 0.91470 0.92222 0.75240 0.90639 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.64 13.29 21.45 0.28 -52.36 16 2 C 0.02 1.01 5.46 84.65 0.46 1.47 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.55 -31.37 9.24 25.60 0.24 -31.13 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.46 6.26 85.63 0.54 14.99 16 10 N -0.34 -16.76 3.67 -351.85 -1.29 -18.05 16 11 C 0.06 2.45 11.44 83.52 0.96 3.40 16 12 C -0.29 -12.49 9.61 22.10 0.21 -12.28 16 13 C 0.28 12.12 8.11 133.31 1.08 13.20 16 14 N -0.64 -21.51 5.36 -321.23 -1.72 -23.23 16 15 C 0.71 23.53 8.26 179.05 1.48 25.01 16 16 O -0.60 -24.39 12.93 -4.00 -0.05 -24.45 16 17 N -0.62 -14.60 2.98 -837.74 -2.50 -17.10 16 18 C 0.10 1.54 6.17 86.22 0.53 2.07 16 19 C -0.16 -1.48 5.79 30.53 0.18 -1.31 16 20 C 0.12 1.10 3.19 30.62 0.10 1.20 16 21 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 22 O -0.57 -4.64 11.52 -148.98 -1.72 -6.35 16 23 C -0.10 -1.54 2.41 -10.72 -0.03 -1.56 16 24 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 25 C 0.09 1.17 6.23 71.98 0.45 1.62 16 26 O -0.60 -10.01 13.31 -148.98 -1.98 -11.99 16 27 C 0.15 3.33 5.30 86.36 0.46 3.79 16 28 N -0.35 -16.68 12.42 -54.43 -0.68 -17.36 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.06 3.03 8.07 -2.39 -0.02 3.01 16 31 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.20 6.65 8.06 -2.91 -0.02 6.63 16 33 H 0.16 6.85 5.93 -2.91 -0.02 6.83 16 34 H 0.42 11.49 6.28 -92.71 -0.58 10.90 16 35 H 0.08 1.16 5.57 -2.39 -0.01 1.15 16 36 H 0.09 1.15 7.81 -2.39 -0.02 1.13 16 37 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.40 -0.13 9.08 -74.06 -0.67 -0.80 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.75 7.86 -2.39 -0.02 0.73 16 42 H 0.40 2.82 9.12 -74.06 -0.68 2.15 16 43 H 0.08 1.63 7.81 -2.39 -0.02 1.61 16 44 H 0.07 2.00 6.88 -2.39 -0.02 1.98 16 Total: -1.00 -79.36 361.23 -1.84 -81.20 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.86 Total: 23.17 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.65 Total: 20.47 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -5.90 Total: -128.10 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -3.75 Total: -42.79 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.36 -1.84 -81.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364085708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.736 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds