Wall clock time and date at job start Tue Mar 31 2020 13:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99743 * 2 1 4 4 H 1.48503 * 109.46717 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47298 * 299.99700 * 3 2 1 6 6 H 1.48497 * 109.47102 * 60.00397 * 3 2 1 7 7 C 1.37875 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99364 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00491 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47355 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97512 * 124.99495 * 10 9 7 12 12 C 1.35249 * 107.85585 * 179.71065 * 11 10 9 13 13 C 1.40401 * 107.86695 * 0.42878 * 12 11 10 14 14 N 1.40196 * 125.97268 * 179.82966 * 13 12 11 15 15 C 1.34774 * 120.00143 * 359.71719 * 14 13 12 16 16 O 1.21595 * 119.99574 * 5.20862 * 15 14 13 17 17 N 1.34776 * 120.00480 * 185.20862 * 15 14 13 18 18 C 1.46930 * 120.62517 * 354.94240 * 17 15 14 19 19 C 1.53188 * 108.77441 * 126.41454 * 18 17 15 20 20 C 1.53046 * 109.31264 * 54.63326 * 19 18 17 21 21 H 1.08998 * 109.44691 * 178.62011 * 20 19 18 22 22 O 1.42905 * 109.45902 * 58.65416 * 20 19 18 23 23 C 1.53044 * 109.53890 * 298.63393 * 20 19 18 24 24 H 1.08993 * 109.49423 * 301.41552 * 23 20 19 25 25 C 1.52996 * 109.49942 * 181.34820 * 23 20 19 26 26 O 1.42896 * 109.47141 * 175.00040 * 25 23 20 27 27 C 1.46924 * 120.63357 * 174.96614 * 17 15 14 28 28 N 1.31211 * 108.05596 * 359.56667 * 13 12 11 29 29 H 0.96993 * 120.00316 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47303 * 59.99443 * 9 7 2 31 31 H 1.09006 * 109.47186 * 299.99777 * 9 7 2 32 32 H 1.07995 * 126.07467 * 359.97438 * 11 10 9 33 33 H 1.07995 * 126.06745 * 180.26626 * 12 11 10 34 34 H 0.97003 * 119.99691 * 179.72084 * 14 13 12 35 35 H 1.09007 * 109.58178 * 246.20186 * 18 17 15 36 36 H 1.08994 * 109.58877 * 6.48033 * 18 17 15 37 37 H 1.08991 * 109.50041 * 294.68288 * 19 18 17 38 38 H 1.08995 * 109.49517 * 174.58091 * 19 18 17 39 39 H 0.96693 * 113.99938 * 59.93600 * 22 20 19 40 40 H 1.09004 * 109.46901 * 295.00143 * 25 23 20 41 41 H 1.09004 * 109.46894 * 54.99790 * 25 23 20 42 42 H 0.96699 * 114.00247 * 179.97438 * 26 25 23 43 43 H 1.09000 * 109.58525 * 113.79649 * 27 17 15 44 44 H 1.09002 * 109.70028 * 353.43964 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.2421 -4.6232 0.8912 12 6 3.2567 -5.4466 0.5421 13 6 3.8684 -4.9146 -0.6042 14 7 4.9642 -5.4651 -1.2836 15 6 5.5283 -6.6059 -0.8400 16 8 5.0301 -7.2082 0.0915 17 7 6.6446 -7.0790 -1.4286 18 6 7.1956 -6.4248 -2.6233 19 6 8.6690 -6.0923 -2.3679 20 6 9.4099 -7.3645 -1.9498 21 1 10.4636 -7.1353 -1.7912 22 8 9.2862 -8.3477 -2.9794 23 6 8.8051 -7.9060 -0.6524 24 1 8.8768 -7.1473 0.1268 25 6 9.5680 -9.1588 -0.2172 26 8 9.0798 -9.5968 1.0523 27 6 7.3332 -8.2591 -0.8883 28 7 3.2316 -3.8151 -0.9317 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5563 -0.8919 31 1 0.6240 -2.5575 0.8881 32 1 1.5782 -4.7536 1.7329 33 1 3.5467 -6.3513 1.0557 34 1 5.3163 -5.0249 -2.0730 35 1 7.1154 -7.0969 -3.4777 36 1 6.6418 -5.5082 -2.8262 37 1 8.7421 -5.3507 -1.5725 38 1 9.1153 -5.6943 -3.2792 39 1 9.6494 -8.0721 -3.8321 40 1 9.4215 -9.9479 -0.9548 41 1 10.6304 -8.9280 -0.1381 42 1 9.5191 -10.3891 1.3906 43 1 7.2642 -9.0807 -1.6013 44 1 6.8724 -8.5537 0.0546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364085720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:39 Heat of formation + Delta-G solvation = -62.475573 kcal Electronic energy + Delta-G solvation = -27581.442231 eV Core-core repulsion = 23535.079582 eV Total energy + Delta-G solvation = -4046.362649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.33668 -41.40958 -39.70986 -37.55027 -36.44849 -36.29943 -35.28956 -33.39818 -32.44960 -32.14970 -30.94006 -28.65620 -26.96816 -26.36444 -24.87940 -23.35735 -22.83150 -22.00686 -21.12194 -20.42334 -19.20738 -18.68549 -18.27635 -18.11490 -17.89321 -17.28124 -16.79464 -16.54090 -16.02898 -15.97985 -15.78817 -15.67004 -15.13473 -14.89533 -14.76477 -14.47153 -14.27644 -14.03738 -13.88565 -13.65038 -13.57412 -13.01987 -12.90857 -12.75256 -12.69827 -12.32318 -12.30476 -12.07989 -11.92253 -11.64808 -11.51364 -11.39550 -11.11307 -10.93146 -10.78124 -10.72110 -9.85958 -9.66601 -9.04583 -8.32568 -6.46764 1.05760 1.07459 1.37657 1.38635 1.52079 1.66479 2.01326 2.35087 2.36120 2.79160 2.98944 3.20023 3.36782 3.71256 3.84098 3.90589 3.99645 4.02831 4.24022 4.25746 4.40250 4.49891 4.54032 4.58628 4.65029 4.70828 4.80593 4.86568 4.91271 4.93725 5.00694 5.03985 5.07373 5.15006 5.28133 5.51147 5.56774 5.70205 5.84129 5.94302 6.28546 6.58027 6.67394 6.94706 6.98484 7.08644 7.23160 7.34903 8.75274 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.002530 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.095823 B =11065.844171 C =11717.031397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.295 4.295 13 C 0.283 3.717 14 N -0.637 5.637 15 C 0.710 3.290 16 O -0.601 6.601 17 N -0.616 5.616 18 C 0.104 3.896 19 C -0.163 4.163 20 C 0.122 3.878 21 H 0.084 0.916 22 O -0.572 6.572 23 C -0.097 4.097 24 H 0.076 0.924 25 C 0.090 3.910 26 O -0.598 6.598 27 C 0.148 3.852 28 N -0.345 5.345 29 H 0.273 0.727 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.163 0.837 34 H 0.417 0.583 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.398 0.602 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.398 0.602 43 H 0.077 0.923 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.550 -17.337 -6.349 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.326 4.326 13 C 0.028 3.972 14 N -0.291 5.291 15 C 0.411 3.589 16 O -0.480 6.480 17 N -0.353 5.353 18 C -0.018 4.018 19 C -0.202 4.202 20 C 0.063 3.937 21 H 0.101 0.899 22 O -0.381 6.381 23 C -0.117 4.117 24 H 0.094 0.906 25 C 0.012 3.988 26 O -0.407 6.407 27 C 0.026 3.974 28 N -0.177 5.177 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.180 0.820 34 H 0.257 0.743 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.248 0.752 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.248 0.752 43 H 0.095 0.905 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.245 -16.424 -6.122 28.321 hybrid contribution 0.659 0.396 -0.079 0.773 sum 22.904 -16.029 -6.201 28.635 Atomic orbital electron populations 1.70004 1.07228 1.28717 1.50050 1.25757 0.95860 1.02769 0.93898 0.85276 0.78389 0.78287 0.78311 1.19875 1.19762 1.19541 1.21423 0.93366 0.90940 1.52690 0.92973 1.19354 0.85658 0.81490 0.98136 1.48836 1.23876 1.20344 1.19569 1.23131 1.00388 0.88720 0.96744 1.21657 1.02411 1.06407 1.02116 1.19099 0.90905 0.93064 0.94161 1.41583 1.30561 1.25240 1.31684 1.15750 0.81159 0.79922 0.82044 1.90826 1.64625 1.60156 1.32344 1.47300 1.25089 1.32068 1.30836 1.21899 0.95079 0.97876 0.86917 1.22638 0.94644 0.98403 1.04475 1.21551 0.98560 0.87074 0.86514 0.89860 1.86493 1.85255 1.42908 1.23410 1.21585 0.94496 0.98519 0.97062 0.90575 1.22081 0.96715 0.95322 0.84717 1.86488 1.66564 1.50683 1.36962 1.21344 0.91101 0.85672 0.99295 1.77230 1.04902 1.18058 1.17466 0.91835 0.96019 0.92328 0.78117 0.81986 0.74281 0.88739 0.90189 0.91198 0.86568 0.75180 0.92121 0.91532 0.75234 0.90489 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.64 13.29 21.45 0.28 -52.36 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.24 9.24 25.60 0.24 -31.00 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.44 6.26 85.63 0.54 14.97 16 10 N -0.34 -16.77 3.67 -351.84 -1.29 -18.06 16 11 C 0.06 2.45 11.44 83.52 0.96 3.40 16 12 C -0.29 -12.49 9.61 22.11 0.21 -12.28 16 13 C 0.28 12.13 8.11 133.31 1.08 13.21 16 14 N -0.64 -21.53 5.36 -321.23 -1.72 -23.25 16 15 C 0.71 23.53 8.26 179.06 1.48 25.01 16 16 O -0.60 -24.35 12.93 -4.01 -0.05 -24.41 16 17 N -0.62 -14.62 2.97 -836.90 -2.49 -17.11 16 18 C 0.10 1.55 6.19 86.36 0.53 2.08 16 19 C -0.16 -1.56 5.80 30.67 0.18 -1.38 16 20 C 0.12 1.14 3.19 30.62 0.10 1.24 16 21 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 22 O -0.57 -4.61 11.52 -148.98 -1.72 -6.33 16 23 C -0.10 -1.58 2.41 -10.72 -0.03 -1.61 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 C 0.09 1.19 6.23 71.98 0.45 1.64 16 26 O -0.60 -10.16 13.31 -148.98 -1.98 -12.14 16 27 C 0.15 3.34 5.30 86.36 0.46 3.80 16 28 N -0.35 -16.70 12.42 -54.43 -0.68 -17.38 16 29 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 3.03 8.07 -2.38 -0.02 3.01 16 32 H 0.20 6.65 8.06 -2.91 -0.02 6.63 16 33 H 0.16 6.85 5.93 -2.91 -0.02 6.83 16 34 H 0.42 11.50 6.28 -92.71 -0.58 10.92 16 35 H 0.09 1.14 7.81 -2.38 -0.02 1.12 16 36 H 0.08 1.17 5.56 -2.39 -0.01 1.15 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.40 -0.15 9.08 -74.06 -0.67 -0.82 16 40 H 0.06 0.76 7.87 -2.38 -0.02 0.74 16 41 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.40 2.90 9.12 -74.06 -0.68 2.22 16 43 H 0.08 1.64 7.81 -2.39 -0.02 1.62 16 44 H 0.07 2.00 6.89 -2.39 -0.02 1.98 16 Total: -1.00 -79.28 361.27 -1.83 -81.11 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.87 Total: 23.51 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 6.65 Total: 20.51 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -5.89 Total: -128.15 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -3.75 Total: -42.87 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -79.28 -1.83 -81.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364085720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.634 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds