Wall clock time and date at job start Tue Mar 31 2020 14:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38673 * 120.41846 * 2 1 4 4 C 1.38630 * 118.42202 * 179.70908 * 3 2 1 5 5 C 1.38227 * 119.15715 * 0.55710 * 4 3 2 6 6 C 1.50703 * 119.61599 * 179.71340 * 5 4 3 7 7 N 1.46495 * 109.47254 * 94.72463 * 6 5 4 8 8 C 1.34781 * 119.99947 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99522 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00193 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47121 * 59.99671 * 10 8 7 12 12 C 1.50703 * 109.46853 * 299.99923 * 10 8 7 13 13 H 1.07997 * 120.00225 * 333.07845 * 12 10 8 14 14 C 1.37882 * 119.99660 * 153.07817 * 12 10 8 15 15 N 1.31514 * 119.99887 * 6.40261 * 14 12 10 16 16 Si 1.86804 * 119.99692 * 186.40509 * 14 12 10 17 17 H 1.48504 * 109.46817 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.46966 * 299.99759 * 16 14 12 19 19 H 1.48495 * 109.47010 * 59.99865 * 16 14 12 20 20 C 1.50699 * 109.47054 * 180.02562 * 10 8 7 21 21 C 1.38227 * 120.00438 * 66.42374 * 20 10 8 22 22 C 1.38243 * 120.00156 * 179.78916 * 21 20 10 23 23 C 1.38236 * 119.99760 * 0.44252 * 22 21 20 24 24 C 1.38231 * 120.00026 * 359.80819 * 23 22 21 25 25 C 1.38241 * 120.00276 * 359.97438 * 24 23 22 26 26 N 1.31848 * 120.76548 * 359.43125 * 5 4 3 27 27 C 1.31891 * 121.72755 * 0.27797 * 26 5 4 28 28 C 1.50702 * 119.61952 * 179.97438 * 27 26 5 29 29 H 1.08993 * 109.47097 * 270.01542 * 1 2 3 30 30 H 1.09000 * 109.46872 * 30.01850 * 1 2 3 31 31 H 1.09002 * 109.46723 * 150.01555 * 1 2 3 32 32 H 1.08002 * 120.78958 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.41972 * 180.28563 * 4 3 2 34 34 H 1.08998 * 109.46918 * 334.71983 * 6 5 4 35 35 H 1.09001 * 109.46860 * 214.72511 * 6 5 4 36 36 H 0.96994 * 120.00223 * 0.02562 * 7 6 5 37 37 H 0.96991 * 120.00213 * 355.60792 * 15 14 12 38 38 H 1.08005 * 120.00127 * 359.97438 * 21 20 10 39 39 H 1.07993 * 119.99833 * 180.27661 * 22 21 20 40 40 H 1.07997 * 119.99703 * 179.83587 * 23 22 21 41 41 H 1.07996 * 120.00220 * 180.02562 * 24 23 22 42 42 H 1.07990 * 120.00228 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.46523 * 89.99831 * 28 27 26 44 44 H 1.09001 * 109.47289 * 210.00035 * 28 27 26 45 45 H 1.09000 * 109.47026 * 330.00100 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1476 0.0062 5 6 4.2256 -0.0823 0.0004 6 6 5.7313 -0.1468 0.0005 7 7 6.2139 -0.2880 1.3764 8 6 7.5369 -0.3667 1.6217 9 8 8.3277 -0.3201 0.7033 10 6 8.0334 -0.5126 3.0370 11 1 7.6302 -1.4276 3.4711 12 6 7.5818 0.6716 3.8524 13 1 7.3951 1.6197 3.3701 14 6 7.4068 0.5446 5.2141 15 7 7.7533 -0.5699 5.8205 16 14 6.6776 1.9554 6.1977 17 1 6.5954 1.5700 7.6295 18 1 7.5414 3.1551 6.0574 19 1 5.3171 2.2627 5.6883 20 6 9.5391 -0.5770 3.0370 21 6 10.2781 0.5273 2.6563 22 6 11.6593 0.4696 2.6604 23 6 12.3013 -0.6955 3.0367 24 6 11.5621 -1.8014 3.4125 25 6 10.1810 -1.7423 3.4126 26 7 3.5256 -1.1995 0.0003 27 6 2.2067 -1.1916 0.0003 28 6 1.4540 -2.4972 -0.0003 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6890 2.1423 0.0004 33 1 4.1736 2.0593 0.0110 34 1 6.1341 0.7682 -0.4338 35 1 6.0582 -1.0033 -0.5890 36 1 5.5815 -0.3257 2.1108 37 1 8.0722 -1.3251 5.3021 38 1 9.7766 1.4362 2.3583 39 1 12.2368 1.3338 2.3672 40 1 13.3803 -0.7414 3.0374 41 1 12.0636 -2.7115 3.7068 42 1 9.6035 -2.6062 3.7066 43 1 1.2726 -2.8124 1.0273 44 1 0.5015 -2.3672 -0.5141 45 1 2.0436 -3.2562 -0.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527908302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:08 Heat of formation + Delta-G solvation = 4.926006 kcal Electronic energy + Delta-G solvation = -26469.457129 eV Core-core repulsion = 22836.866495 eV Total energy + Delta-G solvation = -3632.590634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58839 -39.19939 -37.78878 -35.16492 -33.94861 -33.22575 -32.91062 -30.85311 -30.00103 -28.81015 -28.47709 -26.94945 -24.68798 -23.57129 -22.53858 -21.62414 -21.33919 -20.78398 -19.51099 -17.43028 -16.86507 -16.48312 -15.84716 -15.66534 -15.31418 -14.85251 -14.68796 -14.50741 -14.08325 -13.87779 -13.80156 -13.39594 -13.12474 -12.97380 -12.84451 -12.83576 -12.63887 -12.40665 -12.27485 -12.15383 -12.10900 -11.85491 -11.53397 -11.38381 -10.96502 -10.84268 -10.29426 -10.20460 -10.13770 -9.78818 -9.48707 -9.04945 -8.94829 -8.67128 -8.56017 -8.42194 -8.00078 -7.63196 -6.55839 -4.31052 0.93340 1.19388 2.30925 2.35769 3.33738 3.35498 3.49878 3.54439 3.63058 4.04176 4.23676 4.40105 4.54361 4.61306 4.74387 4.79481 4.80823 5.16287 5.18407 5.26712 5.38016 5.44423 5.47851 5.50410 5.66777 5.68267 5.71593 5.73081 5.81811 5.86929 5.97093 6.08692 6.10852 6.19231 6.23051 6.42385 6.48987 6.62747 6.64471 6.89745 6.99385 7.08599 7.31286 7.37643 7.60482 7.84707 7.95991 7.97415 8.19924 8.28385 8.61838 9.13238 9.41002 10.83085 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.003481 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.434311 B = 8041.413935 C = 9198.158076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.139 4.139 3 C -0.075 4.075 4 C -0.154 4.154 5 C 0.117 3.883 6 C 0.174 3.826 7 N -0.722 5.722 8 C 0.535 3.465 9 O -0.563 6.563 10 C 0.044 3.956 11 H 0.065 0.935 12 C -0.593 4.593 13 H 0.058 0.942 14 C 0.031 3.969 15 N -0.893 5.893 16 Si 1.068 2.932 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.018 4.018 21 C -0.078 4.078 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.129 4.129 25 C -0.127 4.127 26 N -0.467 5.467 27 C 0.125 3.875 28 C -0.106 4.106 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.405 0.595 37 H 0.273 0.727 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 0.739 -9.667 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C -0.101 4.101 4 C -0.174 4.174 5 C -0.021 4.021 6 C 0.050 3.950 7 N -0.375 5.375 8 C 0.325 3.675 9 O -0.442 6.442 10 C 0.023 3.977 11 H 0.082 0.918 12 C -0.631 4.631 13 H 0.076 0.924 14 C -0.176 4.176 15 N -0.527 5.527 16 Si 0.895 3.105 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.213 1.213 20 C -0.019 4.019 21 C -0.096 4.096 22 C -0.151 4.151 23 C -0.164 4.164 24 C -0.147 4.147 25 C -0.145 4.145 26 N -0.176 5.176 27 C -0.013 4.013 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.240 0.760 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.108 0.436 -8.790 14.172 hybrid contribution -0.263 0.470 -1.109 1.233 sum -11.371 0.906 -9.899 15.104 Atomic orbital electron populations 1.20801 0.90335 1.03012 1.02691 1.20725 0.97449 0.93690 1.02274 1.21464 0.93926 0.98079 0.96631 1.22019 0.95134 0.99175 1.01118 1.21244 0.96243 0.88465 0.96190 1.19956 0.86129 1.02755 0.86202 1.45838 1.08153 1.76326 1.07154 1.21312 0.80886 0.73169 0.92183 1.90592 1.55177 1.51181 1.47248 1.18149 0.89304 1.00768 0.89462 0.91767 1.21530 1.50938 0.95978 0.94644 0.92419 1.25851 0.94404 1.01972 0.95358 1.70783 1.38727 1.04043 1.39098 0.83544 0.76197 0.74461 0.76260 1.20618 1.21229 1.21257 1.20088 0.96485 0.92081 0.93238 1.20785 0.92817 0.98262 0.97760 1.20980 0.94830 0.97469 1.01819 1.20816 0.98564 0.94037 1.03019 1.20879 0.94132 0.97989 1.01683 1.20969 0.94226 0.97591 1.01730 1.67340 1.07544 1.31156 1.11570 1.21135 0.89513 0.95063 0.95625 1.20777 0.99116 0.93207 1.03235 0.90786 0.91479 0.90866 0.84759 0.84442 0.90531 0.90481 0.75978 0.91480 0.86998 0.87421 0.87535 0.87412 0.87332 0.90266 0.90527 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.62 36.01 0.35 -0.44 16 2 C -0.14 -1.48 5.90 -104.48 -0.62 -2.10 16 3 C -0.08 -0.81 9.86 -39.28 -0.39 -1.20 16 4 C -0.15 -1.94 9.72 -39.44 -0.38 -2.32 16 5 C 0.12 1.73 6.15 -82.59 -0.51 1.22 16 6 C 0.17 2.88 5.98 -5.19 -0.03 2.85 16 7 N -0.72 -13.95 5.45 -61.47 -0.33 -14.28 16 8 C 0.54 12.18 7.04 -10.98 -0.08 12.10 16 9 O -0.56 -13.91 15.43 5.56 0.09 -13.83 16 10 C 0.04 1.08 1.94 -94.08 -0.18 0.89 16 11 H 0.06 1.61 6.63 -51.93 -0.34 1.27 16 12 C -0.59 -15.14 7.45 -34.44 -0.26 -15.40 16 13 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 14 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 15 N -0.89 -25.00 13.63 55.43 0.76 -24.24 16 16 Si 1.07 23.60 29.91 -169.99 -5.08 18.52 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 19 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 20 C -0.02 -0.43 4.17 -104.62 -0.44 -0.87 16 21 C -0.08 -1.81 8.33 -39.58 -0.33 -2.14 16 22 C -0.13 -2.70 10.05 -39.58 -0.40 -3.09 16 23 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 24 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 25 C -0.13 -2.83 9.50 -39.58 -0.38 -3.20 16 26 N -0.47 -7.05 10.19 -5.74 -0.06 -7.11 16 27 C 0.13 1.55 6.78 -82.59 -0.56 0.99 16 28 C -0.11 -0.98 9.77 36.01 0.35 -0.63 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 5.96 -51.93 -0.31 0.12 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.41 7.79 8.35 -40.82 -0.34 7.45 16 37 H 0.27 7.61 6.49 -40.82 -0.26 7.34 16 38 H 0.11 2.63 7.88 -52.48 -0.41 2.22 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.11 2.29 7.96 -52.49 -0.42 1.87 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.51 5.94 -51.93 -0.31 0.20 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -31.61 379.75 -9.90 -41.51 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.25 Total: 12.46 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -4.74 Total: -18.75 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.36 Total: -45.64 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.08 Total: 18.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.61 -9.90 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527908302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.433 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds