Wall clock time and date at job start Tue Mar 31 2020 14:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38300 * 119.96492 * 2 1 4 4 C 1.38255 * 120.13978 * 180.25238 * 3 2 1 5 5 C 1.38137 * 120.06845 * 359.49217 * 4 3 2 6 6 C 1.38842 * 119.93277 * 0.25430 * 5 4 3 7 7 N 1.39934 * 120.07189 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99899 * 90.00255 * 7 6 5 9 9 C 1.34771 * 119.99972 * 269.99649 * 7 6 5 10 10 O 1.21594 * 120.00416 * 0.02562 * 9 7 6 11 11 N 1.34784 * 120.00062 * 180.02562 * 9 7 6 12 12 C 1.39946 * 120.00041 * 174.83379 * 11 9 7 13 13 C 1.39286 * 119.94878 * 146.37476 * 12 11 9 14 14 C 1.38489 * 120.43226 * 179.97438 * 13 12 11 15 15 C 1.37683 * 120.31805 * 0.02562 * 14 13 12 16 16 C 1.40745 * 119.88688 * 0.02562 * 15 14 13 17 17 C 1.41401 * 120.21106 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00445 * 151.78317 * 17 16 15 19 19 C 1.39931 * 120.00049 * 331.77443 * 17 16 15 20 20 N 1.30830 * 120.00156 * 348.99513 * 19 17 16 21 21 Si 1.86798 * 120.00218 * 168.99330 * 19 17 16 22 22 H 1.48503 * 109.47354 * 89.99893 * 21 19 17 23 23 H 1.48500 * 109.47157 * 210.00477 * 21 19 17 24 24 H 1.48504 * 109.47124 * 329.99961 * 21 19 17 25 25 C 1.38242 * 119.94730 * 326.09895 * 12 11 9 26 26 C 1.38090 * 119.96442 * 179.74274 * 2 1 3 27 27 C 1.50707 * 120.03652 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47158 * 270.25191 * 1 2 3 29 29 H 1.08997 * 109.46904 * 30.25370 * 1 2 3 30 30 H 1.09001 * 109.47358 * 150.25631 * 1 2 3 31 31 H 1.08002 * 119.92956 * 0.02584 * 3 2 1 32 32 H 1.08003 * 119.96654 * 179.76751 * 4 3 2 33 33 H 1.07999 * 120.03449 * 180.22946 * 5 4 3 34 34 H 1.08992 * 109.47120 * 89.99660 * 8 7 6 35 35 H 1.09002 * 109.46548 * 210.00261 * 8 7 6 36 36 H 1.09001 * 109.46637 * 329.99304 * 8 7 6 37 37 H 0.96996 * 119.99734 * 354.83094 * 11 9 7 38 38 H 1.07998 * 119.78445 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.83842 * 180.02562 * 14 13 12 40 40 H 1.07999 * 120.06021 * 179.97438 * 15 14 13 41 41 H 0.96994 * 120.00613 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.15672 * 359.97438 * 25 12 11 43 43 H 1.08992 * 109.47112 * 269.97724 * 27 26 2 44 44 H 1.08999 * 109.46669 * 29.97611 * 27 26 2 45 45 H 1.08999 * 109.47243 * 149.97395 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2024 -0.0053 5 6 4.2761 0.0090 0.0000 6 6 3.5856 -1.1955 0.0054 7 7 4.2875 -2.4061 0.0102 8 6 4.6553 -3.0344 1.2815 9 6 4.6251 -2.9940 -1.1546 10 8 4.3201 -2.4723 -2.2098 11 7 5.3007 -4.1602 -1.1500 12 6 5.5568 -4.8254 -2.3543 13 6 6.7354 -5.5508 -2.5111 14 6 6.9988 -6.2132 -3.6984 15 6 6.0975 -6.1613 -4.7379 16 6 4.9027 -5.4314 -4.5945 17 6 3.9720 -5.3739 -5.6574 18 1 2.9212 -5.2377 -5.4485 19 6 4.4124 -5.4933 -6.9803 20 7 5.6913 -5.4416 -7.2511 21 14 3.1744 -5.7265 -8.3595 22 1 2.7573 -4.3997 -8.8799 23 1 3.7955 -6.5148 -9.4541 24 1 1.9861 -6.4506 -7.8408 25 6 4.6369 -4.7661 -3.3845 26 6 2.1967 -1.1963 0.0054 27 6 1.4432 -2.5015 0.0106 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5098 31 1 1.6561 2.1325 0.0004 32 1 4.1169 2.1397 -0.0090 33 1 5.3561 0.0130 -0.0003 34 1 3.8576 -3.7057 1.5992 35 1 5.5776 -3.6011 1.1532 36 1 4.8047 -2.2638 2.0378 37 1 5.6094 -4.5385 -0.3118 38 1 7.4486 -5.5970 -1.7014 39 1 7.9155 -6.7732 -3.8094 40 1 6.3072 -6.6792 -5.6622 41 1 5.9967 -5.5247 -8.1680 42 1 3.7204 -4.2079 -3.2622 43 1 1.2615 -2.8119 1.0395 44 1 0.4908 -2.3732 -0.5037 45 1 2.0323 -3.2632 -0.5001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562816709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:41 Heat of formation + Delta-G solvation = 29.593024 kcal Electronic energy + Delta-G solvation = -26933.417237 eV Core-core repulsion = 23301.896245 eV Total energy + Delta-G solvation = -3631.520992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72075 -39.15088 -37.32014 -35.39899 -34.44194 -33.41491 -32.99105 -31.10354 -29.75638 -28.12900 -27.67420 -26.65873 -26.13045 -25.23005 -22.87108 -21.05700 -20.91132 -20.64328 -19.28364 -18.14450 -17.29681 -16.64911 -16.34081 -15.74684 -15.33650 -14.77787 -14.69919 -14.46109 -14.27518 -13.88467 -13.59636 -13.39704 -13.02098 -12.93444 -12.85118 -12.80384 -12.68443 -12.53782 -12.12914 -11.92898 -11.75937 -11.65543 -11.34054 -11.23060 -11.04298 -10.98606 -10.61275 -10.45669 -10.09667 -9.70980 -9.54356 -9.16984 -8.87185 -8.75963 -8.63652 -8.55853 -7.35860 -6.82017 -6.60567 -4.28720 1.25610 1.35980 2.71667 2.84455 3.00186 3.13475 3.18324 3.25585 3.64799 3.69431 4.02468 4.27961 4.73527 4.76132 4.82968 4.93422 4.98425 5.11700 5.23081 5.24316 5.43596 5.47997 5.49014 5.61467 5.63998 5.77136 5.78372 5.83005 5.90957 6.24784 6.25698 6.35909 6.43196 6.46912 6.52856 6.63311 6.75185 6.82779 7.09091 7.13187 7.20667 7.30207 7.35657 7.71612 7.83168 8.03958 8.15876 8.29585 8.42577 8.72759 8.95168 9.02974 9.08212 10.32649 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.003507 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.414893 B = 7982.755364 C = 9275.633128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.167 3.833 7 N -0.598 5.598 8 C 0.083 3.917 9 C 0.701 3.299 10 O -0.547 6.547 11 N -0.679 5.679 12 C 0.166 3.834 13 C -0.260 4.260 14 C -0.093 4.093 15 C -0.169 4.169 16 C 0.120 3.880 17 C -0.457 4.457 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.802 5.802 21 Si 0.910 3.090 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.207 4.207 26 C -0.073 4.073 27 C -0.113 4.113 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.394 0.606 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.278 0.722 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 7.571 17.138 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.131 4.131 6 C 0.076 3.924 7 N -0.334 5.334 8 C -0.059 4.059 9 C 0.403 3.597 10 O -0.420 6.420 11 N -0.327 5.327 12 C 0.074 3.926 13 C -0.282 4.282 14 C -0.112 4.112 15 C -0.189 4.189 16 C 0.117 3.883 17 C -0.487 4.487 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.428 5.428 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.229 4.229 26 C -0.075 4.075 27 C -0.170 4.170 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.229 0.771 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.348 7.928 16.154 18.773 hybrid contribution -0.013 -0.133 -0.196 0.238 sum -5.361 7.795 15.958 18.552 Atomic orbital electron populations 1.20842 0.91129 1.03077 1.02118 1.19629 0.96015 0.92179 1.00706 1.21009 0.94199 0.97325 1.00869 1.20944 0.94177 0.97497 1.00945 1.21309 1.00094 0.91779 0.99900 1.17027 0.89355 0.84435 1.01589 1.44445 1.60525 1.22992 1.05441 1.21758 1.00316 0.98472 0.85388 1.15889 0.79528 0.80950 0.83325 1.91031 1.58048 1.64239 1.28728 1.42728 1.58575 1.22027 1.09384 1.17236 0.94724 0.95665 0.84960 1.20008 0.97285 1.11628 0.99278 1.20458 0.98081 0.99336 0.93358 1.21400 0.96413 1.02701 0.98392 1.17494 0.92277 0.87595 0.90933 1.19533 0.95183 1.43801 0.90221 0.90640 1.25868 0.95721 0.92418 1.00242 1.69803 1.15029 1.36515 1.21432 0.86288 0.81174 0.79159 0.79914 1.19548 1.20191 1.18576 1.20996 1.00272 1.06188 0.95401 1.19979 0.92789 0.95461 0.99262 1.20774 1.00087 0.94373 1.01761 0.91280 0.91579 0.91010 0.86031 0.85839 0.86044 0.92423 0.91156 0.90837 0.77081 0.89404 0.89036 0.86087 0.91082 0.87537 0.91414 0.91065 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.60 36.01 0.35 -0.72 16 2 C -0.08 -1.03 5.88 -104.65 -0.62 -1.64 16 3 C -0.12 -1.31 9.70 -39.55 -0.38 -1.69 16 4 C -0.12 -1.38 10.04 -39.61 -0.40 -1.77 16 5 C -0.11 -1.53 9.97 -39.40 -0.39 -1.92 16 6 C 0.17 2.49 4.44 -83.69 -0.37 2.12 16 7 N -0.60 -8.91 2.04 -126.23 -0.26 -9.16 16 8 C 0.08 0.83 10.24 59.85 0.61 1.44 16 9 C 0.70 13.76 7.31 -86.92 -0.64 13.13 16 10 O -0.55 -13.62 14.03 5.28 0.07 -13.55 16 11 N -0.68 -12.75 5.22 -14.27 -0.07 -12.82 16 12 C 0.17 3.88 6.26 -83.76 -0.52 3.35 16 13 C -0.26 -5.84 9.97 -39.10 -0.39 -6.23 16 14 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 15 C -0.17 -4.53 8.66 -38.84 -0.34 -4.87 16 16 C 0.12 3.38 5.55 -106.85 -0.59 2.79 16 17 C -0.46 -12.87 9.06 -37.75 -0.34 -13.21 16 18 H 0.08 2.07 7.87 -52.49 -0.41 1.66 16 19 C 0.07 1.95 5.25 -17.34 -0.09 1.86 16 20 N -0.80 -21.67 10.81 55.55 0.60 -21.07 16 21 Si 0.91 19.66 29.57 -169.99 -5.03 14.63 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.21 -5.53 8.39 -38.69 -0.32 -5.85 16 26 C -0.07 -1.02 5.90 -104.43 -0.62 -1.64 16 27 C -0.11 -1.45 9.36 36.01 0.34 -1.11 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.67 5.94 -51.93 -0.31 0.37 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 6.29 -51.93 -0.33 0.28 16 36 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 37 H 0.39 5.71 6.51 -40.82 -0.27 5.45 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.12 3.32 6.18 -52.49 -0.32 3.00 16 41 H 0.28 6.84 8.30 -40.82 -0.34 6.51 16 42 H 0.11 2.97 6.44 -52.49 -0.34 2.63 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.83 5.94 -51.93 -0.31 0.53 16 45 H 0.07 1.06 6.90 -51.93 -0.36 0.70 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -33.57 369.82 -10.23 -43.79 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.00 Total: 11.21 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -5.12 Total: -18.60 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.27 Total: -43.06 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.57 -10.23 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562816709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.387 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds