Wall clock time and date at job start Tue Mar 31 2020 14:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38300 * 119.96492 * 2 1 4 4 C 1.38255 * 120.13978 * 180.25238 * 3 2 1 5 5 C 1.38137 * 120.06845 * 359.49217 * 4 3 2 6 6 C 1.38842 * 119.93277 * 0.25430 * 5 4 3 7 7 N 1.39934 * 120.07189 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99899 * 90.00255 * 7 6 5 9 9 C 1.34771 * 119.99972 * 269.99649 * 7 6 5 10 10 O 1.21594 * 120.00416 * 0.02562 * 9 7 6 11 11 N 1.34784 * 120.00062 * 180.02562 * 9 7 6 12 12 C 1.39946 * 120.00041 * 174.83379 * 11 9 7 13 13 C 1.39286 * 119.94878 * 146.37476 * 12 11 9 14 14 C 1.38489 * 120.43226 * 179.97438 * 13 12 11 15 15 C 1.37683 * 120.31805 * 0.02562 * 14 13 12 16 16 C 1.40745 * 119.88688 * 0.02562 * 15 14 13 17 17 C 1.41401 * 120.21106 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00445 * 151.78317 * 17 16 15 19 19 C 1.39931 * 120.00049 * 331.77443 * 17 16 15 20 20 N 1.30830 * 120.00156 * 348.99513 * 19 17 16 21 21 Si 1.86798 * 120.00218 * 168.99330 * 19 17 16 22 22 H 1.48503 * 109.47354 * 89.99893 * 21 19 17 23 23 H 1.48500 * 109.47157 * 210.00477 * 21 19 17 24 24 H 1.48504 * 109.47124 * 329.99961 * 21 19 17 25 25 C 1.38242 * 119.94730 * 326.09895 * 12 11 9 26 26 C 1.38090 * 119.96442 * 179.74274 * 2 1 3 27 27 C 1.50707 * 120.03652 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47158 * 270.25191 * 1 2 3 29 29 H 1.08997 * 109.46904 * 30.25370 * 1 2 3 30 30 H 1.09001 * 109.47358 * 150.25631 * 1 2 3 31 31 H 1.08002 * 119.92956 * 0.02584 * 3 2 1 32 32 H 1.08003 * 119.96654 * 179.76751 * 4 3 2 33 33 H 1.07999 * 120.03449 * 180.22946 * 5 4 3 34 34 H 1.08992 * 109.47120 * 89.99660 * 8 7 6 35 35 H 1.09002 * 109.46548 * 210.00261 * 8 7 6 36 36 H 1.09001 * 109.46637 * 329.99304 * 8 7 6 37 37 H 0.96996 * 119.99734 * 354.83094 * 11 9 7 38 38 H 1.07998 * 119.78445 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.83842 * 180.02562 * 14 13 12 40 40 H 1.07999 * 120.06021 * 179.97438 * 15 14 13 41 41 H 0.96994 * 120.00613 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.15672 * 359.97438 * 25 12 11 43 43 H 1.08992 * 109.47112 * 269.97724 * 27 26 2 44 44 H 1.08999 * 109.46669 * 29.97611 * 27 26 2 45 45 H 1.08999 * 109.47243 * 149.97395 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2024 -0.0053 5 6 4.2761 0.0090 0.0000 6 6 3.5856 -1.1955 0.0054 7 7 4.2875 -2.4061 0.0102 8 6 4.6553 -3.0344 1.2815 9 6 4.6251 -2.9940 -1.1546 10 8 4.3201 -2.4723 -2.2098 11 7 5.3007 -4.1602 -1.1500 12 6 5.5568 -4.8254 -2.3543 13 6 6.7354 -5.5508 -2.5111 14 6 6.9988 -6.2132 -3.6984 15 6 6.0975 -6.1613 -4.7379 16 6 4.9027 -5.4314 -4.5945 17 6 3.9720 -5.3739 -5.6574 18 1 2.9212 -5.2377 -5.4485 19 6 4.4124 -5.4933 -6.9803 20 7 5.6913 -5.4416 -7.2511 21 14 3.1744 -5.7265 -8.3595 22 1 2.7573 -4.3997 -8.8799 23 1 3.7955 -6.5148 -9.4541 24 1 1.9861 -6.4506 -7.8408 25 6 4.6369 -4.7661 -3.3845 26 6 2.1967 -1.1963 0.0054 27 6 1.4432 -2.5015 0.0106 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5098 31 1 1.6561 2.1325 0.0004 32 1 4.1169 2.1397 -0.0090 33 1 5.3561 0.0130 -0.0003 34 1 3.8576 -3.7057 1.5992 35 1 5.5776 -3.6011 1.1532 36 1 4.8047 -2.2638 2.0378 37 1 5.6094 -4.5385 -0.3118 38 1 7.4486 -5.5970 -1.7014 39 1 7.9155 -6.7732 -3.8094 40 1 6.3072 -6.6792 -5.6622 41 1 5.9967 -5.5247 -8.1680 42 1 3.7204 -4.2079 -3.2622 43 1 1.2615 -2.8119 1.0395 44 1 0.4908 -2.3732 -0.5037 45 1 2.0323 -3.2632 -0.5001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001562816709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:40 Heat of formation + Delta-G solvation = 11.695151 kcal Electronic energy + Delta-G solvation = -26934.193347 eV Core-core repulsion = 23301.896245 eV Total energy + Delta-G solvation = -3632.297102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04418 -40.41961 -39.06403 -36.72289 -36.24731 -34.84352 -34.33349 -32.16338 -31.74473 -29.82027 -28.66384 -27.62077 -27.29292 -27.10765 -24.24746 -22.88023 -22.33865 -21.84238 -20.76275 -19.74888 -18.94958 -17.89840 -17.51705 -17.25915 -16.80826 -16.44916 -16.29474 -15.97548 -15.46215 -15.10213 -14.89996 -14.69488 -14.58619 -14.23889 -13.97245 -13.94318 -13.70923 -13.59284 -13.55415 -13.45760 -13.10475 -12.82921 -12.79887 -12.67207 -12.57989 -12.27040 -12.21879 -11.95763 -11.90403 -11.59771 -11.34818 -11.06644 -10.74209 -9.96723 -9.62724 -9.51443 -9.36139 -8.69845 -8.57051 -6.38517 0.25106 0.39397 0.91919 1.01122 1.34996 1.46773 1.50867 1.54770 2.08942 2.21720 2.69267 2.76159 2.94611 3.73652 3.85370 3.90301 4.06953 4.11952 4.20282 4.37670 4.42861 4.47794 4.59169 4.62001 4.62251 4.70269 4.73523 4.81569 4.88318 4.93333 4.98840 5.04241 5.09622 5.11915 5.12415 5.32333 5.33970 5.42793 5.51659 5.55510 5.64556 5.74601 5.80079 5.97458 6.08899 6.12257 6.14882 6.37235 6.69061 6.89603 6.94924 7.01156 7.52578 8.37578 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.003507 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.414893 B = 7982.755364 C = 9275.633128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.130 4.130 6 C 0.136 3.864 7 N -0.584 5.584 8 C 0.074 3.926 9 C 0.698 3.302 10 O -0.609 6.609 11 N -0.666 5.666 12 C 0.173 3.827 13 C -0.247 4.247 14 C -0.091 4.091 15 C -0.194 4.194 16 C 0.090 3.910 17 C -0.502 4.502 18 H 0.063 0.937 19 C 0.033 3.967 20 N -0.832 5.832 21 Si 0.984 3.016 22 H -0.267 1.267 23 H -0.258 1.258 24 H -0.259 1.259 25 C -0.233 4.233 26 C -0.096 4.096 27 C -0.107 4.107 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.417 0.583 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.287 0.713 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 8.298 19.049 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.150 4.150 6 C 0.045 3.955 7 N -0.318 5.318 8 C -0.067 4.067 9 C 0.401 3.599 10 O -0.486 6.486 11 N -0.316 5.316 12 C 0.080 3.920 13 C -0.268 4.268 14 C -0.109 4.109 15 C -0.214 4.214 16 C 0.087 3.913 17 C -0.533 4.533 18 H 0.081 0.919 19 C -0.180 4.180 20 N -0.458 5.458 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.182 1.182 24 H -0.183 1.183 25 C -0.255 4.255 26 C -0.097 4.097 27 C -0.164 4.164 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.257 0.743 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.257 8.649 18.175 20.803 hybrid contribution 0.001 -0.259 -0.583 0.638 sum -5.256 8.391 17.591 20.186 Atomic orbital electron populations 1.20897 0.89084 1.03478 1.03527 1.20035 0.97642 0.91850 0.99669 1.21417 0.94212 0.98298 0.99441 1.21301 0.94757 0.97801 0.99725 1.21456 1.00306 0.92300 1.00910 1.17358 0.90101 0.84641 1.03363 1.44370 1.59225 1.22812 1.05414 1.22113 1.01521 0.99487 0.83560 1.16106 0.79026 0.80871 0.83902 1.90987 1.60237 1.65853 1.31562 1.42457 1.58503 1.21695 1.08990 1.17302 0.94111 0.95034 0.85585 1.20448 0.97053 1.09423 0.99904 1.20846 0.98431 0.98877 0.92773 1.21368 0.97105 1.03751 0.99163 1.17824 0.93323 0.88516 0.91646 1.19743 0.94860 1.46726 0.91935 0.91896 1.26719 0.97859 0.91336 1.02112 1.69850 1.16657 1.36771 1.22550 0.85188 0.78487 0.79258 0.76617 1.19237 1.18192 1.18281 1.20916 1.00633 1.07144 0.96794 1.20206 0.92721 0.96567 1.00251 1.20730 0.99590 0.93195 1.02846 0.89245 0.90193 0.91587 0.82955 0.83238 0.86136 0.90912 0.89586 0.88580 0.74341 0.84898 0.85623 0.87483 0.90205 0.90195 0.89004 0.90429 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 9.60 71.24 0.68 -1.18 16 2 C -0.09 -2.10 5.88 -19.88 -0.12 -2.21 16 3 C -0.12 -2.37 9.70 22.29 0.22 -2.15 16 4 C -0.12 -2.58 10.04 22.25 0.22 -2.36 16 5 C -0.13 -3.54 9.97 22.39 0.22 -3.32 16 6 C 0.14 4.07 4.44 38.15 0.17 4.24 16 7 N -0.58 -17.33 2.04 -671.55 -1.37 -18.70 16 8 C 0.07 1.33 10.24 127.77 1.31 2.64 16 9 C 0.70 28.08 7.31 179.05 1.31 29.39 16 10 O -0.61 -31.99 14.03 -4.01 -0.06 -32.05 16 11 N -0.67 -24.74 5.22 -317.31 -1.66 -26.40 16 12 C 0.17 8.14 6.26 38.10 0.24 8.38 16 13 C -0.25 -10.60 9.97 22.58 0.23 -10.38 16 14 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 15 C -0.19 -10.69 8.66 22.75 0.20 -10.50 16 16 C 0.09 5.33 5.55 -21.31 -0.12 5.21 16 17 C -0.50 -30.12 9.06 23.46 0.21 -29.91 16 18 H 0.06 3.74 7.87 -2.91 -0.02 3.72 16 19 C 0.03 1.81 5.25 85.25 0.45 2.26 16 20 N -0.83 -46.43 10.81 21.82 0.24 -46.19 16 21 Si 0.98 41.50 29.57 68.60 2.03 43.53 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 C -0.23 -13.14 8.39 22.85 0.19 -12.95 16 26 C -0.10 -2.66 5.90 -19.74 -0.12 -2.78 16 27 C -0.11 -2.77 9.36 71.24 0.67 -2.10 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.07 1.17 5.94 -2.39 -0.01 1.15 16 31 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 33 H 0.12 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.26 6.29 -2.39 -0.02 1.24 16 36 H 0.10 1.34 8.05 -2.39 -0.02 1.32 16 37 H 0.42 11.22 6.51 -92.71 -0.60 10.62 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.11 6.11 6.18 -2.91 -0.02 6.09 16 41 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 42 H 0.08 4.85 6.44 -2.91 -0.02 4.83 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 1.85 5.94 -2.39 -0.01 1.83 16 45 H 0.03 1.10 6.90 -2.39 -0.02 1.08 16 Total: -1.00 -79.34 369.82 5.78 -73.56 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.41 Total: 37.98 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 6.18 Total: -31.72 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -2.79 Total: -91.30 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.06 Total: -32.05 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -79.34 5.78 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562816709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.255 kcal (2) G-P(sol) polarization free energy of solvation -79.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds