Wall clock time and date at job start Tue Mar 31 2020 13:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30815 * 119.22700 * 2 1 4 4 C 1.33798 * 121.71696 * 179.97438 * 3 2 1 5 5 C 1.40538 * 120.82670 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.81167 * 179.97438 * 5 4 3 7 7 C 1.39353 * 121.09364 * 0.02562 * 6 5 4 8 8 C 1.36130 * 120.83698 * 359.97438 * 7 6 5 9 9 C 1.40551 * 119.61890 * 0.02562 * 8 7 6 10 10 C 1.40499 * 121.22062 * 180.02562 * 9 8 7 11 11 C 1.50697 * 121.01491 * 359.95937 * 10 9 8 12 12 C 1.39037 * 117.96245 * 179.97438 * 10 9 8 13 13 C 1.47759 * 120.26817 * 179.97438 * 12 10 9 14 14 O 1.21564 * 119.99907 * 270.01754 * 13 12 10 15 15 N 1.34778 * 120.00080 * 90.01879 * 13 12 10 16 16 C 1.46504 * 119.99931 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47299 * 178.29452 * 16 15 13 18 18 C 1.50705 * 115.55061 * 65.13812 * 17 16 15 19 19 H 1.07999 * 120.00201 * 265.40754 * 18 17 16 20 20 C 1.37877 * 119.99802 * 85.40558 * 18 17 16 21 21 N 1.31518 * 120.00141 * 353.56207 * 20 18 17 22 22 Si 1.86799 * 119.99911 * 173.55834 * 20 18 17 23 23 H 1.48496 * 109.47163 * 60.00206 * 22 20 18 24 24 H 1.48502 * 109.47085 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47355 * 300.00042 * 22 20 18 26 26 C 1.53004 * 117.49938 * 279.47391 * 17 16 15 27 27 C 1.52994 * 117.50061 * 210.81134 * 17 16 15 28 28 H 1.09004 * 109.46896 * 89.99736 * 1 2 3 29 29 H 1.09002 * 109.47265 * 209.99112 * 1 2 3 30 30 H 1.08994 * 109.47023 * 329.99625 * 1 2 3 31 31 H 1.07995 * 120.09507 * 359.95868 * 5 4 3 32 32 H 1.07995 * 119.45242 * 179.97438 * 6 5 4 33 33 H 1.07993 * 119.57593 * 179.72203 * 7 6 5 34 34 H 1.07998 * 120.19072 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47218 * 270.02014 * 11 10 9 36 36 H 1.08996 * 109.47341 * 30.02034 * 11 10 9 37 37 H 1.09002 * 109.46741 * 150.02231 * 11 10 9 38 38 H 0.96999 * 120.00295 * 0.02562 * 15 13 12 39 39 H 1.09005 * 109.47183 * 298.29690 * 16 15 13 40 40 H 1.08999 * 109.47267 * 58.29150 * 16 15 13 41 41 H 0.96997 * 119.99989 * 185.05884 * 21 20 18 42 42 H 1.09000 * 117.49516 * 359.97438 * 26 17 16 43 43 H 1.08993 * 117.49854 * 145.01885 * 26 17 16 44 44 H 1.09007 * 117.50224 * 214.97578 * 27 17 16 45 45 H 1.08998 * 117.49932 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1997 0.0005 5 6 4.1495 2.4367 0.0010 6 6 5.5105 2.4718 0.0021 7 6 6.2606 1.2974 0.0021 8 6 5.6512 0.0801 0.0016 9 6 4.2476 0.0059 0.0005 10 6 3.5838 -1.2323 0.0005 11 6 4.3552 -2.5269 0.0008 12 6 2.1934 -1.2267 -0.0001 13 6 1.4435 -2.4998 -0.0007 14 8 1.1357 -3.0234 -1.0537 15 7 1.1006 -3.0805 1.1663 16 6 0.3575 -4.3431 1.1656 17 6 0.1345 -4.8044 2.6072 18 6 -0.7449 -3.9133 3.4462 19 1 -0.3021 -3.1558 4.0759 20 6 -2.1148 -4.0650 3.4097 21 7 -2.6615 -4.8981 2.5514 22 14 -3.1943 -3.0873 4.5794 23 1 -2.9878 -1.6353 4.3467 24 1 -4.6195 -3.4296 4.3408 25 1 -2.8337 -3.4201 5.9809 26 6 1.2934 -5.5157 3.3086 27 6 0.0633 -6.3109 2.8639 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 3.5842 3.3569 0.0004 32 1 6.0171 3.4255 0.0021 33 1 7.3391 1.3537 -0.0016 34 1 6.2428 -0.8234 0.0012 35 1 4.5416 -2.8389 -1.0268 36 1 5.3054 -2.3836 0.5150 37 1 3.7763 -3.2946 0.5142 38 1 1.3458 -2.6625 2.0065 39 1 -0.6062 -4.1972 0.6776 40 1 0.9271 -5.0997 0.6260 41 1 -3.6270 -4.9511 2.4747 42 1 2.2145 -5.6554 2.7428 43 1 1.4194 -5.3395 4.3768 44 1 -0.6193 -6.6577 3.6398 45 1 0.1749 -6.9735 2.0056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639856449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:13 Heat of formation + Delta-G solvation = 30.018370 kcal Electronic energy + Delta-G solvation = -27083.535654 eV Core-core repulsion = 23452.033106 eV Total energy + Delta-G solvation = -3631.502547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15005 -39.14195 -37.24831 -36.63465 -34.76827 -33.36180 -32.07327 -31.97351 -30.55713 -28.17928 -27.88594 -26.45345 -25.34971 -23.86180 -22.66947 -21.28471 -20.83920 -20.34864 -19.49708 -18.17646 -17.79308 -16.58709 -16.16710 -15.79655 -15.28614 -14.83069 -14.70756 -14.64531 -14.31020 -14.12881 -13.75122 -13.61703 -13.38368 -13.15215 -12.88000 -12.76583 -12.65895 -12.40251 -11.96230 -11.82594 -11.76536 -11.65828 -11.50199 -11.38237 -11.03411 -10.96084 -10.58615 -10.34441 -10.24714 -9.94250 -9.66090 -9.29262 -9.03577 -8.71852 -8.54431 -8.38728 -8.29110 -8.16984 -6.12066 -4.21214 0.22717 0.65036 1.82784 2.71375 2.96146 3.24886 3.31148 3.32910 3.67062 3.95596 4.14012 4.32255 4.36312 4.49947 4.63180 4.71646 4.94864 5.04756 5.13734 5.16920 5.21603 5.28238 5.34548 5.44631 5.46570 5.74141 5.77006 5.78546 5.86988 5.89854 5.95110 5.97156 6.20951 6.20968 6.26376 6.28226 6.39596 6.44572 6.48122 6.63198 6.70639 6.79640 7.03710 7.14738 7.35971 7.42057 7.77278 7.88355 8.13727 8.28545 8.68615 8.79950 9.46225 10.95579 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.003545 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.936142 B = 7896.831597 C = 8640.867960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.204 3.796 3 N -0.484 5.484 4 C 0.144 3.856 5 C -0.098 4.098 6 C -0.099 4.099 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.110 4.110 10 C 0.013 3.987 11 C -0.126 4.126 12 C -0.173 4.173 13 C 0.559 3.441 14 O -0.543 6.543 15 N -0.692 5.692 16 C 0.162 3.838 17 C 0.028 3.972 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.076 3.924 21 N -0.874 5.874 22 Si 0.889 3.111 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.211 4.211 27 C -0.147 4.147 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.402 0.598 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.537 10.144 -4.111 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.051 3.949 3 N -0.193 5.193 4 C 0.022 3.978 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.145 4.145 8 C -0.106 4.106 9 C -0.113 4.113 10 C 0.005 3.995 11 C -0.182 4.182 12 C -0.178 4.178 13 C 0.343 3.657 14 O -0.421 6.421 15 N -0.340 5.340 16 C 0.039 3.961 17 C 0.027 3.973 18 C -0.540 4.540 19 H 0.078 0.922 20 C -0.128 4.128 21 N -0.509 5.509 22 Si 0.716 3.284 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.248 4.248 27 C -0.185 4.185 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.236 0.764 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.710 10.445 -4.869 18.687 hybrid contribution -0.138 -0.054 0.990 1.001 sum 14.572 10.391 -3.879 18.313 Atomic orbital electron populations 1.20929 0.87793 1.04670 1.03927 1.21477 0.97191 0.86411 0.89833 1.67810 1.08206 1.28057 1.15250 1.18934 0.89133 0.92874 0.96843 1.20792 0.94167 0.96336 1.00340 1.20915 0.93692 0.98679 0.98555 1.20875 1.00215 0.92300 1.01095 1.21045 0.92595 0.98577 0.98406 1.18615 0.94790 0.93044 1.04809 1.20461 0.92171 0.95118 0.91784 1.20958 1.00167 0.93346 1.03707 1.20847 0.93992 0.95635 1.07329 1.17887 0.79568 0.83497 0.84770 1.90782 1.55606 1.64353 1.31366 1.46071 1.55343 1.25191 1.07430 1.21083 0.94850 0.82199 0.97958 1.19012 0.95144 0.92189 0.90907 1.20296 0.90314 1.17976 1.25460 0.92237 1.24967 0.98005 0.94654 0.95222 1.69958 1.11150 1.35517 1.34302 0.86713 0.79537 0.80449 0.81660 1.20127 1.21237 1.20198 1.23029 0.92221 1.09622 0.99942 1.22494 0.98799 0.95574 1.01611 0.89580 0.89432 0.89751 0.84726 0.85395 0.85576 0.85061 0.89563 0.90276 0.90098 0.76355 0.90617 0.94245 0.92717 0.91684 0.90328 0.89780 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.76 36.01 0.35 -1.41 16 2 C 0.20 3.32 6.82 -82.15 -0.56 2.76 16 3 N -0.48 -7.67 10.20 -6.93 -0.07 -7.74 16 4 C 0.14 2.05 6.61 -84.78 -0.56 1.49 16 5 C -0.10 -1.11 9.97 -39.47 -0.39 -1.50 16 6 C -0.10 -0.88 9.94 -39.92 -0.40 -1.27 16 7 C -0.13 -1.10 9.96 -39.92 -0.40 -1.50 16 8 C -0.09 -0.89 9.31 -39.47 -0.37 -1.26 16 9 C -0.11 -1.47 5.74 -106.81 -0.61 -2.09 16 10 C 0.01 0.18 5.99 -103.48 -0.62 -0.44 16 11 C -0.13 -1.46 9.21 36.00 0.33 -1.13 16 12 C -0.17 -2.85 5.64 -104.83 -0.59 -3.44 16 13 C 0.56 10.45 4.24 -12.37 -0.05 10.40 16 14 O -0.54 -11.93 17.11 5.31 0.09 -11.84 16 15 N -0.69 -13.04 5.46 -61.28 -0.33 -13.37 16 16 C 0.16 3.50 5.50 -4.04 -0.02 3.48 16 17 C 0.03 0.64 1.38 -155.66 -0.21 0.42 16 18 C -0.50 -12.52 8.63 -34.44 -0.30 -12.82 16 19 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 20 C 0.08 1.96 5.39 -17.82 -0.10 1.86 16 21 N -0.87 -23.55 12.91 55.43 0.72 -22.83 16 22 Si 0.89 20.16 29.55 -169.99 -5.02 15.14 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.21 -4.20 9.96 -26.69 -0.27 -4.46 16 27 C -0.15 -3.23 9.42 -26.69 -0.25 -3.48 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.13 1.03 6.44 -52.49 -0.34 0.69 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.70 6.51 -51.93 -0.34 0.36 16 37 H 0.08 1.04 7.17 -51.93 -0.37 0.67 16 38 H 0.40 7.18 8.35 -40.82 -0.34 6.83 16 39 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 40 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 41 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -29.68 379.04 -10.30 -39.98 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.37 Total: 9.35 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -5.02 Total: -14.39 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.31 Total: -43.94 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.68 -10.30 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639856449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.995 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds