Wall clock time and date at job start Tue Mar 31 2020 13:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30815 * 119.22700 * 2 1 4 4 C 1.33798 * 121.71696 * 179.97438 * 3 2 1 5 5 C 1.40538 * 120.82670 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.81167 * 179.97438 * 5 4 3 7 7 C 1.39353 * 121.09364 * 0.02562 * 6 5 4 8 8 C 1.36130 * 120.83698 * 359.97438 * 7 6 5 9 9 C 1.40551 * 119.61890 * 0.02562 * 8 7 6 10 10 C 1.40499 * 121.22062 * 180.02562 * 9 8 7 11 11 C 1.50697 * 121.01491 * 359.95937 * 10 9 8 12 12 C 1.39037 * 117.96245 * 179.97438 * 10 9 8 13 13 C 1.47759 * 120.26817 * 179.97438 * 12 10 9 14 14 O 1.21564 * 119.99907 * 270.01754 * 13 12 10 15 15 N 1.34778 * 120.00080 * 90.01879 * 13 12 10 16 16 C 1.46504 * 119.99931 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47299 * 178.29452 * 16 15 13 18 18 C 1.50705 * 115.55061 * 65.13812 * 17 16 15 19 19 H 1.07999 * 120.00201 * 265.40754 * 18 17 16 20 20 C 1.37877 * 119.99802 * 85.40558 * 18 17 16 21 21 N 1.31518 * 120.00141 * 353.56207 * 20 18 17 22 22 Si 1.86799 * 119.99911 * 173.55834 * 20 18 17 23 23 H 1.48496 * 109.47163 * 60.00206 * 22 20 18 24 24 H 1.48502 * 109.47085 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47355 * 300.00042 * 22 20 18 26 26 C 1.53004 * 117.49938 * 279.47391 * 17 16 15 27 27 C 1.52994 * 117.50061 * 210.81134 * 17 16 15 28 28 H 1.09004 * 109.46896 * 89.99736 * 1 2 3 29 29 H 1.09002 * 109.47265 * 209.99112 * 1 2 3 30 30 H 1.08994 * 109.47023 * 329.99625 * 1 2 3 31 31 H 1.07995 * 120.09507 * 359.95868 * 5 4 3 32 32 H 1.07995 * 119.45242 * 179.97438 * 6 5 4 33 33 H 1.07993 * 119.57593 * 179.72203 * 7 6 5 34 34 H 1.07998 * 120.19072 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47218 * 270.02014 * 11 10 9 36 36 H 1.08996 * 109.47341 * 30.02034 * 11 10 9 37 37 H 1.09002 * 109.46741 * 150.02231 * 11 10 9 38 38 H 0.96999 * 120.00295 * 0.02562 * 15 13 12 39 39 H 1.09005 * 109.47183 * 298.29690 * 16 15 13 40 40 H 1.08999 * 109.47267 * 58.29150 * 16 15 13 41 41 H 0.96997 * 119.99989 * 185.05884 * 21 20 18 42 42 H 1.09000 * 117.49516 * 359.97438 * 26 17 16 43 43 H 1.08993 * 117.49854 * 145.01885 * 26 17 16 44 44 H 1.09007 * 117.50224 * 214.97578 * 27 17 16 45 45 H 1.08998 * 117.49932 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1997 0.0005 5 6 4.1495 2.4367 0.0010 6 6 5.5105 2.4718 0.0021 7 6 6.2606 1.2974 0.0021 8 6 5.6512 0.0801 0.0016 9 6 4.2476 0.0059 0.0005 10 6 3.5838 -1.2323 0.0005 11 6 4.3552 -2.5269 0.0008 12 6 2.1934 -1.2267 -0.0001 13 6 1.4435 -2.4998 -0.0007 14 8 1.1357 -3.0234 -1.0537 15 7 1.1006 -3.0805 1.1663 16 6 0.3575 -4.3431 1.1656 17 6 0.1345 -4.8044 2.6072 18 6 -0.7449 -3.9133 3.4462 19 1 -0.3021 -3.1558 4.0759 20 6 -2.1148 -4.0650 3.4097 21 7 -2.6615 -4.8981 2.5514 22 14 -3.1943 -3.0873 4.5794 23 1 -2.9878 -1.6353 4.3467 24 1 -4.6195 -3.4296 4.3408 25 1 -2.8337 -3.4201 5.9809 26 6 1.2934 -5.5157 3.3086 27 6 0.0633 -6.3109 2.8639 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 3.5842 3.3569 0.0004 32 1 6.0171 3.4255 0.0021 33 1 7.3391 1.3537 -0.0016 34 1 6.2428 -0.8234 0.0012 35 1 4.5416 -2.8389 -1.0268 36 1 5.3054 -2.3836 0.5150 37 1 3.7763 -3.2946 0.5142 38 1 1.3458 -2.6625 2.0065 39 1 -0.6062 -4.1972 0.6776 40 1 0.9271 -5.0997 0.6260 41 1 -3.6270 -4.9511 2.4747 42 1 2.2145 -5.6554 2.7428 43 1 1.4194 -5.3395 4.3768 44 1 -0.6193 -6.6577 3.6398 45 1 0.1749 -6.9735 2.0056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639856449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:12 Heat of formation + Delta-G solvation = 13.483104 kcal Electronic energy + Delta-G solvation = -27084.252677 eV Core-core repulsion = 23452.033106 eV Total energy + Delta-G solvation = -3632.219570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21159 -40.55033 -38.58511 -38.02888 -35.80304 -34.97992 -33.96958 -33.08005 -31.45531 -29.24368 -28.95320 -28.07454 -27.15980 -24.99214 -23.59134 -22.97467 -21.82891 -21.74448 -21.27124 -19.36772 -18.95129 -18.04714 -17.59597 -17.00035 -16.71123 -16.49871 -16.02023 -15.81926 -15.68769 -15.20642 -14.91670 -14.81524 -14.66645 -14.41396 -14.34053 -13.85877 -13.84342 -13.59503 -13.47692 -13.37991 -12.99598 -12.93629 -12.80572 -12.62351 -12.41196 -12.37733 -12.34776 -12.04204 -11.55912 -11.28228 -11.16841 -10.87309 -10.55574 -10.44831 -10.10024 -9.89394 -9.72020 -9.18947 -8.09933 -6.22808 -0.72047 -0.34933 0.90297 1.42879 1.44647 1.48047 1.50530 1.77623 2.24416 2.42711 3.00229 3.09439 3.18244 3.38648 3.45795 3.50483 3.65170 3.87673 3.98363 4.21001 4.23532 4.27352 4.33351 4.36954 4.46996 4.53590 4.54730 4.57220 4.64309 4.68423 4.70668 4.88191 4.93490 4.97802 5.00368 5.02297 5.06942 5.13465 5.27844 5.40365 5.45970 5.49844 5.51049 5.59107 5.65671 5.77632 5.89548 6.36552 6.59694 6.80292 6.83857 7.18062 7.46859 8.97156 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.003545 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.936142 B = 7896.831597 C = 8640.867960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.185 3.815 3 N -0.498 5.498 4 C 0.118 3.882 5 C -0.121 4.121 6 C -0.079 4.079 7 C -0.115 4.115 8 C -0.092 4.092 9 C -0.125 4.125 10 C 0.020 3.980 11 C -0.125 4.125 12 C -0.204 4.204 13 C 0.572 3.428 14 O -0.582 6.582 15 N -0.686 5.686 16 C 0.179 3.821 17 C 0.006 3.994 18 C -0.507 4.507 19 H 0.060 0.940 20 C 0.030 3.970 21 N -0.904 5.904 22 Si 0.943 3.057 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.271 1.271 26 C -0.177 4.177 27 C -0.157 4.157 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.408 0.592 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.259 0.741 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.578 11.864 -3.447 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.032 3.968 3 N -0.208 5.208 4 C -0.003 4.003 5 C -0.139 4.139 6 C -0.098 4.098 7 C -0.132 4.132 8 C -0.111 4.111 9 C -0.127 4.127 10 C 0.012 3.988 11 C -0.181 4.181 12 C -0.209 4.209 13 C 0.357 3.643 14 O -0.463 6.463 15 N -0.333 5.333 16 C 0.055 3.945 17 C 0.005 3.995 18 C -0.544 4.544 19 H 0.078 0.922 20 C -0.171 4.171 21 N -0.542 5.542 22 Si 0.770 3.230 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.196 1.196 26 C -0.214 4.214 27 C -0.195 4.195 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.176 0.824 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.243 0.757 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.771 12.186 -4.177 22.766 hybrid contribution -1.173 -0.459 0.764 1.473 sum 17.598 11.726 -3.413 21.420 Atomic orbital electron populations 1.20840 0.88140 1.03996 1.03817 1.21448 0.97282 0.86787 0.91300 1.67781 1.09572 1.27646 1.15834 1.19448 0.88778 0.94643 0.97427 1.21012 0.95531 0.95500 1.01869 1.21418 0.92646 1.00687 0.95062 1.21402 1.02248 0.91313 0.98286 1.21392 0.91061 1.00657 0.97967 1.18854 0.96448 0.92086 1.05315 1.20802 0.91360 0.96788 0.89835 1.21054 1.01104 0.91544 1.04386 1.20608 0.95034 0.94056 1.11226 1.18155 0.78589 0.83770 0.83759 1.90743 1.57181 1.65731 1.32626 1.45924 1.54957 1.24468 1.07982 1.20664 0.93228 0.83430 0.97159 1.19019 0.97040 0.92221 0.91229 1.20595 0.90757 1.17927 1.25141 0.92220 1.25618 0.99350 0.95685 0.96431 1.70077 1.10976 1.37185 1.35923 0.85845 0.77790 0.79345 0.80055 1.19746 1.21608 1.19647 1.23020 0.92030 1.06068 1.00280 1.22430 1.00075 0.95409 1.01566 0.89524 0.91690 0.88632 0.84135 0.81716 0.81587 0.82382 0.88864 0.86826 0.91616 0.75683 0.94744 0.93906 0.93161 0.89039 0.89751 0.91869 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.60 9.76 71.24 0.69 -2.91 16 2 C 0.18 6.27 6.82 43.28 0.30 6.56 16 3 N -0.50 -16.08 10.20 -175.85 -1.79 -17.87 16 4 C 0.12 3.27 6.61 40.28 0.27 3.53 16 5 C -0.12 -2.46 9.97 22.34 0.22 -2.24 16 6 C -0.08 -1.04 9.94 22.05 0.22 -0.82 16 7 C -0.11 -1.36 9.96 22.05 0.22 -1.14 16 8 C -0.09 -1.49 9.31 22.34 0.21 -1.29 16 9 C -0.13 -3.10 5.74 -21.28 -0.12 -3.22 16 10 C 0.02 0.56 5.99 -19.12 -0.11 0.45 16 11 C -0.12 -2.67 9.21 71.24 0.66 -2.02 16 12 C -0.20 -6.91 5.64 -20.00 -0.11 -7.02 16 13 C 0.57 22.29 4.24 86.76 0.37 22.66 16 14 O -0.58 -26.88 17.11 -3.92 -0.07 -26.94 16 15 N -0.69 -26.70 5.46 -466.05 -2.55 -29.25 16 16 C 0.18 8.02 5.50 86.38 0.48 8.49 16 17 C 0.01 0.26 1.38 -52.93 -0.07 0.18 16 18 C -0.51 -25.60 8.63 25.60 0.22 -25.37 16 19 H 0.06 2.95 7.82 -2.91 -0.02 2.92 16 20 C 0.03 1.59 5.39 84.65 0.46 2.05 16 21 N -0.90 -50.47 12.91 21.45 0.28 -50.20 16 22 Si 0.94 42.11 29.55 68.60 2.03 44.13 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C -0.18 -6.80 9.96 30.62 0.30 -6.50 16 27 C -0.16 -6.94 9.42 30.62 0.29 -6.65 16 28 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.06 2.36 7.02 -2.39 -0.02 2.34 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 34 H 0.16 1.65 6.44 -2.91 -0.02 1.63 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 1.58 6.51 -2.39 -0.02 1.57 16 37 H 0.06 1.62 7.17 -2.39 -0.02 1.61 16 38 H 0.41 14.90 8.35 -92.71 -0.77 14.12 16 39 H 0.03 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.04 1.86 8.09 -2.39 -0.02 1.84 16 41 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 42 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 45 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -67.67 379.04 2.61 -65.06 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.24 Total: 30.31 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.47 Total: -15.25 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -4.06 Total: -97.32 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.07 Total: -26.94 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.67 2.61 -65.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639856449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.543 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds