Wall clock time and date at job start Tue Mar 31 2020 14:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38308 * 119.96448 * 2 1 4 4 C 1.38258 * 120.13912 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.07309 * 359.68680 * 4 3 2 6 6 C 1.38858 * 119.92438 * 0.60951 * 5 4 3 7 7 N 1.39930 * 120.06540 * 179.67743 * 6 5 4 8 8 C 1.46494 * 120.00237 * 269.72897 * 7 6 5 9 9 C 1.34778 * 119.99717 * 89.73607 * 7 6 5 10 10 O 1.21583 * 120.00128 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00130 * 180.27085 * 9 7 6 12 12 C 1.39224 * 120.00398 * 174.54228 * 11 9 7 13 13 C 1.39479 * 119.83812 * 145.27281 * 12 11 9 14 14 C 1.36365 * 120.17208 * 179.76148 * 13 12 11 15 15 C 1.40874 * 119.82879 * 0.51422 * 14 13 12 16 16 C 1.41154 * 120.16545 * 179.71799 * 15 14 13 17 17 H 1.07998 * 119.99838 * 205.37548 * 16 15 14 18 18 C 1.39891 * 120.00229 * 25.37864 * 16 15 14 19 19 N 1.30884 * 119.99700 * 16.82280 * 18 16 15 20 20 Si 1.86792 * 120.00229 * 196.82201 * 18 16 15 21 21 H 1.48506 * 109.47150 * 90.00039 * 20 18 16 22 22 H 1.48504 * 109.47306 * 209.99973 * 20 18 16 23 23 H 1.48498 * 109.47141 * 329.99891 * 20 18 16 24 24 C 1.40872 * 119.66919 * 359.74347 * 15 14 13 25 25 C 1.36371 * 119.82852 * 359.97438 * 24 15 14 26 26 C 1.38088 * 119.96287 * 180.02562 * 2 1 3 27 27 C 1.50697 * 120.03762 * 0.02562 * 26 2 1 28 28 H 1.08993 * 109.47391 * 269.97520 * 1 2 3 29 29 H 1.09008 * 109.47414 * 29.97755 * 1 2 3 30 30 H 1.08996 * 109.47206 * 149.97001 * 1 2 3 31 31 H 1.08003 * 119.92466 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.96440 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.03776 * 180.30070 * 5 4 3 34 34 H 1.08996 * 109.47296 * 270.00328 * 8 7 6 35 35 H 1.09001 * 109.47132 * 30.00837 * 8 7 6 36 36 H 1.09004 * 109.47269 * 150.00670 * 8 7 6 37 37 H 0.96997 * 119.99793 * 354.54760 * 11 9 7 38 38 H 1.08005 * 119.91117 * 0.02629 * 13 12 11 39 39 H 1.08001 * 120.09321 * 180.25612 * 14 13 12 40 40 H 0.97002 * 120.00013 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.08569 * 179.97438 * 24 15 14 42 42 H 1.08007 * 119.91198 * 179.97438 * 25 24 15 43 43 H 1.09004 * 109.47236 * 269.98107 * 27 26 2 44 44 H 1.08996 * 109.47002 * 29.97974 * 27 26 2 45 45 H 1.09004 * 109.47146 * 149.98340 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0005 5 6 4.2762 0.0092 0.0055 6 6 3.5856 -1.1955 -0.0008 7 7 4.2875 -2.4060 -0.0015 8 6 4.6548 -3.0390 -1.2706 9 6 4.6256 -2.9896 1.1653 10 8 4.3211 -2.4641 2.2186 11 7 5.3065 -4.1527 1.1647 12 6 5.7547 -4.6977 2.3649 13 6 5.7811 -6.0823 2.5313 14 6 6.2234 -6.6235 3.7022 15 6 6.6442 -5.7801 4.7492 16 6 7.0977 -6.3326 5.9664 17 1 7.0311 -5.7578 6.8783 18 6 7.6335 -7.6246 5.9915 19 7 8.0205 -8.1942 4.8785 20 14 7.7966 -8.5367 7.6134 21 1 6.5575 -9.3136 7.8712 22 1 8.9561 -9.4622 7.5465 23 1 8.0059 -7.5597 8.7119 24 6 6.6095 -4.3825 4.5756 25 6 6.1701 -3.8561 3.3968 26 6 2.1967 -1.1963 -0.0005 27 6 1.4432 -2.5014 -0.0017 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5143 31 1 1.6560 2.1325 0.0004 32 1 4.1169 2.1397 -0.0001 33 1 5.3562 0.0132 0.0099 34 1 3.8569 -3.7114 -1.5855 35 1 4.8038 -2.2712 -2.0298 36 1 5.5771 -3.6053 -1.1407 37 1 5.4843 -4.6101 0.3280 38 1 5.4544 -6.7275 1.7292 39 1 6.2472 -7.6959 3.8282 40 1 8.3924 -9.0900 4.8959 41 1 6.9302 -3.7296 5.3739 42 1 6.1426 -2.7848 3.2623 43 1 1.2614 -2.8169 1.0257 44 1 0.4909 -2.3706 -0.5155 45 1 2.0324 -3.2607 -0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666431850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:47 Heat of formation + Delta-G solvation = 28.720230 kcal Electronic energy + Delta-G solvation = -26576.573935 eV Core-core repulsion = 22945.015096 eV Total energy + Delta-G solvation = -3631.558839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71225 -39.17266 -37.41542 -35.43961 -34.46374 -33.46411 -32.96226 -31.11535 -29.52416 -28.79908 -27.83127 -26.73969 -26.25046 -24.89447 -22.63635 -21.31098 -20.93189 -20.56650 -19.32152 -17.98010 -17.28286 -16.82645 -16.37269 -16.07325 -15.44254 -15.13140 -14.69758 -14.33462 -14.00476 -13.87719 -13.67030 -13.38084 -13.06385 -12.96919 -12.77747 -12.74651 -12.63110 -12.60219 -12.06801 -11.99586 -11.79304 -11.74546 -11.46525 -11.34980 -11.11975 -11.03183 -10.89546 -10.50756 -10.10226 -9.71782 -9.52424 -9.24546 -8.77694 -8.73052 -8.65113 -8.59592 -7.51019 -6.94337 -6.73418 -4.26209 1.22342 1.32155 2.65151 2.87018 3.08096 3.12484 3.12888 3.16938 3.61577 3.67882 3.95408 4.37999 4.66328 4.71205 4.78650 4.91628 4.95842 5.04665 5.17579 5.23185 5.38592 5.41809 5.50047 5.59729 5.67561 5.72249 5.73193 5.74372 5.87979 6.18154 6.20905 6.32477 6.40666 6.43332 6.54886 6.59852 6.76212 6.80599 7.06048 7.10018 7.21010 7.28440 7.35430 7.64245 7.86899 7.98072 8.08049 8.31385 8.44179 8.63381 8.91884 8.93989 9.11919 10.20656 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.002525 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.107494 B =11088.476793 C =11233.641359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.168 3.832 7 N -0.599 5.599 8 C 0.081 3.919 9 C 0.699 3.301 10 O -0.564 6.564 11 N -0.663 5.663 12 C 0.012 3.988 13 C -0.114 4.114 14 C -0.152 4.152 15 C 0.105 3.895 16 C -0.459 4.459 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.214 4.214 25 C -0.076 4.076 26 C -0.074 4.074 27 C -0.114 4.114 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.391 0.609 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.280 0.720 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 10.739 -14.629 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.131 4.131 6 C 0.077 3.923 7 N -0.335 5.335 8 C -0.061 4.061 9 C 0.402 3.598 10 O -0.439 6.439 11 N -0.310 5.310 12 C -0.081 4.081 13 C -0.134 4.134 14 C -0.172 4.172 15 C 0.102 3.898 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.234 4.234 25 C -0.096 4.096 26 C -0.076 4.076 27 C -0.170 4.170 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.674 10.879 -13.939 20.155 hybrid contribution 0.411 -0.723 0.184 0.852 sum -9.263 10.156 -13.755 19.446 Atomic orbital electron populations 1.20837 0.91177 1.02626 1.02505 1.19620 0.95971 0.92199 1.00847 1.21005 0.94202 0.97295 1.00948 1.20949 0.94166 0.97515 1.00964 1.21326 1.00143 0.91760 0.99827 1.17039 0.89312 0.84544 1.01387 1.44427 1.60788 1.22783 1.05518 1.21770 1.00415 0.98463 0.85469 1.15903 0.79048 0.81765 0.83120 1.90940 1.58983 1.64853 1.29168 1.42233 1.57018 1.22643 1.09147 1.16956 1.12220 0.91617 0.87272 1.20190 1.03316 0.91869 0.98074 1.20882 1.02996 1.00002 0.93331 1.17657 0.88454 0.90733 0.92908 1.19552 1.35413 0.98635 0.95238 0.90407 1.25906 0.92929 0.97449 0.97951 1.69843 1.29454 1.14503 1.28410 0.86306 0.78489 0.79541 0.82340 1.19307 1.20372 1.18632 1.20662 1.10398 0.95098 0.97225 1.20259 0.97972 0.97737 0.93626 1.19979 0.92832 0.95405 0.99388 1.20788 0.99337 0.94042 1.02839 0.91063 0.91679 0.91201 0.86052 0.85845 0.86006 0.92580 0.90848 0.90893 0.77404 0.89277 0.86079 0.90959 0.88750 0.88117 0.90816 0.91342 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.60 36.01 0.35 -0.63 16 2 C -0.09 -0.98 5.88 -104.65 -0.62 -1.60 16 3 C -0.12 -1.24 9.70 -39.55 -0.38 -1.62 16 4 C -0.12 -1.31 10.04 -39.61 -0.40 -1.71 16 5 C -0.11 -1.47 9.97 -39.39 -0.39 -1.86 16 6 C 0.17 2.42 4.44 -83.69 -0.37 2.04 16 7 N -0.60 -8.69 1.97 -126.24 -0.25 -8.93 16 8 C 0.08 0.81 9.88 59.84 0.59 1.40 16 9 C 0.70 13.24 7.97 -86.92 -0.69 12.55 16 10 O -0.56 -13.22 14.04 5.29 0.07 -13.15 16 11 N -0.66 -12.28 5.14 -14.10 -0.07 -12.36 16 12 C 0.01 0.27 6.27 -83.58 -0.52 -0.25 16 13 C -0.11 -2.65 9.90 -39.79 -0.39 -3.04 16 14 C -0.15 -3.95 8.63 -39.26 -0.34 -4.29 16 15 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 16 C -0.46 -12.34 9.04 -37.86 -0.34 -12.69 16 17 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 18 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 19 N -0.80 -20.48 10.95 55.54 0.61 -19.87 16 20 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 C -0.21 -5.56 9.74 -39.26 -0.38 -5.95 16 25 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 26 C -0.07 -0.99 5.90 -104.44 -0.62 -1.60 16 27 C -0.11 -1.36 9.36 36.00 0.34 -1.03 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.44 8.09 -51.92 -0.42 0.02 16 30 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.06 0.48 7.40 -51.93 -0.38 0.10 16 35 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 36 H 0.07 0.66 6.44 -51.93 -0.33 0.33 16 37 H 0.39 5.78 6.62 -40.82 -0.27 5.51 16 38 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.12 3.21 6.18 -52.49 -0.32 2.88 16 40 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 41 H 0.09 2.34 8.06 -52.48 -0.42 1.92 16 42 H 0.10 2.51 6.47 -52.48 -0.34 2.17 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.64 5.94 -51.93 -0.31 0.33 16 45 H 0.06 0.76 6.47 -51.93 -0.34 0.43 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -32.04 368.95 -10.26 -42.30 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.95 Total: 11.10 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -5.20 Total: -18.44 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.29 Total: -41.16 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.15 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.04 -10.26 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666431850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.020 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds