Wall clock time and date at job start Tue Mar 31 2020 14:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38308 * 119.96448 * 2 1 4 4 C 1.38258 * 120.13912 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.07309 * 359.68680 * 4 3 2 6 6 C 1.38858 * 119.92438 * 0.60951 * 5 4 3 7 7 N 1.39930 * 120.06540 * 179.67743 * 6 5 4 8 8 C 1.46494 * 120.00237 * 269.72897 * 7 6 5 9 9 C 1.34778 * 119.99717 * 89.73607 * 7 6 5 10 10 O 1.21583 * 120.00128 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00130 * 180.27085 * 9 7 6 12 12 C 1.39224 * 120.00398 * 174.54228 * 11 9 7 13 13 C 1.39479 * 119.83812 * 145.27281 * 12 11 9 14 14 C 1.36365 * 120.17208 * 179.76148 * 13 12 11 15 15 C 1.40874 * 119.82879 * 0.51422 * 14 13 12 16 16 C 1.41154 * 120.16545 * 179.71799 * 15 14 13 17 17 H 1.07998 * 119.99838 * 205.37548 * 16 15 14 18 18 C 1.39891 * 120.00229 * 25.37864 * 16 15 14 19 19 N 1.30884 * 119.99700 * 16.82280 * 18 16 15 20 20 Si 1.86792 * 120.00229 * 196.82201 * 18 16 15 21 21 H 1.48506 * 109.47150 * 90.00039 * 20 18 16 22 22 H 1.48504 * 109.47306 * 209.99973 * 20 18 16 23 23 H 1.48498 * 109.47141 * 329.99891 * 20 18 16 24 24 C 1.40872 * 119.66919 * 359.74347 * 15 14 13 25 25 C 1.36371 * 119.82852 * 359.97438 * 24 15 14 26 26 C 1.38088 * 119.96287 * 180.02562 * 2 1 3 27 27 C 1.50697 * 120.03762 * 0.02562 * 26 2 1 28 28 H 1.08993 * 109.47391 * 269.97520 * 1 2 3 29 29 H 1.09008 * 109.47414 * 29.97755 * 1 2 3 30 30 H 1.08996 * 109.47206 * 149.97001 * 1 2 3 31 31 H 1.08003 * 119.92466 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.96440 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.03776 * 180.30070 * 5 4 3 34 34 H 1.08996 * 109.47296 * 270.00328 * 8 7 6 35 35 H 1.09001 * 109.47132 * 30.00837 * 8 7 6 36 36 H 1.09004 * 109.47269 * 150.00670 * 8 7 6 37 37 H 0.96997 * 119.99793 * 354.54760 * 11 9 7 38 38 H 1.08005 * 119.91117 * 0.02629 * 13 12 11 39 39 H 1.08001 * 120.09321 * 180.25612 * 14 13 12 40 40 H 0.97002 * 120.00013 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.08569 * 179.97438 * 24 15 14 42 42 H 1.08007 * 119.91198 * 179.97438 * 25 24 15 43 43 H 1.09004 * 109.47236 * 269.98107 * 27 26 2 44 44 H 1.08996 * 109.47002 * 29.97974 * 27 26 2 45 45 H 1.09004 * 109.47146 * 149.98340 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0005 5 6 4.2762 0.0092 0.0055 6 6 3.5856 -1.1955 -0.0008 7 7 4.2875 -2.4060 -0.0015 8 6 4.6548 -3.0390 -1.2706 9 6 4.6256 -2.9896 1.1653 10 8 4.3211 -2.4641 2.2186 11 7 5.3065 -4.1527 1.1647 12 6 5.7547 -4.6977 2.3649 13 6 5.7811 -6.0823 2.5313 14 6 6.2234 -6.6235 3.7022 15 6 6.6442 -5.7801 4.7492 16 6 7.0977 -6.3326 5.9664 17 1 7.0311 -5.7578 6.8783 18 6 7.6335 -7.6246 5.9915 19 7 8.0205 -8.1942 4.8785 20 14 7.7966 -8.5367 7.6134 21 1 6.5575 -9.3136 7.8712 22 1 8.9561 -9.4622 7.5465 23 1 8.0059 -7.5597 8.7119 24 6 6.6095 -4.3825 4.5756 25 6 6.1701 -3.8561 3.3968 26 6 2.1967 -1.1963 -0.0005 27 6 1.4432 -2.5014 -0.0017 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5143 31 1 1.6560 2.1325 0.0004 32 1 4.1169 2.1397 -0.0001 33 1 5.3562 0.0132 0.0099 34 1 3.8569 -3.7114 -1.5855 35 1 4.8038 -2.2712 -2.0298 36 1 5.5771 -3.6053 -1.1407 37 1 5.4843 -4.6101 0.3280 38 1 5.4544 -6.7275 1.7292 39 1 6.2472 -7.6959 3.8282 40 1 8.3924 -9.0900 4.8959 41 1 6.9302 -3.7296 5.3739 42 1 6.1426 -2.7848 3.2623 43 1 1.2614 -2.8169 1.0257 44 1 0.4909 -2.3706 -0.5155 45 1 2.0324 -3.2607 -0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666431850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:46 Heat of formation + Delta-G solvation = 13.080803 kcal Electronic energy + Delta-G solvation = -26577.252111 eV Core-core repulsion = 22945.015096 eV Total energy + Delta-G solvation = -3632.237015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.98692 -40.41946 -39.13744 -36.72431 -36.21188 -34.75587 -34.31877 -32.17107 -31.44622 -30.61862 -28.71473 -27.71314 -27.28970 -26.57081 -24.03718 -23.09731 -22.26081 -21.82282 -20.75420 -19.41562 -19.16261 -18.19092 -17.40883 -17.37320 -16.98365 -16.52846 -16.02493 -15.70020 -15.46477 -15.10280 -14.89351 -14.59434 -14.49941 -14.21981 -14.01150 -13.92509 -13.70200 -13.58559 -13.53433 -13.43122 -13.35887 -12.79562 -12.74680 -12.67236 -12.63631 -12.37048 -12.23767 -11.89680 -11.87903 -11.55713 -11.29217 -11.06652 -10.56249 -9.93393 -9.61173 -9.50557 -9.48098 -8.83984 -8.62116 -6.26379 0.27164 0.40613 0.83560 1.13377 1.39649 1.47739 1.52604 1.63059 2.11585 2.22755 2.70799 2.75852 3.04996 3.73226 3.87359 3.92536 4.08421 4.13405 4.22823 4.37311 4.39142 4.44838 4.47046 4.57550 4.61813 4.73207 4.78020 4.83409 4.89111 4.89851 4.94970 5.06472 5.08423 5.14157 5.25869 5.34180 5.42638 5.44165 5.53014 5.55134 5.64653 5.69034 5.77038 6.00819 6.05917 6.12325 6.19318 6.37003 6.65144 6.93093 6.96223 7.00093 7.59590 8.34020 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.002525 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.107494 B =11088.476793 C =11233.641359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.131 4.131 6 C 0.138 3.862 7 N -0.587 5.587 8 C 0.073 3.927 9 C 0.698 3.302 10 O -0.615 6.615 11 N -0.655 5.655 12 C 0.027 3.973 13 C -0.110 4.110 14 C -0.169 4.169 15 C 0.076 3.924 16 C -0.497 4.497 17 H 0.071 0.929 18 C 0.037 3.963 19 N -0.822 5.822 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.262 1.262 24 C -0.232 4.232 25 C -0.086 4.086 26 C -0.095 4.095 27 C -0.109 4.109 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.412 0.588 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.290 0.710 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.095 0.905 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.768 11.007 -16.359 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.151 4.151 6 C 0.047 3.953 7 N -0.321 5.321 8 C -0.068 4.068 9 C 0.401 3.599 10 O -0.494 6.494 11 N -0.304 5.304 12 C -0.067 4.067 13 C -0.130 4.130 14 C -0.189 4.189 15 C 0.073 3.927 16 C -0.526 4.526 17 H 0.089 0.911 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.189 1.189 23 H -0.186 1.186 24 C -0.253 4.253 25 C -0.107 4.107 26 C -0.097 4.097 27 C -0.165 4.165 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.136 0.864 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.843 11.158 -15.767 22.151 hybrid contribution 0.707 -0.649 0.552 1.108 sum -10.135 10.509 -15.215 21.086 Atomic orbital electron populations 1.20895 0.89063 1.04172 1.02869 1.20038 0.97630 0.91848 0.99644 1.21417 0.94152 0.98346 0.99483 1.21285 0.94786 0.97738 0.99778 1.21456 1.00229 0.92402 1.00975 1.17359 0.90113 0.84587 1.03193 1.44347 1.59641 1.22634 1.05449 1.22095 1.01497 0.99410 0.83810 1.16065 0.78663 0.81407 0.83782 1.90902 1.60869 1.66049 1.31593 1.41997 1.56944 1.22845 1.08637 1.16975 1.10076 0.91496 0.88109 1.20442 1.02108 0.92393 0.98099 1.20902 1.04135 0.99538 0.94306 1.17967 0.89519 0.91303 0.93889 1.19750 1.37508 1.00305 0.95072 0.91052 1.26715 0.91850 0.97471 1.01776 1.69868 1.29374 1.15178 1.30374 0.85192 0.78962 0.78078 0.77391 1.18601 1.18914 1.18642 1.20769 1.11469 0.95100 0.97927 1.20319 0.98525 0.97745 0.94087 1.20205 0.92620 0.96614 1.00225 1.20759 1.00631 0.93629 1.01520 0.91138 0.89450 0.90413 0.83019 0.83406 0.86398 0.90649 0.88847 0.89942 0.74954 0.85768 0.86934 0.89956 0.89004 0.88684 0.93346 0.88692 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.60 71.24 0.68 -0.95 16 2 C -0.09 -1.91 5.88 -19.88 -0.12 -2.02 16 3 C -0.12 -2.19 9.70 22.29 0.22 -1.97 16 4 C -0.12 -2.43 10.04 22.25 0.22 -2.21 16 5 C -0.13 -3.41 9.97 22.39 0.22 -3.19 16 6 C 0.14 3.89 4.44 38.15 0.17 4.06 16 7 N -0.59 -16.58 1.97 -671.56 -1.32 -17.91 16 8 C 0.07 1.29 9.88 127.77 1.26 2.56 16 9 C 0.70 26.46 7.97 179.05 1.43 27.88 16 10 O -0.62 -29.60 14.04 -3.98 -0.06 -29.66 16 11 N -0.65 -23.76 5.14 -316.79 -1.63 -25.38 16 12 C 0.03 1.25 6.27 38.57 0.24 1.49 16 13 C -0.11 -5.07 9.90 22.13 0.22 -4.85 16 14 C -0.17 -8.95 8.63 22.48 0.19 -8.76 16 15 C 0.08 4.29 5.57 -21.27 -0.12 4.17 16 16 C -0.50 -27.75 9.04 23.39 0.21 -27.54 16 17 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 18 C 0.04 1.88 5.15 85.23 0.44 2.32 16 19 N -0.82 -42.68 10.95 21.82 0.24 -42.44 16 20 Si 0.98 38.72 29.59 68.60 2.03 40.75 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 24 C -0.23 -12.69 9.74 22.48 0.22 -12.47 16 25 C -0.09 -4.43 8.57 22.13 0.19 -4.24 16 26 C -0.10 -2.43 5.90 -19.74 -0.12 -2.55 16 27 C -0.11 -2.52 9.36 71.23 0.67 -1.85 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 0.87 8.09 -2.38 -0.02 0.85 16 30 H 0.08 0.98 5.94 -2.39 -0.01 0.97 16 31 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.12 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.08 1.09 7.40 -2.39 -0.02 1.07 16 35 H 0.09 1.33 8.05 -2.39 -0.02 1.31 16 36 H 0.08 1.30 6.44 -2.38 -0.02 1.29 16 37 H 0.41 11.37 6.62 -92.71 -0.61 10.76 16 38 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.11 6.09 6.18 -2.91 -0.02 6.07 16 40 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 41 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.10 4.94 6.47 -2.91 -0.02 4.92 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 1.60 5.94 -2.39 -0.01 1.58 16 45 H 0.06 1.43 6.47 -2.38 -0.02 1.41 16 Total: -1.00 -72.70 368.95 5.90 -66.79 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.41 Total: 37.96 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 6.23 Total: -30.11 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.71 Total: -85.73 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.06 Total: -29.66 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -72.70 5.90 -66.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666431850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.873 kcal (2) G-P(sol) polarization free energy of solvation -72.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds