Wall clock time and date at job start Tue Mar 31 2020 14:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38298 * 119.96738 * 2 1 4 4 C 1.38260 * 120.14336 * 179.76495 * 3 2 1 5 5 C 1.38138 * 120.07045 * 0.50633 * 4 3 2 6 6 C 1.38852 * 119.92543 * 359.74814 * 5 4 3 7 7 N 1.39938 * 120.06944 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00155 * 113.25916 * 7 6 5 9 9 C 1.34780 * 119.99515 * 293.26009 * 7 6 5 10 10 O 1.21587 * 120.00312 * 5.09645 * 9 7 6 11 11 N 1.34774 * 119.99341 * 185.09618 * 9 7 6 12 12 C 1.39942 * 119.99817 * 185.21278 * 11 9 7 13 13 C 1.38866 * 120.07041 * 212.94933 * 12 11 9 14 14 C 1.38120 * 119.92676 * 179.74528 * 13 12 11 15 15 C 1.38273 * 120.06972 * 0.52073 * 14 13 12 16 16 C 1.50704 * 119.93165 * 179.70221 * 15 14 13 17 17 C 1.50694 * 109.47135 * 270.02542 * 16 15 14 18 18 H 1.07997 * 120.00403 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99802 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00107 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99949 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47078 * 60.00107 * 21 19 17 23 23 H 1.48504 * 109.46934 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47226 * 299.99775 * 21 19 17 25 25 C 1.38282 * 120.14130 * 359.72901 * 15 14 13 26 26 C 1.38110 * 120.07128 * 0.02562 * 25 15 14 27 27 C 1.38094 * 119.96604 * 180.26687 * 2 1 3 28 28 H 1.08994 * 109.47412 * 269.72605 * 1 2 3 29 29 H 1.08997 * 109.46981 * 29.72806 * 1 2 3 30 30 H 1.08999 * 109.47037 * 149.72717 * 1 2 3 31 31 H 1.07997 * 119.93262 * 359.97438 * 3 2 1 32 32 H 1.08005 * 119.97162 * 180.23151 * 4 3 2 33 33 H 1.07997 * 120.04136 * 179.77026 * 5 4 3 34 34 H 1.09004 * 109.46520 * 89.99986 * 8 7 6 35 35 H 1.08998 * 109.46950 * 209.99565 * 8 7 6 36 36 H 1.08992 * 109.47121 * 330.00259 * 8 7 6 37 37 H 0.96998 * 120.00682 * 5.21171 * 11 9 7 38 38 H 1.07995 * 120.03645 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.96334 * 180.25112 * 14 13 12 40 40 H 1.08998 * 109.46603 * 30.02659 * 16 15 14 41 41 H 1.09003 * 109.47303 * 150.01959 * 16 15 14 42 42 H 0.97000 * 120.00056 * 179.97438 * 20 19 17 43 43 H 1.08007 * 119.96260 * 179.97438 * 25 15 14 44 44 H 1.08000 * 120.03642 * 179.97438 * 26 25 15 45 45 H 1.08008 * 120.03321 * 359.96133 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2023 0.0049 5 6 4.2762 0.0090 -0.0007 6 6 3.5856 -1.1955 -0.0061 7 7 4.2875 -2.4061 -0.0123 8 6 4.2222 -3.2968 1.1491 9 6 5.0235 -2.7527 -1.0869 10 8 5.1531 -1.9742 -2.0118 11 7 5.6158 -3.9623 -1.1361 12 6 6.4680 -4.2813 -2.1993 13 6 6.5405 -5.5876 -2.6650 14 6 7.3787 -5.8981 -3.7180 15 6 8.1530 -4.9121 -4.3013 16 6 9.0714 -5.2558 -5.4457 17 6 10.4227 -5.6466 -4.9053 18 1 10.5989 -5.6466 -3.8398 19 6 11.4340 -6.0052 -5.7712 20 7 11.2191 -6.0067 -7.0688 21 14 13.1089 -6.4903 -5.1014 22 1 12.9634 -7.6702 -4.2116 23 1 14.0139 -6.8288 -6.2291 24 1 13.6812 -5.3570 -4.3312 25 6 8.0868 -3.6115 -3.8365 26 6 7.2470 -3.2934 -2.7872 27 6 2.1967 -1.1963 -0.0056 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3633 0.8924 -0.5096 30 1 -0.3633 -0.8875 -0.5181 31 1 1.6561 2.1324 -0.0004 32 1 4.1170 2.1396 0.0087 33 1 5.3562 0.0129 -0.0007 34 1 3.3889 -3.9892 1.0295 35 1 5.1529 -3.8585 1.2288 36 1 4.0762 -2.7052 2.0528 37 1 5.4515 -4.6118 -0.4347 38 1 5.9396 -6.3590 -2.2068 39 1 7.4326 -6.9130 -4.0834 40 1 8.6516 -6.0878 -6.0111 41 1 9.1778 -4.3897 -6.0989 42 1 11.9306 -6.2586 -7.6780 43 1 8.6932 -2.8436 -4.2940 44 1 7.1961 -2.2775 -2.4243 45 1 1.6567 -2.1317 -0.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673065475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:04 Heat of formation + Delta-G solvation = 28.333107 kcal Electronic energy + Delta-G solvation = -25768.662388 eV Core-core repulsion = 22137.086762 eV Total energy + Delta-G solvation = -3631.575626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07073 -39.48026 -38.23330 -35.85437 -34.94934 -33.07509 -32.73581 -30.87036 -30.26327 -29.90542 -27.52496 -26.96150 -26.40010 -23.78904 -22.59543 -22.30769 -22.02984 -20.43265 -19.72993 -18.43891 -17.38956 -16.77831 -16.31307 -16.27962 -16.03516 -15.08092 -14.89635 -14.66645 -14.29677 -14.19174 -14.01317 -13.82081 -13.46552 -13.36664 -13.06638 -12.94293 -12.76294 -12.61047 -12.53326 -12.20758 -11.98827 -11.76557 -11.45252 -11.35507 -11.24808 -10.80180 -10.60752 -10.38112 -10.16652 -9.90040 -9.56499 -9.43989 -9.26099 -8.99302 -8.62684 -8.39307 -8.25359 -7.33066 -6.00706 -4.04783 1.00912 1.13154 1.96185 2.09791 2.35689 3.07640 3.33621 3.37705 3.40851 3.42994 3.77696 4.40836 4.53885 4.59584 4.60764 4.63495 4.83425 4.93908 5.00098 5.10850 5.20891 5.26015 5.32708 5.32909 5.43788 5.45924 5.51602 5.58700 5.81840 5.88743 5.99896 6.08552 6.14063 6.19805 6.23394 6.29606 6.36770 6.48798 6.68597 6.87311 6.95810 6.97584 7.20374 7.24978 7.55083 7.72068 7.75921 7.90602 7.94944 8.35699 8.43867 9.00293 9.58584 11.08783 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.002162 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.483405 B =12946.956873 C =13160.157175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.122 4.122 4 C -0.106 4.106 5 C -0.106 4.106 6 C 0.164 3.836 7 N -0.593 5.593 8 C 0.077 3.923 9 C 0.704 3.296 10 O -0.555 6.555 11 N -0.677 5.677 12 C 0.121 3.879 13 C -0.145 4.145 14 C -0.107 4.107 15 C -0.044 4.044 16 C 0.048 3.952 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.121 4.121 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.402 0.598 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.695 9.315 19.728 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.125 4.125 5 C -0.126 4.126 6 C 0.073 3.927 7 N -0.327 5.327 8 C -0.065 4.065 9 C 0.407 3.593 10 O -0.429 6.429 11 N -0.325 5.325 12 C 0.029 3.971 13 C -0.165 4.165 14 C -0.126 4.126 15 C -0.045 4.045 16 C 0.011 3.989 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.141 4.141 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.238 0.762 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.503 9.834 18.904 29.571 hybrid contribution 0.930 -0.747 0.746 1.407 sum -19.574 9.087 19.650 29.186 Atomic orbital electron populations 1.20780 0.90917 1.02972 1.02293 1.19747 0.96091 0.92596 0.99667 1.21065 0.94230 0.97524 1.01190 1.21035 0.94164 0.97711 0.99541 1.21267 1.00386 0.91549 0.99398 1.17255 0.89953 0.84395 1.01123 1.44480 1.51308 1.20315 1.16560 1.21854 1.02354 0.94184 0.88110 1.15836 0.78543 0.82641 0.82301 1.90991 1.64297 1.51163 1.36464 1.42580 1.48380 1.15116 1.26459 1.17300 0.93910 0.94280 0.91655 1.20685 1.02338 0.94401 0.99092 1.20863 0.96359 0.99594 0.95741 1.20704 0.94134 0.92130 0.97489 1.18342 0.92380 0.97593 0.90544 1.21030 0.95287 1.45450 0.93121 0.92523 1.25023 0.98906 0.95637 0.94851 1.69953 1.33313 1.48373 1.01688 0.86598 0.83652 0.79048 0.78375 1.20206 1.21273 1.20198 1.20991 0.98158 0.96855 0.96495 1.20999 0.95782 0.98857 0.98042 1.21064 0.92749 0.98155 1.02156 0.91139 0.91365 0.91521 0.85892 0.85572 0.85844 0.92165 0.90683 0.90280 0.76243 0.86879 0.85979 0.95323 0.95303 0.92816 0.86096 0.85817 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.08 -0.70 5.88 -104.66 -0.62 -1.32 16 3 C -0.12 -1.04 9.69 -39.55 -0.38 -1.43 16 4 C -0.11 -1.00 10.04 -39.61 -0.40 -1.40 16 5 C -0.11 -1.22 9.29 -39.39 -0.37 -1.58 16 6 C 0.16 1.88 4.84 -83.69 -0.40 1.48 16 7 N -0.59 -6.61 2.93 -126.23 -0.37 -6.98 16 8 C 0.08 0.51 9.93 59.85 0.59 1.10 16 9 C 0.70 10.39 7.89 -86.92 -0.69 9.71 16 10 O -0.56 -10.51 13.56 5.29 0.07 -10.44 16 11 N -0.68 -9.11 5.14 -14.22 -0.07 -9.18 16 12 C 0.12 2.07 6.28 -83.69 -0.53 1.54 16 13 C -0.14 -2.41 9.96 -39.39 -0.39 -2.80 16 14 C -0.11 -2.09 9.69 -39.61 -0.38 -2.48 16 15 C -0.04 -0.98 5.07 -104.59 -0.53 -1.51 16 16 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 17 C -0.51 -14.41 9.09 -34.44 -0.31 -14.72 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 21 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.11 -2.23 9.69 -39.61 -0.38 -2.62 16 26 C -0.12 -2.24 8.65 -39.40 -0.34 -2.58 16 27 C -0.12 -1.20 9.50 -39.39 -0.37 -1.58 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.41 6.68 -51.93 -0.35 0.07 16 36 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 37 H 0.40 3.88 6.78 -40.82 -0.28 3.60 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 44 H 0.12 2.38 6.40 -52.49 -0.34 2.05 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -34.20 380.83 -10.71 -44.91 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.40 Total: 3.08 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -5.39 Total: -17.86 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.29 Total: -42.08 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.20 -10.71 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673065475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.239 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds