Wall clock time and date at job start Tue Mar 31 2020 14:23:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38375 * 119.92694 * 2 1
4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1
5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2
6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3
7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4
8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5
9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5
10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6
11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47344 * 64.99466 * 11 10 9
13 13 N 1.46509 * 109.46818 * 304.99783 * 11 10 9
14 14 C 1.36937 * 119.99708 * 154.99760 * 13 11 10
15 15 H 1.07991 * 120.00633 * 0.02562 * 14 13 11
16 16 C 1.38816 * 119.99625 * 180.02562 * 14 13 11
17 17 N 1.31621 * 119.99667 * 0.02562 * 16 14 13
18 18 Si 1.86795 * 120.00109 * 180.02562 * 16 14 13
19 19 H 1.48503 * 109.47180 * 59.99811 * 18 16 14
20 20 H 1.48500 * 109.47356 * 180.02562 * 18 16 14
21 21 H 1.48507 * 109.47158 * 300.00440 * 18 16 14
22 22 C 1.50699 * 109.47353 * 185.00177 * 11 10 9
23 23 C 1.38237 * 120.00226 * 79.72424 * 22 11 10
24 24 C 1.38234 * 120.00123 * 179.78744 * 23 22 11
25 25 C 1.38235 * 119.99953 * 0.44272 * 24 23 22
26 26 C 1.38243 * 119.99844 * 359.81133 * 25 24 23
27 27 C 1.38233 * 119.99865 * 359.97349 * 26 25 24
28 28 C 1.37937 * 119.92606 * 180.28266 * 2 1 3
29 29 H 1.09001 * 109.46953 * 269.71897 * 1 2 3
30 30 H 1.09000 * 109.47318 * 29.71494 * 1 2 3
31 31 H 1.09000 * 109.47161 * 149.72125 * 1 2 3
32 32 H 1.08007 * 119.85448 * 0.02562 * 3 2 1
33 33 H 1.08000 * 119.92587 * 180.25865 * 4 3 2
34 34 H 1.07998 * 120.07133 * 179.72192 * 5 4 3
35 35 H 0.96991 * 120.00377 * 0.02562 * 9 7 6
36 36 H 1.09006 * 109.47717 * 300.00232 * 10 9 7
37 37 H 1.08998 * 109.47624 * 60.00227 * 10 9 7
38 38 H 0.97002 * 119.99663 * 335.00045 * 13 11 10
39 39 H 0.97009 * 119.99685 * 179.97438 * 17 16 14
40 40 H 1.08004 * 120.00034 * 359.97438 * 23 22 11
41 41 H 1.07996 * 120.00242 * 180.27068 * 24 23 22
42 42 H 1.07997 * 120.00424 * 179.83375 * 25 24 23
43 43 H 1.08000 * 120.00113 * 180.02562 * 26 25 24
44 44 H 1.07998 * 119.99768 * 179.97438 * 27 26 25
45 45 H 1.07997 * 120.07445 * 359.95257 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1974 1.1992 0.0000
4 6 3.5808 1.2081 0.0048
5 6 4.2813 0.0193 -0.0010
6 6 3.5912 -1.1936 -0.0064
7 6 4.3353 -2.4712 -0.0131
8 8 3.7315 -3.5261 -0.0183
9 7 5.6830 -2.4660 -0.0136
10 6 6.4203 -3.7319 -0.0208
11 6 7.9235 -3.4467 -0.0191
12 1 8.1994 -2.9576 0.9150
13 7 8.2556 -2.5708 -1.1456
14 6 9.3681 -1.7743 -1.0888
15 1 10.0009 -1.7921 -0.2139
16 6 9.6824 -0.9440 -2.1560
17 7 8.9108 -0.9220 -3.2221
18 14 11.2003 0.1419 -2.0789
19 1 12.4082 -0.7066 -1.9166
20 1 11.3114 0.9272 -3.3344
21 1 11.0877 1.0688 -0.9241
22 6 8.6809 -4.7428 -0.1505
23 6 8.8247 -5.3369 -1.3904
24 6 9.5232 -6.5235 -1.5115
25 6 10.0703 -7.1210 -0.3913
26 6 9.9220 -6.5296 0.8494
27 6 9.2272 -5.3406 0.9698
28 6 2.1952 -1.1954 -0.0059
29 1 -0.3633 -0.0050 1.0277
30 1 -0.3634 0.8925 -0.5094
31 1 -0.3633 -0.8875 -0.5182
32 1 1.6538 2.1325 0.0004
33 1 4.1136 2.1475 0.0090
34 1 5.3612 0.0276 -0.0017
35 1 6.1648 -1.6242 -0.0091
36 1 6.1595 -4.3095 0.8660
37 1 6.1589 -4.2996 -0.9139
38 1 7.6873 -2.5550 -1.9316
39 1 9.1303 -0.3415 -3.9677
40 1 8.3938 -4.8723 -2.2650
41 1 9.6393 -6.9854 -2.4808
42 1 10.6137 -8.0495 -0.4854
43 1 10.3497 -6.9961 1.7246
44 1 9.1111 -4.8789 1.9392
45 1 1.6552 -2.1307 -0.0097
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691771870.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:23:49
Heat of formation + Delta-G solvation = 19.421970 kcal
Electronic energy + Delta-G solvation = -26293.144677 eV
Core-core repulsion = 22661.182635 eV
Total energy + Delta-G solvation = -3631.962042 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.05420 -38.96748 -38.21969 -35.89396 -33.76434 -32.86310 -31.93900 -31.04691
-30.41891 -29.57825 -27.73135 -26.77684 -24.32357 -23.34959 -22.44800 -21.90358
-21.79630 -20.06672 -19.74288 -17.70120 -17.19454 -16.46980 -16.01593 -15.81922
-15.26348 -14.93238 -14.69098 -14.54398 -14.38134 -14.16403 -13.82867 -13.62416
-13.35807 -13.19179 -12.91314 -12.83873 -12.71956 -12.35764 -12.34714 -12.08200
-11.84483 -11.60245 -11.14660 -11.06216 -10.96508 -10.84760 -10.72338 -10.47285
-10.19585 -9.82870 -9.68887 -9.09716 -8.98754 -8.76844 -8.60715 -8.41172
-8.19715 -7.15905 -5.88659 -3.20410 0.92569 1.35714 1.85664 1.92251
3.05052 3.36458 3.42616 3.42942 3.50035 3.95311 4.30046 4.48589
4.72686 4.79638 4.88446 5.13631 5.22303 5.23512 5.33327 5.34282
5.41364 5.44048 5.46085 5.55290 5.56919 5.61897 5.68002 5.76888
5.85769 5.92080 6.02531 6.03260 6.08737 6.25102 6.37072 6.39069
6.42887 6.48129 6.48742 6.62306 6.77337 6.90245 6.93306 7.01620
7.27607 7.52298 7.61204 7.88727 8.27191 8.51404 9.40269 9.89947
10.26837 11.32449
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.009948 B = 0.003765 C = 0.002888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2814.046726 B = 7435.408924 C = 9691.734654
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.102 4.102
3 C -0.100 4.100
4 C -0.123 4.123
5 C -0.085 4.085
6 C -0.125 4.125
7 C 0.554 3.446
8 O -0.551 6.551
9 N -0.707 5.707
10 C 0.121 3.879
11 C 0.197 3.803
12 H 0.066 0.934
13 N -0.714 5.714
14 C -0.246 4.246
15 H 0.071 0.929
16 C -0.004 4.004
17 N -0.927 5.927
18 Si 0.905 3.095
19 H -0.286 1.286
20 H -0.291 1.291
21 H -0.285 1.285
22 C -0.081 4.081
23 C -0.083 4.083
24 C -0.127 4.127
25 C -0.134 4.134
26 C -0.130 4.130
27 C -0.120 4.120
28 C -0.064 4.064
29 H 0.069 0.931
30 H 0.066 0.934
31 H 0.067 0.933
32 H 0.123 0.877
33 H 0.128 0.872
34 H 0.133 0.867
35 H 0.410 0.590
36 H 0.068 0.932
37 H 0.067 0.933
38 H 0.387 0.613
39 H 0.257 0.743
40 H 0.123 0.877
41 H 0.113 0.887
42 H 0.111 0.889
43 H 0.112 0.888
44 H 0.115 0.885
45 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.149 -1.057 7.774 12.828
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.102 4.102
3 C -0.118 4.118
4 C -0.141 4.141
5 C -0.103 4.103
6 C -0.128 4.128
7 C 0.341 3.659
8 O -0.431 6.431
9 N -0.359 5.359
10 C -0.004 4.004
11 C 0.086 3.914
12 H 0.084 0.916
13 N -0.355 5.355
14 C -0.377 4.377
15 H 0.089 0.911
16 C -0.201 4.201
17 N -0.575 5.575
18 Si 0.736 3.264
19 H -0.212 1.212
20 H -0.217 1.217
21 H -0.212 1.212
22 C -0.085 4.085
23 C -0.102 4.102
24 C -0.146 4.146
25 C -0.153 4.153
26 C -0.148 4.148
27 C -0.139 4.139
28 C -0.083 4.083
29 H 0.088 0.912
30 H 0.085 0.915
31 H 0.086 0.914
32 H 0.141 0.859
33 H 0.146 0.854
34 H 0.150 0.850
35 H 0.248 0.752
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.222 0.778
39 H 0.067 0.933
40 H 0.141 0.859
41 H 0.131 0.869
42 H 0.129 0.871
43 H 0.130 0.870
44 H 0.133 0.867
45 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -10.397 -1.679 7.777 13.092
hybrid contribution 1.301 0.995 -0.438 1.695
sum -9.096 -0.683 7.339 11.708
Atomic orbital electron populations
1.20774 0.90908 1.02864 1.02318 1.19864 0.96271 0.92882 1.01176
1.21211 0.94338 0.97498 0.98774 1.21114 0.94150 0.98217 1.00602
1.21474 1.00503 0.91730 0.96634 1.19998 0.94277 0.93160 1.05391
1.18253 0.82330 0.88655 0.76617 1.90728 1.68779 1.32542 1.51018
1.45889 1.05626 1.10871 1.73468 1.21609 0.91398 0.85327 1.02042
1.19490 0.89681 0.88290 0.93891 0.91647 1.42461 1.30188 1.46032
1.16818 1.19142 1.01713 1.15507 1.01298 0.91132 1.24716 0.98774
1.00260 0.96333 1.69651 1.38998 1.42104 1.06705 0.86311 0.83015
0.80347 0.76733 1.21243 1.21700 1.21184 1.20962 0.98037 0.96494
0.92979 1.21007 0.97505 0.93912 0.97748 1.21105 0.98923 0.96432
0.98099 1.20984 1.01179 0.99984 0.93106 1.20984 1.00294 0.96415
0.97115 1.21009 0.98959 0.95783 0.98161 1.21123 0.92704 0.98205
0.96240 0.91203 0.91531 0.91386 0.85879 0.85357 0.84954 0.75180
0.91377 0.91440 0.77822 0.93306 0.85920 0.86851 0.87084 0.86989
0.86745 0.84886
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16
2 C -0.10 -1.16 5.87 -104.68 -0.61 -1.77 16
3 C -0.10 -1.08 9.69 -39.49 -0.38 -1.46 16
4 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16
5 C -0.08 -1.16 9.54 -39.19 -0.37 -1.54 16
6 C -0.13 -1.90 5.87 -104.97 -0.62 -2.51 16
7 C 0.55 9.65 7.77 -12.33 -0.10 9.56 16
8 O -0.55 -11.01 16.35 5.32 0.09 -10.92 16
9 N -0.71 -11.87 5.34 -61.25 -0.33 -12.20 16
10 C 0.12 2.06 5.21 -4.04 -0.02 2.04 16
11 C 0.20 3.62 2.64 -69.08 -0.18 3.43 16
12 H 0.07 1.18 7.94 -51.93 -0.41 0.77 16
13 N -0.71 -15.90 3.81 -54.55 -0.21 -16.11 16
14 C -0.25 -6.22 9.92 -15.06 -0.15 -6.37 16
15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16
16 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16
17 N -0.93 -26.10 13.06 55.49 0.72 -25.38 16
18 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16
19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16
21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
22 C -0.08 -1.46 4.92 -104.62 -0.51 -1.97 16
23 C -0.08 -1.54 9.32 -39.58 -0.37 -1.91 16
24 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16
25 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16
26 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16
27 C -0.12 -1.93 9.67 -39.59 -0.38 -2.31 16
28 C -0.06 -0.87 9.24 -39.19 -0.36 -1.24 16
29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16
31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16
32 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16
33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16
34 H 0.13 1.80 6.41 -52.49 -0.34 1.46 16
35 H 0.41 6.82 6.17 -40.82 -0.25 6.57 16
36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
38 H 0.39 9.37 7.80 -40.82 -0.32 9.05 16
39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
40 H 0.12 2.42 7.73 -52.48 -0.41 2.01 16
41 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
42 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16
43 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16
44 H 0.11 1.61 8.04 -52.49 -0.42 1.18 16
45 H 0.13 1.81 7.65 -52.49 -0.40 1.40 16
LS Contribution 383.55 15.07 5.78 5.78
Total: -1.00 -30.02 383.55 -10.67 -40.69
By element:
Atomic # 1 Polarization: 23.96 SS G_CDS: -6.32 Total: 17.65 kcal
Atomic # 6 Polarization: -10.44 SS G_CDS: -5.39 Total: -15.83 kcal
Atomic # 7 Polarization: -53.87 SS G_CDS: 0.19 Total: -53.68 kcal
Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -30.02 -10.67 -40.69 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691771870.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.114 kcal
(2) G-P(sol) polarization free energy of solvation -30.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds