Wall clock time and date at job start Tue Mar 31 2020 14:23:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38375 * 119.92694 * 2 1
4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1
5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2
6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3
7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4
8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5
9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5
10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6
11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47344 * 64.99466 * 11 10 9
13 13 N 1.46509 * 109.46818 * 304.99783 * 11 10 9
14 14 C 1.36937 * 119.99708 * 154.99760 * 13 11 10
15 15 H 1.07991 * 120.00633 * 0.02562 * 14 13 11
16 16 C 1.38816 * 119.99625 * 180.02562 * 14 13 11
17 17 N 1.31621 * 119.99667 * 0.02562 * 16 14 13
18 18 Si 1.86795 * 120.00109 * 180.02562 * 16 14 13
19 19 H 1.48503 * 109.47180 * 59.99811 * 18 16 14
20 20 H 1.48500 * 109.47356 * 180.02562 * 18 16 14
21 21 H 1.48507 * 109.47158 * 300.00440 * 18 16 14
22 22 C 1.50699 * 109.47353 * 185.00177 * 11 10 9
23 23 C 1.38237 * 120.00226 * 79.72424 * 22 11 10
24 24 C 1.38234 * 120.00123 * 179.78744 * 23 22 11
25 25 C 1.38235 * 119.99953 * 0.44272 * 24 23 22
26 26 C 1.38243 * 119.99844 * 359.81133 * 25 24 23
27 27 C 1.38233 * 119.99865 * 359.97349 * 26 25 24
28 28 C 1.37937 * 119.92606 * 180.28266 * 2 1 3
29 29 H 1.09001 * 109.46953 * 269.71897 * 1 2 3
30 30 H 1.09000 * 109.47318 * 29.71494 * 1 2 3
31 31 H 1.09000 * 109.47161 * 149.72125 * 1 2 3
32 32 H 1.08007 * 119.85448 * 0.02562 * 3 2 1
33 33 H 1.08000 * 119.92587 * 180.25865 * 4 3 2
34 34 H 1.07998 * 120.07133 * 179.72192 * 5 4 3
35 35 H 0.96991 * 120.00377 * 0.02562 * 9 7 6
36 36 H 1.09006 * 109.47717 * 300.00232 * 10 9 7
37 37 H 1.08998 * 109.47624 * 60.00227 * 10 9 7
38 38 H 0.97002 * 119.99663 * 335.00045 * 13 11 10
39 39 H 0.97009 * 119.99685 * 179.97438 * 17 16 14
40 40 H 1.08004 * 120.00034 * 359.97438 * 23 22 11
41 41 H 1.07996 * 120.00242 * 180.27068 * 24 23 22
42 42 H 1.07997 * 120.00424 * 179.83375 * 25 24 23
43 43 H 1.08000 * 120.00113 * 180.02562 * 26 25 24
44 44 H 1.07998 * 119.99768 * 179.97438 * 27 26 25
45 45 H 1.07997 * 120.07445 * 359.95257 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1974 1.1992 0.0000
4 6 3.5808 1.2081 0.0048
5 6 4.2813 0.0193 -0.0010
6 6 3.5912 -1.1936 -0.0064
7 6 4.3353 -2.4712 -0.0131
8 8 3.7315 -3.5261 -0.0183
9 7 5.6830 -2.4660 -0.0136
10 6 6.4203 -3.7319 -0.0208
11 6 7.9235 -3.4467 -0.0191
12 1 8.1994 -2.9576 0.9150
13 7 8.2556 -2.5708 -1.1456
14 6 9.3681 -1.7743 -1.0888
15 1 10.0009 -1.7921 -0.2139
16 6 9.6824 -0.9440 -2.1560
17 7 8.9108 -0.9220 -3.2221
18 14 11.2003 0.1419 -2.0789
19 1 12.4082 -0.7066 -1.9166
20 1 11.3114 0.9272 -3.3344
21 1 11.0877 1.0688 -0.9241
22 6 8.6809 -4.7428 -0.1505
23 6 8.8247 -5.3369 -1.3904
24 6 9.5232 -6.5235 -1.5115
25 6 10.0703 -7.1210 -0.3913
26 6 9.9220 -6.5296 0.8494
27 6 9.2272 -5.3406 0.9698
28 6 2.1952 -1.1954 -0.0059
29 1 -0.3633 -0.0050 1.0277
30 1 -0.3634 0.8925 -0.5094
31 1 -0.3633 -0.8875 -0.5182
32 1 1.6538 2.1325 0.0004
33 1 4.1136 2.1475 0.0090
34 1 5.3612 0.0276 -0.0017
35 1 6.1648 -1.6242 -0.0091
36 1 6.1595 -4.3095 0.8660
37 1 6.1589 -4.2996 -0.9139
38 1 7.6873 -2.5550 -1.9316
39 1 9.1303 -0.3415 -3.9677
40 1 8.3938 -4.8723 -2.2650
41 1 9.6393 -6.9854 -2.4808
42 1 10.6137 -8.0495 -0.4854
43 1 10.3497 -6.9961 1.7246
44 1 9.1111 -4.8789 1.9392
45 1 1.6552 -2.1307 -0.0097
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691771870.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:23:48
Heat of formation + Delta-G solvation = 3.754479 kcal
Electronic energy + Delta-G solvation = -26293.824070 eV
Core-core repulsion = 22661.182635 eV
Total energy + Delta-G solvation = -3632.641435 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.158 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.29779 -40.24558 -39.39697 -37.41512 -35.33974 -34.08810 -33.35349 -32.09295
-31.71002 -31.19427 -29.10713 -27.68889 -25.90507 -24.89471 -23.72804 -23.18317
-22.78068 -21.48255 -21.00834 -19.36583 -18.61207 -17.79383 -17.23172 -16.99957
-16.79684 -16.29811 -15.99370 -15.77018 -15.70530 -15.58368 -15.13214 -14.83053
-14.63290 -14.45873 -14.20923 -14.07694 -13.95789 -13.78053 -13.42648 -13.04673
-12.95027 -12.83317 -12.75692 -12.56457 -12.44770 -12.19112 -12.04773 -11.98122
-11.84300 -11.63935 -11.13070 -10.94528 -10.22702 -9.88548 -9.68853 -9.66076
-9.53802 -9.04522 -7.91946 -5.22101 -0.14204 0.38236 0.57759 0.64050
1.49006 1.50751 1.56150 1.82611 2.16929 2.56330 2.86610 3.01142
3.41669 3.66864 3.77946 3.84401 3.96319 4.02229 4.14848 4.17717
4.21093 4.33026 4.34302 4.37754 4.40209 4.41700 4.64598 4.72115
4.78255 4.82748 4.85766 4.89389 4.99625 5.01090 5.20717 5.26657
5.29746 5.33073 5.41151 5.44479 5.54586 5.56769 5.68594 5.72590
5.93095 5.96472 6.24636 6.27939 6.50020 7.12644 7.35459 8.02164
8.29598 9.29783
Molecular weight = 324.16amu
Principal moments of inertia in cm(-1)
A = 0.009948 B = 0.003765 C = 0.002888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2814.046726 B = 7435.408924 C = 9691.734654
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.100 4.100
3 C -0.091 4.091
4 C -0.124 4.124
5 C -0.097 4.097
6 C -0.149 4.149
7 C 0.551 3.449
8 O -0.585 6.585
9 N -0.704 5.704
10 C 0.131 3.869
11 C 0.204 3.796
12 H 0.072 0.928
13 N -0.718 5.718
14 C -0.234 4.234
15 H 0.074 0.926
16 C -0.060 4.060
17 N -0.962 5.962
18 Si 0.963 3.037
19 H -0.287 1.287
20 H -0.300 1.300
21 H -0.274 1.274
22 C -0.101 4.101
23 C -0.111 4.111
24 C -0.137 4.137
25 C -0.131 4.131
26 C -0.126 4.126
27 C -0.126 4.126
28 C -0.079 4.079
29 H 0.083 0.917
30 H 0.086 0.914
31 H 0.067 0.933
32 H 0.160 0.840
33 H 0.151 0.849
34 H 0.126 0.874
35 H 0.411 0.589
36 H 0.080 0.920
37 H 0.049 0.951
38 H 0.374 0.626
39 H 0.249 0.751
40 H 0.095 0.905
41 H 0.128 0.872
42 H 0.145 0.855
43 H 0.148 0.852
44 H 0.135 0.865
45 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.089 -0.588 9.611 13.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.100 4.100
3 C -0.109 4.109
4 C -0.142 4.142
5 C -0.116 4.116
6 C -0.152 4.152
7 C 0.340 3.660
8 O -0.467 6.467
9 N -0.355 5.355
10 C 0.006 3.994
11 C 0.095 3.905
12 H 0.090 0.910
13 N -0.358 5.358
14 C -0.365 4.365
15 H 0.092 0.908
16 C -0.253 4.253
17 N -0.612 5.612
18 Si 0.793 3.207
19 H -0.214 1.214
20 H -0.226 1.226
21 H -0.200 1.200
22 C -0.104 4.104
23 C -0.129 4.129
24 C -0.155 4.155
25 C -0.148 4.148
26 C -0.144 4.144
27 C -0.145 4.145
28 C -0.098 4.098
29 H 0.102 0.898
30 H 0.105 0.895
31 H 0.086 0.914
32 H 0.177 0.823
33 H 0.169 0.831
34 H 0.143 0.857
35 H 0.249 0.751
36 H 0.098 0.902
37 H 0.068 0.932
38 H 0.207 0.793
39 H 0.058 0.942
40 H 0.113 0.887
41 H 0.146 0.854
42 H 0.162 0.838
43 H 0.165 0.835
44 H 0.152 0.848
45 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -10.325 -1.224 9.665 14.195
hybrid contribution 1.236 0.771 -0.941 1.734
sum -9.090 -0.453 8.724 12.607
Atomic orbital electron populations
1.20850 0.88465 1.03921 1.03500 1.20244 0.98035 0.92133 0.99567
1.21647 0.94018 0.98667 0.96545 1.21436 0.94969 0.98178 0.99629
1.21505 1.00356 0.92182 0.97588 1.19914 0.94909 0.92373 1.07988
1.18706 0.82307 0.89320 0.75659 1.90690 1.69295 1.33910 1.52797
1.45876 1.05682 1.10722 1.73221 1.21477 0.90755 0.85476 1.01661
1.19539 0.90294 0.88196 0.92472 0.91031 1.42481 1.29324 1.46616
1.17385 1.19427 1.01769 1.14545 1.00793 0.90778 1.25355 1.01360
1.02198 0.96434 1.69803 1.40737 1.43341 1.07354 0.85386 0.80065
0.78858 0.76436 1.21361 1.22644 1.20037 1.20845 0.99205 0.96601
0.93783 1.20950 0.99323 0.95466 0.97175 1.21343 0.98627 0.95755
0.99751 1.21398 1.00184 1.00807 0.92454 1.21420 0.98983 0.95565
0.98387 1.21282 0.98583 0.96453 0.98186 1.21228 0.92208 0.99182
0.97183 0.89823 0.89481 0.91392 0.82270 0.83103 0.85659 0.75079
0.90206 0.93231 0.79300 0.94172 0.88705 0.85431 0.83753 0.83471
0.84760 0.85647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16
2 C -0.10 -2.11 5.87 -19.90 -0.12 -2.23 16
3 C -0.09 -1.71 9.69 22.33 0.22 -1.50 16
4 C -0.12 -2.74 10.03 22.23 0.22 -2.51 16
5 C -0.10 -2.72 9.54 22.53 0.21 -2.50 16
6 C -0.15 -4.68 5.87 -20.09 -0.12 -4.80 16
7 C 0.55 20.28 7.77 86.79 0.67 20.96 16
8 O -0.58 -24.65 16.35 -3.87 -0.06 -24.71 16
9 N -0.70 -24.94 5.34 -465.97 -2.49 -27.43 16
10 C 0.13 4.68 5.21 86.38 0.45 5.13 16
11 C 0.20 7.67 2.64 44.24 0.12 7.79 16
12 H 0.07 2.59 7.94 -2.39 -0.02 2.57 16
13 N -0.72 -33.17 3.81 -326.49 -1.24 -34.42 16
14 C -0.23 -12.00 9.92 84.03 0.83 -11.16 16
15 H 0.07 3.70 7.83 -2.92 -0.02 3.68 16
16 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16
17 N -0.96 -55.95 13.06 21.65 0.28 -55.67 16
18 Si 0.96 44.33 29.55 68.60 2.03 46.36 16
19 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16
21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
22 C -0.10 -3.65 4.92 -19.87 -0.10 -3.75 16
23 C -0.11 -4.20 9.32 22.27 0.21 -3.99 16
24 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16
25 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16
26 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16
27 C -0.13 -3.83 9.67 22.27 0.22 -3.61 16
28 C -0.08 -2.20 9.24 22.53 0.21 -1.99 16
29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
30 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16
31 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16
32 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16
33 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16
34 H 0.13 3.56 6.41 -2.91 -0.02 3.55 16
35 H 0.41 14.42 6.17 -92.71 -0.57 13.85 16
36 H 0.08 2.65 8.14 -2.38 -0.02 2.64 16
37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
38 H 0.37 19.15 7.80 -92.71 -0.72 18.43 16
39 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16
40 H 0.09 4.04 7.73 -2.91 -0.02 4.02 16
41 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16
42 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16
43 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16
44 H 0.13 3.44 8.04 -2.91 -0.02 3.42 16
45 H 0.13 3.57 7.65 -2.91 -0.02 3.55 16
Total: -1.00 -66.83 383.55 3.11 -63.72
By element:
Atomic # 1 Polarization: 50.75 SS G_CDS: -0.29 Total: 50.47 kcal
Atomic # 6 Polarization: -23.19 SS G_CDS: 4.88 Total: -18.32 kcal
Atomic # 7 Polarization: -114.07 SS G_CDS: -3.45 Total: -117.52 kcal
Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal
Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal
Total: -66.83 3.11 -63.72 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691771870.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.476 kcal
(2) G-P(sol) polarization free energy of solvation -66.828 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.649 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.754 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds