Wall clock time and date at job start Tue Mar 31 2020 14:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47246 * 2 1 4 4 C 1.53006 * 109.46967 * 240.00108 * 2 1 3 5 5 N 1.46504 * 109.46904 * 59.99926 * 4 2 1 6 6 C 1.34776 * 119.99696 * 179.97438 * 5 4 2 7 7 O 1.21609 * 119.99856 * 0.02562 * 6 5 4 8 8 C 1.47429 * 120.00170 * 179.97438 * 6 5 4 9 9 C 1.39226 * 120.28018 * 355.35589 * 8 6 5 10 10 C 1.38223 * 120.09476 * 179.97438 * 9 8 6 11 11 C 1.38822 * 120.67177 * 0.02562 * 10 9 8 12 12 C 1.37602 * 120.57435 * 359.97438 * 11 10 9 13 13 C 1.40701 * 119.87502 * 359.74297 * 12 11 10 14 14 C 1.40897 * 120.32648 * 180.25672 * 13 12 11 15 15 H 1.07999 * 120.00019 * 215.81949 * 14 13 12 16 16 C 1.40274 * 119.99855 * 35.80870 * 14 13 12 17 17 N 1.30630 * 120.00361 * 8.99015 * 16 14 13 18 18 Si 1.86806 * 119.99888 * 188.98570 * 16 14 13 19 19 H 1.48498 * 109.47137 * 60.00472 * 18 16 14 20 20 H 1.48504 * 109.46939 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46826 * 300.00120 * 18 16 14 22 22 C 1.50702 * 109.47425 * 120.00312 * 2 1 3 23 23 C 1.38231 * 119.61292 * 285.02073 * 22 2 1 24 24 C 1.38626 * 119.15519 * 179.70295 * 23 22 2 25 25 C 1.38669 * 118.42382 * 0.51337 * 24 23 22 26 26 C 1.38183 * 119.16422 * 359.50905 * 25 24 23 27 27 N 1.31849 * 119.62149 * 104.99948 * 22 2 1 28 28 H 1.08997 * 109.47120 * 299.99737 * 1 2 3 29 29 H 1.08999 * 109.47002 * 60.00060 * 1 2 3 30 30 H 1.08998 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47720 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47494 * 300.00300 * 3 2 1 33 33 H 1.09007 * 109.47033 * 60.00055 * 3 2 1 34 34 H 1.09006 * 109.46783 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.46947 * 299.99646 * 4 2 1 36 36 H 0.96998 * 119.99961 * 359.97438 * 5 4 2 37 37 H 1.08002 * 119.95605 * 359.95467 * 9 8 6 38 38 H 1.07994 * 119.66205 * 179.97438 * 10 9 8 39 39 H 1.08005 * 119.71363 * 179.97438 * 11 10 9 40 40 H 1.07999 * 120.06039 * 179.97438 * 12 11 10 41 41 H 0.96995 * 120.00407 * 179.97438 * 17 16 14 42 42 H 1.07999 * 120.42437 * 359.95200 * 23 22 2 43 43 H 1.08002 * 120.78770 * 180.27588 * 24 23 22 44 44 H 1.08006 * 120.42203 * 179.78011 * 25 24 23 45 45 H 1.07999 * 119.62004 * 180.25304 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5516 -0.0306 -2.4455 6 6 1.8776 -0.4907 -3.6696 7 8 2.5767 -1.4795 -3.7811 8 6 1.3857 0.2039 -4.8733 9 6 0.5064 1.2769 -4.7547 10 6 0.0481 1.9257 -5.8858 11 6 0.4549 1.5190 -7.1493 12 6 1.3230 0.4620 -7.2986 13 6 1.8090 -0.2116 -6.1629 14 6 2.7025 -1.2918 -6.3044 15 1 2.6442 -2.1329 -5.6295 16 6 3.6678 -1.2747 -7.3222 17 7 3.8567 -0.1900 -8.0252 18 14 4.6832 -2.8032 -7.6721 19 1 3.7815 -3.9203 -8.0516 20 1 5.6257 -2.5269 -8.7859 21 1 5.4499 -3.1769 -6.4565 22 6 2.0324 -0.7105 1.2304 23 6 1.9665 -0.0793 2.4584 24 6 2.4256 -0.7440 3.5850 25 6 2.9461 -2.0201 3.4320 26 6 2.9801 -2.5870 2.1723 27 7 2.5293 -1.9270 1.1232 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 0.9936 0.7578 -2.3564 37 1 0.1818 1.6025 -3.7774 38 1 -0.6341 2.7569 -5.7857 39 1 0.0867 2.0369 -8.0227 40 1 1.6337 0.1523 -8.2855 41 1 4.5243 -0.1781 -8.7286 42 1 1.5587 0.9175 2.5398 43 1 2.3825 -0.2774 4.5581 44 1 3.3162 -2.5660 4.2874 45 1 3.3802 -3.5821 2.0454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601613708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:23 Heat of formation + Delta-G solvation = 13.444679 kcal Electronic energy + Delta-G solvation = -26735.188682 eV Core-core repulsion = 23102.967446 eV Total energy + Delta-G solvation = -3632.221236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.68471 -38.92220 -37.25271 -36.21555 -33.74455 -32.80095 -32.65113 -30.34100 -29.85615 -29.40113 -27.39122 -26.42640 -25.21540 -23.76671 -23.36154 -21.94895 -20.81232 -19.52344 -19.39141 -17.50101 -17.03819 -16.58783 -16.00946 -15.42841 -15.18473 -14.92506 -14.84963 -14.24499 -14.07323 -14.01769 -13.85434 -13.32875 -13.25505 -13.09423 -12.96132 -12.64871 -12.41960 -12.21298 -12.01180 -11.76963 -11.49305 -11.27222 -11.13458 -11.06576 -10.87499 -10.79960 -10.61538 -10.44776 -10.05536 -10.04740 -9.63385 -9.45891 -9.19651 -9.12644 -8.28168 -8.20568 -7.53603 -7.27887 -6.73976 -4.33257 0.93775 1.12213 2.42677 2.87163 3.13793 3.20684 3.30098 3.63760 3.95054 4.03815 4.09908 4.26723 4.56209 4.66010 4.75878 4.81701 4.90560 4.92081 5.00548 5.00794 5.41369 5.49396 5.55277 5.67105 5.69971 5.70508 5.79638 5.94175 5.97319 6.02490 6.07947 6.10234 6.16021 6.31021 6.32737 6.45226 6.53446 6.70382 6.99691 7.15394 7.23690 7.33836 7.51213 7.66745 7.90037 7.93049 8.05294 8.23493 8.48489 8.74631 8.89427 8.97202 9.53877 10.22251 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003302 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.209832 B = 8477.046584 C =10024.624841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.142 4.142 4 C 0.150 3.850 5 N -0.749 5.749 6 C 0.564 3.436 7 O -0.537 6.537 8 C -0.258 4.258 9 C -0.058 4.058 10 C -0.245 4.245 11 C -0.097 4.097 12 C -0.147 4.147 13 C 0.147 3.853 14 C -0.423 4.423 15 H 0.110 0.890 16 C 0.069 3.931 17 N -0.796 5.796 18 Si 0.916 3.084 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.150 3.850 23 C -0.169 4.169 24 C -0.076 4.076 25 C -0.183 4.183 26 C 0.103 3.897 27 N -0.474 5.474 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.388 0.612 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.281 0.719 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 1.837 18.938 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 C -0.199 4.199 4 C 0.026 3.974 5 N -0.405 5.405 6 C 0.358 3.642 7 O -0.416 6.416 8 C -0.263 4.263 9 C -0.077 4.077 10 C -0.265 4.265 11 C -0.116 4.116 12 C -0.166 4.166 13 C 0.143 3.857 14 C -0.451 4.451 15 H 0.128 0.872 16 C -0.149 4.149 17 N -0.421 5.421 18 Si 0.740 3.260 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.186 1.186 22 C 0.012 3.988 23 C -0.188 4.188 24 C -0.102 4.102 25 C -0.203 4.203 26 C -0.054 4.054 27 N -0.182 5.182 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.224 0.776 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.948 0.789 17.847 18.106 hybrid contribution 0.304 0.353 0.837 0.958 sum -2.643 1.142 18.684 18.905 Atomic orbital electron populations 1.21871 0.92632 1.02737 1.02222 1.19751 0.96319 0.95132 0.91757 1.21955 1.01799 0.93839 1.02351 1.20938 0.98819 0.95878 0.81772 1.46088 1.56018 1.32801 1.05567 1.18371 0.79567 0.83869 0.82441 1.90657 1.38225 1.26564 1.86110 1.19495 1.11030 1.03047 0.92722 1.20630 0.96141 0.94691 0.96229 1.20270 1.08636 1.04641 0.92932 1.20789 0.98001 0.97054 0.95733 1.21331 0.98279 0.98106 0.98867 1.17481 0.88910 0.90312 0.89011 1.20280 1.10456 1.04406 1.09944 0.87196 1.26135 0.97770 0.97139 0.93808 1.69711 1.28501 1.27330 1.16605 0.86225 0.79431 0.81723 0.78574 1.18749 1.20565 1.18639 1.21064 0.93487 0.90403 0.93885 1.21916 1.02284 1.01582 0.93057 1.21551 0.95324 0.94471 0.98854 1.22133 1.02253 0.96692 0.99204 1.22820 0.94998 0.99547 0.87996 1.67566 1.09223 1.07959 1.33446 0.92401 0.91309 0.92051 0.92051 0.91252 0.92192 0.92098 0.91057 0.77616 0.89404 0.89165 0.89147 0.86719 0.90769 0.84759 0.85007 0.84991 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.23 37.16 0.31 -1.17 16 2 C -0.03 -0.35 0.63 -155.66 -0.10 -0.45 16 3 C -0.14 -1.51 7.91 37.16 0.29 -1.22 16 4 C 0.15 2.51 3.90 -4.04 -0.02 2.49 16 5 N -0.75 -13.66 4.91 -61.37 -0.30 -13.96 16 6 C 0.56 13.42 7.72 -12.52 -0.10 13.33 16 7 O -0.54 -14.66 13.53 5.27 0.07 -14.59 16 8 C -0.26 -6.40 5.92 -104.37 -0.62 -7.01 16 9 C -0.06 -1.24 9.52 -39.22 -0.37 -1.62 16 10 C -0.25 -5.24 10.03 -39.37 -0.39 -5.63 16 11 C -0.10 -2.21 10.01 -39.60 -0.40 -2.60 16 12 C -0.15 -3.77 8.62 -38.88 -0.34 -4.11 16 13 C 0.15 4.01 5.48 -106.54 -0.58 3.43 16 14 C -0.42 -11.88 7.78 -37.81 -0.29 -12.18 16 15 H 0.11 3.22 5.73 -52.49 -0.30 2.92 16 16 C 0.07 1.83 5.25 -17.30 -0.09 1.74 16 17 N -0.80 -21.05 11.25 55.56 0.63 -20.43 16 18 Si 0.92 20.19 29.57 -169.99 -5.03 15.17 16 19 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 22 C 0.15 1.83 5.56 -82.59 -0.46 1.37 16 23 C -0.17 -1.61 9.08 -39.44 -0.36 -1.97 16 24 C -0.08 -0.63 10.18 -39.28 -0.40 -1.03 16 25 C -0.18 -1.56 10.11 -39.44 -0.40 -1.95 16 26 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 27 N -0.47 -6.47 9.03 -9.47 -0.09 -6.56 16 28 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.73 6.86 -51.93 -0.36 0.38 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.75 6.86 -51.92 -0.36 0.39 16 33 H 0.06 0.49 6.70 -51.93 -0.35 0.14 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.32 7.85 -51.93 -0.41 0.91 16 36 H 0.39 6.05 4.22 -40.82 -0.17 5.88 16 37 H 0.09 1.54 6.42 -52.49 -0.34 1.20 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 40 H 0.11 3.01 6.72 -52.49 -0.35 2.66 16 41 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 42 H 0.13 1.00 6.73 -52.49 -0.35 0.64 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 45 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -32.05 365.91 -9.63 -41.68 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.92 Total: 10.85 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -4.51 Total: -17.67 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.24 Total: -40.95 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.07 Total: -14.59 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.05 -9.63 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601613708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.125 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds