Wall clock time and date at job start Tue Mar 31 2020 13:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 H 1.09003 * 109.47312 * 305.00300 * 3 2 1 5 5 C 1.52996 * 109.46956 * 184.99859 * 3 2 1 6 6 O 1.42894 * 109.47503 * 304.99862 * 5 3 2 7 7 C 1.42893 * 114.00329 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.46801 * 64.99703 * 3 2 1 9 9 C 1.34770 * 120.00256 * 275.00199 * 8 3 2 10 10 O 1.21360 * 120.00477 * 359.97438 * 9 8 3 11 11 C 1.49348 * 120.00144 * 180.02562 * 9 8 3 12 12 O 1.21382 * 119.99788 * 359.97438 * 11 9 8 13 13 N 1.34770 * 120.00144 * 179.97438 * 11 9 8 14 14 C 1.39937 * 119.99823 * 179.97438 * 13 11 9 15 15 C 1.40453 * 125.98116 * 359.97438 * 14 13 11 16 16 C 1.35215 * 107.86384 * 179.71599 * 15 14 13 17 17 N 1.34979 * 107.87970 * 0.42460 * 16 15 14 18 18 C 1.46500 * 125.97555 * 179.83561 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71172 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31273 * 125.97523 * 179.97438 * 14 13 11 28 28 H 1.08992 * 109.47089 * 300.00028 * 1 2 3 29 29 H 1.09002 * 109.47052 * 60.00337 * 1 2 3 30 30 H 1.09003 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47307 * 240.00034 * 2 1 3 32 32 H 1.08997 * 109.47162 * 120.00379 * 2 1 3 33 33 H 1.08996 * 109.47326 * 65.00406 * 5 3 2 34 34 H 1.08998 * 109.46608 * 185.00233 * 5 3 2 35 35 H 1.08998 * 109.47264 * 300.00303 * 7 6 5 36 36 H 1.09000 * 109.47303 * 60.00336 * 7 6 5 37 37 H 1.09003 * 109.47631 * 180.02562 * 7 6 5 38 38 H 0.97008 * 119.99919 * 95.00048 * 8 3 2 39 39 H 0.96999 * 120.00441 * 359.97438 * 13 11 9 40 40 H 1.07994 * 126.06888 * 359.97438 * 15 14 13 41 41 H 1.08004 * 126.05929 * 180.25923 * 16 15 14 42 42 H 1.09004 * 109.47078 * 4.71934 * 18 17 16 43 43 H 1.08993 * 109.47364 * 244.71705 * 18 17 16 44 44 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 4.1293 0.6404 0.9121 7 6 5.5565 0.5742 0.8849 8 7 1.6524 2.0975 1.2518 9 6 0.4351 2.6643 1.3670 10 8 -0.3398 2.6327 0.4335 11 6 0.0402 3.3325 2.6429 12 8 0.8154 3.3646 3.5764 13 7 -1.1769 3.8998 2.7579 14 6 -1.5471 4.5253 3.9536 15 6 -0.7540 4.6347 5.1077 16 6 -1.4658 5.3107 6.0376 17 7 -2.6675 5.6116 5.5016 18 6 -3.7502 6.3381 6.1696 19 6 -4.1467 7.5283 5.3345 20 1 -3.6428 7.7237 4.3995 21 6 -5.1525 8.3676 5.7641 22 7 -5.7697 8.1266 6.9002 23 14 -5.6444 9.8425 4.7286 24 1 -6.7459 10.5755 5.4029 25 1 -4.4762 10.7448 4.5659 26 1 -6.1022 9.3796 3.3940 27 7 -2.6965 5.1126 4.1930 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8499 1.0377 -1.0960 34 1 3.9355 2.4654 -0.0365 35 1 5.8825 0.1493 -0.0644 36 1 5.9689 1.5772 0.9948 37 1 5.9068 -0.0546 1.7035 38 1 2.2719 2.1231 1.9979 39 1 -1.7963 3.8745 2.0118 40 1 0.2481 4.2510 5.2292 41 1 -1.1328 5.5627 7.0336 42 1 -3.4102 6.6779 7.1480 43 1 -4.6089 5.6781 6.2925 44 1 -5.5145 7.3606 7.4379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322450737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:54 Heat of formation + Delta-G solvation = -33.976346 kcal Electronic energy + Delta-G solvation = -26929.713426 eV Core-core repulsion = 22884.586597 eV Total energy + Delta-G solvation = -4045.126829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20692 -40.42220 -39.04518 -38.22206 -36.06210 -34.97723 -33.69587 -32.58918 -30.97218 -29.80748 -29.48220 -26.98281 -26.56411 -25.15907 -23.82673 -22.97571 -21.68894 -20.89347 -20.57059 -19.75362 -18.38022 -17.46465 -17.22506 -16.77257 -16.53652 -16.23649 -16.17327 -15.70262 -15.35467 -15.02909 -14.75888 -14.33696 -14.02951 -13.79474 -13.47264 -13.33638 -13.23674 -13.06122 -12.65341 -12.52037 -12.32319 -12.02551 -11.93266 -11.72973 -11.45226 -11.37727 -11.19133 -11.04645 -10.84164 -10.57740 -10.21256 -10.16418 -10.08082 -9.60196 -9.44611 -9.03791 -8.59610 -8.30581 -7.63526 -6.59754 -4.34002 1.18444 2.01754 2.58902 2.97633 3.10709 3.25918 3.37723 3.39929 3.58551 3.60862 3.79589 4.21878 4.35527 4.40721 4.48320 4.75389 4.86225 4.86577 4.92439 5.03446 5.13802 5.16717 5.24995 5.33768 5.34298 5.60845 5.62604 5.74613 5.87686 6.01194 6.03530 6.20902 6.25792 6.33529 6.51335 6.58225 6.70593 6.90557 7.17905 7.30580 7.58409 7.68137 7.76404 7.92027 8.31579 8.45045 8.59026 9.34066 10.77962 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.002200 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.757518 B =12726.387020 C =13114.822282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.147 3.853 4 H 0.106 0.894 5 C 0.051 3.949 6 O -0.386 6.386 7 C 0.031 3.969 8 N -0.691 5.691 9 C 0.517 3.483 10 O -0.511 6.511 11 C 0.512 3.488 12 O -0.499 6.499 13 N -0.599 5.599 14 C 0.253 3.747 15 C -0.283 4.283 16 C 0.053 3.947 17 N -0.313 5.313 18 C 0.248 3.752 19 C -0.609 4.609 20 H 0.064 0.936 21 C 0.023 3.977 22 N -0.904 5.904 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.292 5.292 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.423 0.577 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.938 -15.796 -13.004 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.043 3.957 4 H 0.124 0.876 5 C -0.026 4.026 6 O -0.305 6.305 7 C -0.065 4.065 8 N -0.345 5.345 9 C 0.297 3.703 10 O -0.387 6.387 11 C 0.291 3.709 12 O -0.372 6.372 13 N -0.247 5.247 14 C 0.000 4.000 15 C -0.314 4.314 16 C -0.097 4.097 17 N -0.095 5.095 18 C 0.130 3.870 19 C -0.647 4.647 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.539 5.539 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.211 1.211 27 N -0.123 5.123 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.255 0.745 39 H 0.261 0.739 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.551 -14.243 -13.352 26.931 hybrid contribution 2.043 -1.374 0.237 2.473 sum 20.594 -15.618 -13.115 28.983 Atomic orbital electron populations 1.21852 0.94791 1.01053 1.02959 1.21878 0.96811 0.95037 1.03142 1.21296 0.92375 0.94643 0.87350 0.87579 1.22874 0.92659 0.95421 0.91694 1.87902 1.20440 1.70525 1.51660 1.22770 0.80624 1.01195 1.01932 1.45708 1.15923 1.55373 1.17516 1.19814 0.82967 0.79662 0.87877 1.90799 1.50634 1.57694 1.39528 1.19979 0.82083 0.80237 0.88555 1.90711 1.50564 1.56663 1.39226 1.42002 1.16038 1.52570 1.14130 1.19021 0.94362 0.99278 0.87347 1.21528 1.03709 1.13603 0.92607 1.22580 0.87149 0.99824 1.00163 1.48865 1.12801 1.40180 1.07667 1.19808 0.83166 0.91623 0.92385 1.22095 1.23284 1.10429 1.08900 0.91796 1.25931 0.92850 1.01846 0.97535 1.70856 1.41121 1.29573 1.12358 0.83417 0.76470 0.74739 0.75009 1.20515 1.21226 1.21082 1.77430 1.18468 1.18481 0.97935 0.92667 0.92018 0.93208 0.90980 0.90641 0.91329 0.92169 0.93991 0.93853 0.89373 0.74509 0.73914 0.82010 0.81256 0.93471 0.94603 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.51 37.16 0.32 -1.11 16 2 C -0.13 -1.01 5.33 -26.73 -0.14 -1.15 16 3 C 0.15 1.12 2.66 -67.93 -0.18 0.93 16 4 H 0.11 0.82 7.58 -51.93 -0.39 0.43 16 5 C 0.05 0.29 5.68 37.16 0.21 0.50 16 6 O -0.39 -2.71 9.65 -35.23 -0.34 -3.05 16 7 C 0.03 0.14 11.01 101.05 1.11 1.26 16 8 N -0.69 -6.57 5.00 -54.27 -0.27 -6.85 16 9 C 0.52 6.29 6.45 -11.64 -0.08 6.21 16 10 O -0.51 -6.85 13.61 5.49 0.07 -6.78 16 11 C 0.51 7.51 7.85 -11.64 -0.09 7.42 16 12 O -0.50 -7.97 13.60 5.47 0.07 -7.89 16 13 N -0.60 -9.83 5.43 -11.58 -0.06 -9.89 16 14 C 0.25 5.09 8.10 -154.55 -1.25 3.84 16 15 C -0.28 -5.45 9.60 -39.82 -0.38 -5.83 16 16 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 17 N -0.31 -7.25 3.67 -62.56 -0.23 -7.48 16 18 C 0.25 6.23 5.57 -5.19 -0.03 6.20 16 19 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 20 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 21 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 22 N -0.90 -26.23 13.65 55.43 0.76 -25.48 16 23 Si 1.08 24.96 29.90 -169.99 -5.08 19.87 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 N -0.29 -6.79 12.42 31.41 0.39 -6.40 16 28 H 0.05 0.63 5.64 -51.93 -0.29 0.34 16 29 H 0.06 0.61 7.85 -51.93 -0.41 0.21 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.42 3.86 7.85 -40.82 -0.32 3.54 16 39 H 0.42 6.35 8.29 -40.82 -0.34 6.02 16 40 H 0.16 2.92 5.91 -52.49 -0.31 2.61 16 41 H 0.17 2.65 8.06 -52.48 -0.42 2.22 16 42 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 43 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 44 H 0.27 7.56 7.22 -40.82 -0.29 7.27 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -32.93 372.06 -6.39 -39.31 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.18 Total: 6.77 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.13 Total: 2.26 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.58 Total: -56.10 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.19 Total: -17.72 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -6.39 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322450737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.334 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds