Wall clock time and date at job start Tue Mar 31 2020 13:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47181 * 2 1 4 4 H 1.09003 * 109.47312 * 305.00300 * 3 2 1 5 5 C 1.52996 * 109.46956 * 184.99859 * 3 2 1 6 6 O 1.42894 * 109.47503 * 304.99862 * 5 3 2 7 7 C 1.42893 * 114.00329 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.46801 * 64.99703 * 3 2 1 9 9 C 1.34770 * 120.00256 * 275.00199 * 8 3 2 10 10 O 1.21360 * 120.00477 * 359.97438 * 9 8 3 11 11 C 1.49348 * 120.00144 * 180.02562 * 9 8 3 12 12 O 1.21382 * 119.99788 * 359.97438 * 11 9 8 13 13 N 1.34770 * 120.00144 * 179.97438 * 11 9 8 14 14 C 1.39937 * 119.99823 * 179.97438 * 13 11 9 15 15 C 1.40453 * 125.98116 * 359.97438 * 14 13 11 16 16 C 1.35215 * 107.86384 * 179.71599 * 15 14 13 17 17 N 1.34979 * 107.87970 * 0.42460 * 16 15 14 18 18 C 1.46500 * 125.97555 * 179.83561 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71172 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31273 * 125.97523 * 179.97438 * 14 13 11 28 28 H 1.08992 * 109.47089 * 300.00028 * 1 2 3 29 29 H 1.09002 * 109.47052 * 60.00337 * 1 2 3 30 30 H 1.09003 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47307 * 240.00034 * 2 1 3 32 32 H 1.08997 * 109.47162 * 120.00379 * 2 1 3 33 33 H 1.08996 * 109.47326 * 65.00406 * 5 3 2 34 34 H 1.08998 * 109.46608 * 185.00233 * 5 3 2 35 35 H 1.08998 * 109.47264 * 300.00303 * 7 6 5 36 36 H 1.09000 * 109.47303 * 60.00336 * 7 6 5 37 37 H 1.09003 * 109.47631 * 180.02562 * 7 6 5 38 38 H 0.97008 * 119.99919 * 95.00048 * 8 3 2 39 39 H 0.96999 * 120.00441 * 359.97438 * 13 11 9 40 40 H 1.07994 * 126.06888 * 359.97438 * 15 14 13 41 41 H 1.08004 * 126.05929 * 180.25923 * 16 15 14 42 42 H 1.09004 * 109.47078 * 4.71934 * 18 17 16 43 43 H 1.08993 * 109.47364 * 244.71705 * 18 17 16 44 44 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 4.1293 0.6404 0.9121 7 6 5.5565 0.5742 0.8849 8 7 1.6524 2.0975 1.2518 9 6 0.4351 2.6643 1.3670 10 8 -0.3398 2.6327 0.4335 11 6 0.0402 3.3325 2.6429 12 8 0.8154 3.3646 3.5764 13 7 -1.1769 3.8998 2.7579 14 6 -1.5471 4.5253 3.9536 15 6 -0.7540 4.6347 5.1077 16 6 -1.4658 5.3107 6.0376 17 7 -2.6675 5.6116 5.5016 18 6 -3.7502 6.3381 6.1696 19 6 -4.1467 7.5283 5.3345 20 1 -3.6428 7.7237 4.3995 21 6 -5.1525 8.3676 5.7641 22 7 -5.7697 8.1266 6.9002 23 14 -5.6444 9.8425 4.7286 24 1 -6.7459 10.5755 5.4029 25 1 -4.4762 10.7448 4.5659 26 1 -6.1022 9.3796 3.3940 27 7 -2.6965 5.1126 4.1930 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8499 1.0377 -1.0960 34 1 3.9355 2.4654 -0.0365 35 1 5.8825 0.1493 -0.0644 36 1 5.9689 1.5772 0.9948 37 1 5.9068 -0.0546 1.7035 38 1 2.2719 2.1231 1.9979 39 1 -1.7963 3.8745 2.0118 40 1 0.2481 4.2510 5.2292 41 1 -1.1328 5.5627 7.0336 42 1 -3.4102 6.6779 7.1480 43 1 -4.6089 5.6781 6.2925 44 1 -5.5145 7.3606 7.4379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322450737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:53 Heat of formation + Delta-G solvation = -57.728580 kcal Electronic energy + Delta-G solvation = -26930.743401 eV Core-core repulsion = 22884.586597 eV Total energy + Delta-G solvation = -4046.156804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54144 -41.69408 -40.07446 -38.93146 -36.95073 -36.37236 -35.56073 -33.39802 -32.76304 -31.10227 -30.40464 -28.51635 -27.26114 -26.42087 -24.91064 -24.39579 -22.93434 -22.14762 -21.58100 -21.10256 -19.56624 -19.22780 -18.39175 -17.99034 -17.55996 -17.17482 -16.89444 -16.75809 -16.29223 -16.10549 -15.92089 -15.67733 -15.53093 -15.26506 -15.01918 -14.36278 -14.09778 -13.98189 -13.90415 -13.78936 -13.63650 -13.27306 -13.17051 -12.73432 -12.61772 -12.47305 -12.25027 -12.15812 -11.96813 -11.95922 -11.76689 -11.66583 -11.03764 -10.80061 -10.69938 -10.59645 -10.25985 -9.92621 -9.31117 -8.79074 -6.56490 0.03158 0.81663 1.04956 1.50937 1.57251 1.69030 1.74693 1.80177 2.21646 2.46657 2.53592 2.83226 3.00556 3.23843 3.67984 3.80054 3.93711 4.08987 4.20447 4.42053 4.43288 4.50426 4.54760 4.60765 4.62353 4.62903 4.69532 4.73745 4.75970 4.90434 4.91789 4.96168 5.00820 5.16555 5.30055 5.46886 5.52392 5.68731 5.78579 5.89158 6.13986 6.21028 6.24381 6.39879 6.54046 6.79451 6.86131 7.18591 8.58044 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.002200 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.757518 B =12726.387020 C =13114.822282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.143 3.857 4 H 0.108 0.892 5 C 0.054 3.946 6 O -0.408 6.408 7 C 0.027 3.973 8 N -0.676 5.676 9 C 0.525 3.475 10 O -0.524 6.524 11 C 0.514 3.486 12 O -0.509 6.509 13 N -0.601 5.601 14 C 0.261 3.739 15 C -0.286 4.286 16 C 0.060 3.940 17 N -0.339 5.339 18 C 0.258 3.742 19 C -0.622 4.622 20 H 0.045 0.955 21 C -0.019 4.019 22 N -0.922 5.922 23 Si 1.119 2.881 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.277 1.277 27 N -0.341 5.341 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.421 0.579 39 H 0.428 0.572 40 H 0.178 0.822 41 H 0.208 0.792 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.061 -16.228 -14.142 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.040 3.960 4 H 0.126 0.874 5 C -0.023 4.023 6 O -0.327 6.327 7 C -0.069 4.069 8 N -0.329 5.329 9 C 0.304 3.696 10 O -0.401 6.401 11 C 0.296 3.704 12 O -0.382 6.382 13 N -0.250 5.250 14 C 0.007 3.993 15 C -0.316 4.316 16 C -0.089 4.089 17 N -0.121 5.121 18 C 0.139 3.861 19 C -0.660 4.660 20 H 0.063 0.937 21 C -0.219 4.219 22 N -0.558 5.558 23 Si 0.940 3.060 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.203 1.203 27 N -0.172 5.172 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.258 0.742 39 H 0.267 0.733 40 H 0.195 0.805 41 H 0.224 0.776 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.735 -14.719 -14.499 29.272 hybrid contribution 1.528 -1.386 0.559 2.137 sum 22.263 -16.105 -13.940 30.812 Atomic orbital electron populations 1.21827 0.96256 1.00998 1.01479 1.21839 0.95319 0.95195 1.03880 1.21523 0.94028 0.94289 0.86130 0.87401 1.22889 0.90882 0.95938 0.92550 1.87867 1.21763 1.70810 1.52264 1.22895 0.79456 1.01722 1.02844 1.45756 1.14656 1.54091 1.18423 1.19318 0.83768 0.79972 0.86540 1.90806 1.51228 1.58562 1.39500 1.20515 0.81143 0.79369 0.89406 1.90685 1.50682 1.56844 1.39974 1.42134 1.16922 1.52733 1.13252 1.19347 0.93563 0.97804 0.88618 1.21770 1.04136 1.13537 0.92182 1.23258 0.85600 0.98370 1.01627 1.48641 1.13574 1.41742 1.08164 1.19473 0.83565 0.90513 0.92561 1.22280 1.23457 1.11707 1.08583 0.93702 1.27254 0.92627 1.04125 0.97857 1.70948 1.41875 1.29847 1.13136 0.82887 0.76891 0.72301 0.73934 1.19954 1.19549 1.20256 1.77340 1.20477 1.20666 0.98681 0.94940 0.92616 0.92601 0.88774 0.91289 0.88988 0.91577 0.92704 0.93396 0.89062 0.74174 0.73333 0.80537 0.77573 0.92386 0.96437 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.51 71.98 0.61 -2.07 16 2 C -0.12 -1.67 5.33 30.60 0.16 -1.51 16 3 C 0.14 1.88 2.66 44.99 0.12 2.00 16 4 H 0.11 1.44 7.58 -2.39 -0.02 1.42 16 5 C 0.05 0.47 5.68 71.98 0.41 0.88 16 6 O -0.41 -4.78 9.65 -148.98 -1.44 -6.22 16 7 C 0.03 0.19 11.01 113.37 1.25 1.43 16 8 N -0.68 -11.88 5.00 -443.98 -2.22 -14.10 16 9 C 0.52 12.31 6.45 87.24 0.56 12.88 16 10 O -0.52 -13.72 13.61 -3.28 -0.04 -13.77 16 11 C 0.51 14.74 7.85 87.24 0.69 15.42 16 12 O -0.51 -15.65 13.60 -3.35 -0.05 -15.69 16 13 N -0.60 -19.66 5.43 -308.90 -1.68 -21.33 16 14 C 0.26 10.50 8.10 133.40 1.08 11.58 16 15 C -0.29 -10.69 9.60 22.11 0.21 -10.48 16 16 C 0.06 2.27 11.43 83.51 0.95 3.22 16 17 N -0.34 -15.84 3.67 -351.84 -1.29 -17.13 16 18 C 0.26 13.20 5.57 85.64 0.48 13.68 16 19 C -0.62 -35.46 9.24 25.60 0.24 -35.23 16 20 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 21 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 22 N -0.92 -53.87 13.65 21.45 0.29 -53.58 16 23 Si 1.12 50.00 29.90 68.60 2.05 52.05 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 N -0.34 -16.13 12.42 -54.54 -0.68 -16.81 16 28 H 0.03 0.73 5.64 -2.39 -0.01 0.71 16 29 H 0.05 1.06 7.85 -2.39 -0.02 1.04 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.05 7.73 -2.39 -0.02 1.03 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.42 7.10 7.85 -92.70 -0.73 6.37 16 39 H 0.43 13.00 8.29 -92.71 -0.77 12.24 16 40 H 0.18 6.06 5.91 -2.91 -0.02 6.04 16 41 H 0.21 5.98 8.06 -2.91 -0.02 5.96 16 42 H 0.06 2.81 7.94 -2.39 -0.02 2.79 16 43 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 44 H 0.26 15.05 7.22 -92.71 -0.67 14.38 16 Total: -1.00 -71.01 372.06 1.82 -69.19 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.35 Total: 26.17 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 7.22 Total: 11.22 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.58 Total: -122.95 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.53 Total: -35.68 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Total: -71.01 1.82 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322450737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.461 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds