Wall clock time and date at job start Tue Mar 31 2020 14:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47177 * 2 1 4 4 C 1.36902 * 120.00501 * 263.53165 * 3 2 1 5 5 H 1.07996 * 120.00960 * 183.77278 * 4 3 2 6 6 C 1.39026 * 119.99560 * 3.77463 * 4 3 2 7 7 N 1.31382 * 120.00153 * 32.62713 * 6 4 3 8 8 Si 1.86804 * 119.99749 * 212.63217 * 6 4 3 9 9 H 1.48492 * 109.47427 * 94.99465 * 8 6 4 10 10 H 1.48505 * 109.46856 * 214.99681 * 8 6 4 11 11 H 1.48505 * 109.47007 * 334.99323 * 8 6 4 12 12 C 1.34780 * 120.00012 * 83.53787 * 3 2 1 13 13 O 1.21637 * 119.99966 * 175.22024 * 12 3 2 14 14 C 1.47330 * 119.99564 * 355.21582 * 12 3 2 15 15 C 1.39780 * 120.21275 * 57.14519 * 14 12 3 16 16 C 1.37744 * 119.91962 * 180.02562 * 15 14 12 17 17 C 1.38628 * 120.36031 * 0.02562 * 16 15 14 18 18 C 1.37972 * 120.43382 * 359.71265 * 17 16 15 19 19 C 1.38939 * 120.07117 * 0.56517 * 18 17 16 20 20 N 1.38933 * 120.18216 * 179.71657 * 19 18 17 21 21 C 1.39713 * 120.00103 * 40.78673 * 20 19 18 22 22 C 1.38931 * 120.07845 * 22.48276 * 21 20 19 23 23 C 1.38097 * 119.92696 * 179.72679 * 22 21 20 24 24 C 1.38287 * 120.07292 * 0.54992 * 23 22 21 25 25 C 1.50695 * 119.92353 * 179.74566 * 24 23 22 26 26 C 1.38295 * 120.15552 * 359.72894 * 24 23 22 27 27 C 1.38104 * 120.07483 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47088 * 300.00242 * 1 2 3 30 30 H 1.08999 * 109.46527 * 59.99628 * 1 2 3 31 31 H 1.09003 * 109.46917 * 240.00219 * 2 1 3 32 32 H 1.09001 * 109.46929 * 120.00718 * 2 1 3 33 33 H 0.97000 * 120.00061 * 179.97438 * 7 6 4 34 34 H 1.07992 * 120.04520 * 359.97438 * 15 14 12 35 35 H 1.07997 * 119.82329 * 179.97438 * 16 15 14 36 36 H 1.08008 * 119.78430 * 179.97438 * 17 16 15 37 37 H 1.08007 * 119.96840 * 180.28085 * 18 17 16 38 38 H 0.97007 * 120.00029 * 220.50645 * 20 19 18 39 39 H 1.08001 * 120.03124 * 359.97438 * 22 21 20 40 40 H 1.07991 * 119.96192 * 180.30039 * 23 22 21 41 41 H 1.08999 * 109.47503 * 269.97765 * 25 24 23 42 42 H 1.08995 * 109.47385 * 29.98026 * 25 24 23 43 43 H 1.09002 * 109.47619 * 149.97714 * 25 24 23 44 44 H 1.07996 * 119.96622 * 180.02562 * 26 24 23 45 45 H 1.07997 * 120.03633 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3725 1.9821 -1.1780 5 1 2.7897 2.9782 -1.1722 6 6 2.1950 1.3100 -2.3820 7 7 1.1904 0.4757 -2.5268 8 14 3.3851 1.5929 -3.7938 9 1 4.4373 0.5454 -3.7718 10 1 2.6491 1.5283 -5.0820 11 1 4.0148 2.9301 -3.6500 12 6 2.1192 2.0603 1.1598 13 8 2.6056 3.1751 1.1715 14 6 1.6400 1.4524 2.4134 15 6 2.1500 0.2223 2.8385 16 6 1.6974 -0.3409 4.0112 17 6 0.7370 0.3055 4.7738 18 6 0.2274 1.5227 4.3709 19 6 0.6669 2.1043 3.1882 20 7 0.1510 3.3271 2.7773 21 6 -0.0696 4.3418 3.7119 22 6 0.6221 4.3411 4.9168 23 6 0.4058 5.3487 5.8361 24 6 -0.5065 6.3515 5.5632 25 6 -0.7441 7.4462 6.5712 26 6 -1.2011 6.3523 4.3673 27 6 -0.9852 5.3510 3.4410 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5140 0.8899 33 1 1.0664 0.0071 -3.3669 34 1 2.8974 -0.2864 2.2478 35 1 2.0922 -1.2915 4.3379 36 1 0.3884 -0.1447 5.6916 37 1 -0.5174 2.0218 4.9732 38 1 -0.0522 3.4778 1.8408 39 1 1.3311 3.5555 5.1325 40 1 0.9467 5.3513 6.7707 41 1 -1.5468 7.1503 7.2467 42 1 0.1676 7.6175 7.1433 43 1 -1.0252 8.3629 6.0527 44 1 -1.9125 7.1371 4.1572 45 1 -1.5276 5.3525 2.5071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576891663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:04 Heat of formation + Delta-G solvation = 36.520068 kcal Electronic energy + Delta-G solvation = -27406.780867 eV Core-core repulsion = 23775.560254 eV Total energy + Delta-G solvation = -3631.220612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.17546 -38.99480 -37.59735 -35.57999 -34.96665 -32.13029 -31.69541 -30.87491 -30.42359 -29.42298 -28.89580 -25.85702 -25.18340 -23.34977 -22.64053 -21.95525 -21.88436 -20.64371 -19.33214 -17.31771 -17.17139 -16.76703 -16.41177 -15.33056 -15.13825 -14.83847 -14.65068 -14.32104 -14.11169 -13.81429 -13.66410 -13.52857 -13.31962 -13.26574 -12.84418 -12.70886 -12.50419 -12.14791 -12.04315 -11.93700 -11.60821 -11.40907 -11.30950 -11.16059 -11.01942 -10.82208 -10.77778 -10.40647 -10.27254 -10.21537 -9.84427 -8.93283 -8.78363 -8.59573 -8.52240 -8.27255 -7.85556 -6.96835 -6.54773 -3.79872 1.35758 1.55389 1.61348 1.96760 3.08909 3.22404 3.28144 3.63400 3.70950 3.94952 4.04591 4.23165 4.83267 4.94081 4.96090 5.02055 5.18701 5.19622 5.28051 5.34746 5.42653 5.56618 5.59754 5.65939 5.72071 5.79741 5.86184 5.90438 6.10638 6.13941 6.19685 6.25756 6.46134 6.50707 6.52102 6.55406 6.62443 6.69950 6.75667 6.79186 6.82204 7.02846 7.16511 7.17156 7.35437 7.60502 7.74933 7.93934 8.02826 8.41988 9.09730 9.35311 9.94432 10.47756 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003796 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.607652 B = 7375.017186 C = 8520.409915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.107 3.893 3 N -0.424 5.424 4 C -0.316 4.316 5 H 0.108 0.892 6 C 0.039 3.961 7 N -0.845 5.845 8 Si 0.910 3.090 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.468 3.532 13 O -0.585 6.585 14 C -0.116 4.116 15 C -0.077 4.077 16 C -0.150 4.150 17 C -0.097 4.097 18 C -0.157 4.157 19 C 0.200 3.800 20 N -0.672 5.672 21 C 0.204 3.796 22 C -0.168 4.168 23 C -0.082 4.082 24 C -0.142 4.142 25 C -0.104 4.104 26 C -0.082 4.082 27 C -0.175 4.175 28 H 0.038 0.962 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.270 0.730 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.414 0.586 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 1.230 13.853 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 N -0.141 5.141 4 C -0.443 4.443 5 H 0.125 0.875 6 C -0.167 4.167 7 N -0.482 5.482 8 Si 0.736 3.264 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.257 3.743 13 O -0.471 6.471 14 C -0.122 4.122 15 C -0.096 4.096 16 C -0.169 4.169 17 C -0.116 4.116 18 C -0.178 4.178 19 C 0.101 3.899 20 N -0.293 5.293 21 C 0.104 3.896 22 C -0.189 4.189 23 C -0.101 4.101 24 C -0.143 4.143 25 C -0.161 4.161 26 C -0.101 4.101 27 C -0.197 4.197 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.251 0.749 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.016 1.592 13.721 14.696 hybrid contribution 0.387 -0.157 -1.287 1.353 sum -4.629 1.435 12.434 13.345 Atomic orbital electron populations 1.22015 0.96638 0.99938 1.01736 1.21770 0.94725 0.83829 1.01353 1.43826 1.53705 1.11169 1.05401 1.19714 1.39261 1.02904 0.82397 0.87451 1.25188 0.96062 0.96831 0.98590 1.70192 1.23587 1.28026 1.26443 0.86171 0.81080 0.79357 0.79783 1.20288 1.21104 1.19175 1.17604 0.87111 0.86397 0.83216 1.90647 1.49905 1.20319 1.86197 1.20190 0.96640 0.96723 0.98641 1.21184 0.99010 0.93624 0.95807 1.20906 0.99672 1.00610 0.95723 1.20893 0.96937 0.94488 0.99328 1.20886 1.02367 0.96628 0.97910 1.17473 0.92170 0.85855 0.94357 1.41852 1.67632 1.10097 1.09710 1.17789 0.93196 0.88606 0.89961 1.20892 1.01846 1.01376 0.94828 1.20751 0.97312 0.93478 0.98566 1.19677 0.99994 0.98177 0.96496 1.20649 1.01624 0.96349 0.97444 1.20710 0.98752 0.97565 0.93029 1.20719 1.00443 0.97191 1.01347 0.94269 0.95573 0.89569 0.88353 0.93536 0.92012 0.85494 0.86219 0.86238 0.85980 0.74889 0.85781 0.86350 0.91970 0.92089 0.92107 0.86307 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.71 37.16 0.36 -2.65 16 2 C 0.11 2.33 5.05 -4.04 -0.02 2.31 16 3 N -0.42 -10.57 2.63 -116.06 -0.31 -10.87 16 4 C -0.32 -8.53 9.40 -15.00 -0.14 -8.67 16 5 H 0.11 3.11 7.34 -52.49 -0.39 2.73 16 6 C 0.04 0.98 4.76 -17.45 -0.08 0.89 16 7 N -0.85 -20.90 9.13 55.50 0.51 -20.39 16 8 Si 0.91 19.87 29.66 -169.99 -5.04 14.83 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.47 11.48 6.33 -12.56 -0.08 11.40 16 13 O -0.58 -16.43 16.41 5.25 0.09 -16.34 16 14 C -0.12 -2.33 4.21 -104.79 -0.44 -2.77 16 15 C -0.08 -1.32 7.81 -39.19 -0.31 -1.63 16 16 C -0.15 -2.11 10.02 -39.62 -0.40 -2.51 16 17 C -0.10 -1.31 10.03 -39.53 -0.40 -1.71 16 18 C -0.16 -2.39 7.89 -39.42 -0.31 -2.70 16 19 C 0.20 3.65 5.64 -83.55 -0.47 3.18 16 20 N -0.67 -12.26 4.83 -8.22 -0.04 -12.30 16 21 C 0.20 3.37 6.10 -83.75 -0.51 2.86 16 22 C -0.17 -2.59 8.23 -39.38 -0.32 -2.91 16 23 C -0.08 -1.09 9.69 -39.61 -0.38 -1.47 16 24 C -0.14 -1.76 5.88 -104.59 -0.62 -2.37 16 25 C -0.10 -0.96 10.01 36.00 0.36 -0.60 16 26 C -0.08 -1.05 9.69 -39.61 -0.38 -1.43 16 27 C -0.18 -2.57 9.94 -39.37 -0.39 -2.96 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.52 7.32 -51.93 -0.38 0.14 16 30 H 0.09 2.02 6.60 -51.93 -0.34 1.68 16 31 H 0.10 2.31 5.75 -51.93 -0.30 2.01 16 32 H 0.05 0.90 4.32 -51.93 -0.22 0.68 16 33 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 34 H 0.13 2.12 6.81 -52.49 -0.36 1.76 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.12 1.71 7.19 -52.48 -0.38 1.34 16 38 H 0.41 8.05 8.43 -40.82 -0.34 7.70 16 39 H 0.12 1.97 6.46 -52.49 -0.34 1.64 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -29.59 365.62 -9.80 -39.39 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.98 Total: 13.93 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -4.54 Total: -13.74 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.16 Total: -43.56 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.04 Total: 14.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.59 -9.80 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576891663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.908 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds