Wall clock time and date at job start Tue Mar 31 2020 14:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99733 * 2 1 4 4 O 1.21558 * 120.00162 * 185.91562 * 3 2 1 5 5 C 1.47782 * 119.99910 * 5.91710 * 3 2 1 6 6 C 1.40655 * 119.74779 * 215.20469 * 5 3 2 7 7 C 1.35717 * 120.85102 * 180.02562 * 6 5 3 8 8 C 1.40713 * 120.01714 * 359.94792 * 7 6 5 9 9 C 1.40481 * 121.04593 * 180.02562 * 8 7 6 10 10 C 1.36146 * 119.71811 * 179.97438 * 9 8 7 11 11 C 1.39357 * 121.01335 * 0.02562 * 10 9 8 12 12 C 1.36095 * 120.95194 * 359.95108 * 11 10 9 13 13 C 1.40660 * 119.66020 * 0.04642 * 12 11 10 14 14 C 1.38486 * 119.74845 * 34.92513 * 5 3 2 15 15 C 1.46494 * 120.00371 * 179.97438 * 2 1 3 16 16 H 1.09001 * 110.91940 * 176.10344 * 15 2 1 17 17 C 1.55155 * 111.00505 * 300.00263 * 15 2 1 18 18 C 1.54320 * 102.94178 * 82.57408 * 17 15 2 19 19 N 1.47019 * 107.27425 * 22.19262 * 18 17 15 20 20 C 1.36935 * 125.65260 * 181.02715 * 19 18 17 21 21 H 1.08002 * 120.00043 * 174.90548 * 20 19 18 22 22 C 1.38811 * 119.99670 * 354.90623 * 20 19 18 23 23 N 1.31626 * 119.99748 * 214.18377 * 22 20 19 24 24 Si 1.86796 * 120.00321 * 34.45945 * 22 20 19 25 25 H 1.48500 * 109.47080 * 173.96032 * 24 22 20 26 26 H 1.48502 * 109.46806 * 293.96040 * 24 22 20 27 27 H 1.48500 * 109.47011 * 53.95864 * 24 22 20 28 28 C 1.47431 * 108.69996 * 1.28798 * 19 18 17 29 29 H 1.08994 * 109.47515 * 274.44153 * 1 2 3 30 30 H 1.08993 * 109.47611 * 34.45090 * 1 2 3 31 31 H 1.09005 * 109.46308 * 154.44269 * 1 2 3 32 32 H 1.07997 * 119.57350 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.99061 * 179.97438 * 7 6 5 34 34 H 1.07998 * 120.14400 * 0.02562 * 9 8 7 35 35 H 1.07998 * 119.49220 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.52512 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.16915 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.27328 * 0.02562 * 14 5 3 39 39 H 1.08999 * 110.72259 * 324.21076 * 17 15 2 40 40 H 1.09002 * 110.87328 * 201.00505 * 17 15 2 41 41 H 1.09005 * 109.88305 * 262.77392 * 18 17 15 42 42 H 1.09003 * 109.88307 * 141.61141 * 18 17 15 43 43 H 0.97007 * 119.99551 * 5.27957 * 23 22 20 44 44 H 1.09001 * 110.36571 * 94.48107 * 28 19 18 45 45 H 1.09001 * 110.36862 * 216.80492 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3496 1.1702 -0.1085 5 6 1.4057 2.4436 0.1319 6 6 1.8585 3.5830 -0.5575 7 6 1.2028 4.7666 -0.4520 8 6 0.0536 4.8652 0.3540 9 6 -0.6421 6.0793 0.4783 10 6 -1.7513 6.1442 1.2651 11 6 -2.2103 5.0224 1.9528 12 6 -1.5631 3.8291 1.8567 13 6 -0.4134 3.7235 1.0532 14 6 0.2749 2.5074 0.9288 15 6 2.1975 -1.2686 0.0006 16 1 3.2718 -1.0977 -0.0687 17 6 1.8484 -2.1119 1.2553 18 6 0.5313 -2.8061 0.8496 19 7 0.4795 -2.8198 -0.6196 20 6 -0.5402 -3.3305 -1.3776 21 1 -0.5226 -3.2192 -2.4517 22 6 -1.5963 -3.9912 -0.7654 23 7 -2.1772 -5.0058 -1.3702 24 14 -2.1984 -3.4356 0.9134 25 1 -3.4172 -4.2006 1.2802 26 1 -1.1384 -3.6785 1.9246 27 1 -2.5182 -1.9861 0.8697 28 6 1.7102 -2.1982 -1.1417 29 1 -0.3634 0.0796 1.0245 30 1 -0.3634 0.8473 -0.5813 31 1 -0.3632 -0.9272 -0.4434 32 1 2.7398 3.5153 -1.1781 33 1 1.5629 5.6328 -0.9871 34 1 -0.2990 6.9574 -0.0487 35 1 -2.2835 7.0793 1.3577 36 1 -3.0926 5.1011 2.5707 37 1 -1.9302 2.9677 2.3949 38 1 -0.0718 1.6292 1.4532 39 1 1.6943 -1.4686 2.1217 40 1 2.6263 -2.8484 1.4570 41 1 -0.3183 -2.2495 1.2453 42 1 0.5179 -3.8274 1.2305 43 1 -1.8194 -5.3407 -2.2074 44 1 2.4580 -2.9610 -1.3584 45 1 1.4908 -1.6158 -2.0366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033611368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:50 Heat of formation + Delta-G solvation = 65.733224 kcal Electronic energy + Delta-G solvation = -27503.286925 eV Core-core repulsion = 23873.333090 eV Total energy + Delta-G solvation = -3629.953835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.158 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85235 -39.73025 -37.85913 -36.27397 -34.59523 -33.03439 -32.32728 -30.67303 -29.90857 -29.26177 -28.35474 -26.45730 -24.57004 -23.61285 -23.30575 -22.14519 -21.27385 -20.60330 -19.09918 -17.84668 -17.51280 -17.09628 -17.07014 -16.22983 -15.51984 -15.28113 -15.07624 -14.60010 -14.54331 -13.99713 -13.82310 -13.61442 -13.49010 -13.39380 -13.21810 -12.95203 -12.75173 -12.38461 -12.13034 -11.84338 -11.63334 -11.45318 -11.39929 -11.32700 -11.01502 -11.00155 -10.85144 -10.80913 -10.18402 -10.15841 -9.82973 -9.63012 -9.11477 -8.82026 -8.54320 -8.29925 -8.08979 -7.13723 -6.45042 -3.20743 0.21981 0.69541 1.78822 2.45692 3.06035 3.24544 3.37853 3.44002 3.64612 3.93242 4.33865 4.48961 4.58897 4.61875 4.69330 4.85865 4.88268 4.96591 5.08150 5.12196 5.13392 5.19658 5.25023 5.39032 5.49652 5.51663 5.58847 5.69265 5.78007 5.79447 5.82090 5.92170 6.01054 6.04544 6.18774 6.20367 6.23381 6.29060 6.34227 6.43026 6.49393 6.56321 6.59000 6.74098 6.77131 6.89599 7.58064 7.65494 8.26632 8.26813 8.95250 9.52487 10.18931 11.02396 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.003942 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.709107 B = 7101.817684 C = 8370.118623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.584 5.584 3 C 0.555 3.445 4 O -0.545 6.545 5 C -0.120 4.120 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.037 4.037 9 C -0.113 4.113 10 C -0.110 4.110 11 C -0.123 4.123 12 C -0.095 4.095 13 C -0.061 4.061 14 C -0.069 4.069 15 C 0.120 3.880 16 H 0.107 0.893 17 C -0.141 4.141 18 C 0.118 3.882 19 N -0.606 5.606 20 C -0.347 4.347 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.900 5.900 24 Si 1.027 2.973 25 H -0.298 1.298 26 H -0.277 1.277 27 H -0.294 1.294 28 C 0.129 3.871 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.044 0.956 43 H 0.266 0.734 44 H 0.040 0.960 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 20.747 6.360 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.315 5.315 3 C 0.344 3.656 4 O -0.424 6.424 5 C -0.123 4.123 6 C -0.086 4.086 7 C -0.134 4.134 8 C -0.037 4.037 9 C -0.131 4.131 10 C -0.128 4.128 11 C -0.141 4.141 12 C -0.113 4.113 13 C -0.061 4.061 14 C -0.087 4.087 15 C 0.016 3.984 16 H 0.125 0.875 17 C -0.179 4.179 18 C -0.007 4.007 19 N -0.335 5.335 20 C -0.473 4.473 21 H 0.098 0.902 22 C -0.209 4.209 23 N -0.538 5.538 24 Si 0.859 3.141 25 H -0.226 1.226 26 H -0.204 1.204 27 H -0.222 1.222 28 C 0.002 3.998 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.779 20.385 7.359 21.850 hybrid contribution 0.926 0.366 -1.110 1.492 sum 3.705 20.751 6.249 21.986 Atomic orbital electron populations 1.22597 0.78782 1.06757 1.01080 1.47608 1.07530 1.05051 1.71300 1.18384 0.87002 0.83604 0.76655 1.90738 1.13738 1.87291 1.50645 1.19889 0.96790 0.94435 1.01172 1.20794 0.99093 0.91197 0.97560 1.20902 0.95141 0.98008 0.99379 1.18208 0.95437 0.93384 0.96638 1.21036 0.95884 0.96673 0.99459 1.20904 0.96498 0.98652 0.96736 1.20862 1.00261 0.92909 1.00065 1.21142 0.94219 0.98358 0.97572 1.18039 0.96414 0.93137 0.98527 1.22002 0.92679 0.97389 0.96626 1.22372 0.96804 0.82454 0.96755 0.87500 1.22984 0.98971 0.98804 0.97184 1.21948 0.94380 0.98250 0.86076 1.44905 1.17850 1.70663 1.00033 1.19912 1.01920 1.34262 0.91188 0.90217 1.25544 0.96727 0.94250 1.04333 1.70915 1.46243 1.18229 1.18419 0.84543 0.76107 0.75925 0.77556 1.22560 1.20402 1.22218 1.21945 0.89740 0.93358 0.94714 0.93225 0.91768 0.85821 0.85044 0.85086 0.85498 0.85944 0.85800 0.85197 0.83871 0.91264 0.90163 0.95529 0.93853 0.92394 0.94226 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 7.18 59.85 0.43 1.26 16 2 N -0.58 -9.78 2.91 -172.49 -0.50 -10.28 16 3 C 0.55 9.26 7.35 -12.36 -0.09 9.17 16 4 O -0.55 -10.40 16.19 5.31 0.09 -10.31 16 5 C -0.12 -1.71 5.18 -104.99 -0.54 -2.25 16 6 C -0.07 -0.86 9.50 -39.57 -0.38 -1.23 16 7 C -0.12 -1.25 9.73 -39.55 -0.38 -1.63 16 8 C -0.04 -0.41 5.75 -106.76 -0.61 -1.02 16 9 C -0.11 -1.02 9.76 -39.49 -0.39 -1.41 16 10 C -0.11 -0.91 9.95 -39.92 -0.40 -1.31 16 11 C -0.12 -1.08 9.95 -39.94 -0.40 -1.48 16 12 C -0.09 -0.97 9.77 -39.44 -0.39 -1.35 16 13 C -0.06 -0.73 5.74 -106.85 -0.61 -1.34 16 14 C -0.07 -0.88 7.53 -38.72 -0.29 -1.17 16 15 C 0.12 2.07 3.66 -65.67 -0.24 1.83 16 16 H 0.11 1.80 7.02 -51.93 -0.36 1.44 16 17 C -0.14 -2.33 6.48 -24.90 -0.16 -2.49 16 18 C 0.12 2.43 3.52 -3.07 -0.01 2.42 16 19 N -0.61 -13.90 1.85 -169.93 -0.31 -14.22 16 20 C -0.35 -9.37 9.91 -15.06 -0.15 -9.52 16 21 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 22 C -0.01 -0.16 5.42 -17.43 -0.09 -0.25 16 23 N -0.90 -27.14 13.70 55.49 0.76 -26.38 16 24 Si 1.03 24.50 25.17 -169.99 -4.28 20.22 16 25 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.28 -6.07 5.09 56.52 0.29 -5.78 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.13 2.54 6.46 -2.41 -0.02 2.53 16 29 H 0.05 0.74 6.33 -51.93 -0.33 0.41 16 30 H 0.06 0.98 6.48 -51.93 -0.34 0.64 16 31 H 0.12 2.49 4.45 -51.93 -0.23 2.25 16 32 H 0.13 1.60 7.98 -52.49 -0.42 1.18 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.75 5.19 -52.49 -0.27 1.48 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.03 0.56 3.76 -51.93 -0.20 0.37 16 42 H 0.04 0.96 6.84 -51.93 -0.35 0.61 16 43 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -31.66 349.67 -9.70 -41.36 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.00 Total: 3.61 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -4.72 Total: -9.27 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.06 Total: -50.88 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.28 Total: 20.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.66 -9.70 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033611368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.093 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds