Wall clock time and date at job start Tue Mar 31 2020 13:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 C 1.52996 * 109.47152 * 240.00755 * 2 1 3 5 5 O 1.42905 * 109.46938 * 304.99376 * 4 2 1 6 6 C 1.35957 * 117.00134 * 180.02562 * 5 4 2 7 7 C 1.38665 * 120.06188 * 359.97438 * 6 5 4 8 8 C 1.38177 * 119.97029 * 179.72938 * 7 6 5 9 9 C 1.38267 * 120.09523 * 359.97438 * 8 7 6 10 10 C 1.38260 * 120.12266 * 0.02562 * 9 8 7 11 11 C 1.38331 * 120.03136 * 359.95517 * 10 9 8 12 12 F 1.35099 * 120.04481 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47436 * 120.00041 * 2 1 3 14 14 C 1.34781 * 120.00076 * 275.00412 * 13 2 1 15 15 O 1.21275 * 119.99953 * 359.97438 * 14 13 2 16 16 C 1.50698 * 119.99880 * 179.97438 * 14 13 2 17 17 H 1.08994 * 109.47291 * 319.99995 * 16 14 13 18 18 N 1.46896 * 109.47103 * 199.99769 * 16 14 13 19 19 C 1.53001 * 109.47008 * 79.99959 * 16 14 13 20 20 C 1.53007 * 109.46917 * 184.99691 * 19 16 14 21 21 C 1.50703 * 109.46792 * 180.02562 * 20 19 16 22 22 H 1.07996 * 120.00098 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99457 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99971 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99554 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47111 * 89.99906 * 25 23 21 27 27 H 1.48502 * 109.46747 * 209.99718 * 25 23 21 28 28 H 1.48498 * 109.47236 * 329.99513 * 25 23 21 29 29 H 1.08997 * 109.47322 * 299.99738 * 1 2 3 30 30 H 1.08999 * 109.47210 * 60.00281 * 1 2 3 31 31 H 1.09001 * 109.46630 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47063 * 184.99798 * 4 2 1 33 33 H 1.08998 * 109.47566 * 64.99379 * 4 2 1 34 34 H 1.07998 * 120.01490 * 359.75268 * 7 6 5 35 35 H 1.08001 * 119.95195 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.93782 * 179.97438 * 9 8 7 37 37 H 1.08004 * 119.97931 * 179.97438 * 10 9 8 38 38 H 0.96993 * 119.99843 * 95.00357 * 13 2 1 39 39 H 1.00900 * 111.00448 * 176.04885 * 18 16 14 40 40 H 1.00901 * 110.99933 * 300.00051 * 18 16 14 41 41 H 1.08997 * 109.47354 * 304.99524 * 19 16 14 42 42 H 1.08997 * 109.47205 * 65.00193 * 19 16 14 43 43 H 1.08997 * 109.46972 * 300.00067 * 20 19 16 44 44 H 1.08997 * 109.46773 * 60.00237 * 20 19 16 45 45 H 0.97001 * 119.99209 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4703 -2.0302 -1.3096 6 6 1.8236 -2.8091 -2.3664 7 6 2.6997 -2.3233 -3.3252 8 6 3.0619 -3.1185 -4.3955 9 6 2.5524 -4.3987 -4.5118 10 6 1.6787 -4.8871 -3.5581 11 6 1.3129 -4.0955 -2.4842 12 9 0.4596 -4.5726 -1.5519 13 7 2.0184 -0.6906 1.1961 14 6 2.1471 -0.0182 2.3571 15 8 1.8590 1.1585 2.4115 16 6 2.6489 -0.7288 3.5877 17 1 2.2140 -1.7272 3.6335 18 7 2.2604 0.0300 4.7840 19 6 4.1737 -0.8391 3.5267 20 6 4.6729 -1.6682 4.7118 21 6 6.1749 -1.7762 4.6520 22 1 6.7190 -1.3008 3.8494 23 6 6.8543 -2.4821 5.6222 24 7 6.1917 -3.0606 6.5998 25 14 8.7161 -2.6155 5.5485 26 1 9.3233 -1.4857 6.2970 27 1 9.1448 -3.9001 6.1577 28 1 9.1603 -2.5667 4.1323 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1263 -0.7992 -1.2057 33 1 1.7516 -0.1581 -2.1370 34 1 3.0990 -1.3239 -3.2352 35 1 3.7439 -2.7397 -5.1423 36 1 2.8369 -5.0179 -5.3497 37 1 1.2818 -5.8872 -3.6515 38 1 2.2491 -1.6316 1.1525 39 1 2.5290 -0.4584 5.6250 40 1 2.6515 0.9599 4.7652 41 1 4.4660 -1.3240 2.5953 42 1 4.6122 0.1579 3.5704 43 1 4.3806 -1.1832 5.6432 44 1 4.2345 -2.6651 4.6680 45 1 6.6698 -3.5575 7.2821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118123713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:16 Heat of formation + Delta-G solvation = -110.672696 kcal Electronic energy + Delta-G solvation = -27052.690461 eV Core-core repulsion = 22984.317867 eV Total energy + Delta-G solvation = -4068.372594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.98437 -40.53405 -39.62287 -37.95851 -35.84128 -35.07757 -32.84816 -31.39715 -31.06338 -29.97945 -29.86404 -27.21791 -26.48006 -24.13818 -23.24160 -22.83776 -21.27993 -20.51518 -19.86561 -18.80726 -17.49258 -17.39604 -16.95186 -16.57196 -16.20229 -15.98411 -15.45268 -15.18404 -14.86471 -14.74259 -14.58871 -14.45238 -14.10321 -13.96896 -13.52777 -13.21816 -13.13248 -12.98488 -12.70839 -12.39859 -12.20710 -12.15948 -11.89810 -11.67033 -11.49867 -11.31733 -11.23709 -11.08292 -10.91553 -10.68576 -9.98802 -9.90777 -9.32481 -9.28938 -9.20236 -9.03577 -8.55044 -8.43899 -8.17045 -6.08365 -4.11530 0.75244 0.89058 2.63736 2.94559 3.20167 3.23624 3.26931 3.33593 3.36406 3.90581 4.23209 4.39207 4.40889 4.54074 4.65255 4.73825 4.85208 4.89086 5.01986 5.05508 5.19491 5.26600 5.27894 5.31087 5.57568 5.58094 5.61667 5.67494 5.77812 5.79986 5.83999 6.00059 6.16911 6.26799 6.29229 6.50539 6.54337 6.87823 6.92741 7.44676 7.52328 7.62283 7.71691 7.88632 7.92471 8.31192 8.46419 8.94374 9.53260 11.02563 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010040 B = 0.002976 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.175515 B = 9406.671508 C =11149.693266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.106 0.894 4 C 0.049 3.951 5 O -0.301 6.301 6 C 0.101 3.899 7 C -0.183 4.183 8 C -0.090 4.090 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.069 3.931 12 F -0.131 7.131 13 N -0.729 5.729 14 C 0.528 3.472 15 O -0.539 6.539 16 C 0.074 3.926 17 H 0.097 0.903 18 N -0.830 5.830 19 C -0.137 4.137 20 C 0.024 3.976 21 C -0.524 4.524 22 H 0.054 0.946 23 C 0.058 3.942 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.406 0.594 39 H 0.354 0.646 40 H 0.345 0.655 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 0.092 -23.455 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.124 0.876 4 C -0.027 4.027 5 O -0.214 6.214 6 C 0.055 3.945 7 C -0.202 4.202 8 C -0.108 4.108 9 C -0.150 4.150 10 C -0.136 4.136 11 C 0.049 3.951 12 F -0.109 7.109 13 N -0.383 5.383 14 C 0.316 3.684 15 O -0.415 6.415 16 C -0.041 4.041 17 H 0.115 0.885 18 N -0.362 5.362 19 C -0.176 4.176 20 C -0.013 4.013 21 C -0.562 4.562 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.240 0.760 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.935 0.704 -23.291 25.740 hybrid contribution 2.260 -0.582 0.199 2.342 sum -8.675 0.122 -23.093 24.668 Atomic orbital electron populations 1.22119 0.94431 1.03056 1.02463 1.20957 0.95348 0.96677 0.82530 0.87618 1.23290 0.98644 0.81569 0.99170 1.86156 1.66940 1.26375 1.41951 1.19017 0.96103 0.90343 0.89055 1.21212 1.01020 1.01942 0.96022 1.21039 0.98766 0.93810 0.97187 1.20947 0.98259 0.96238 0.99517 1.21062 0.99108 1.00242 0.93188 1.17030 0.96187 0.91130 0.90722 1.91527 1.67735 1.88001 1.63662 1.46054 1.68391 1.14532 1.09341 1.20906 0.75925 0.87244 0.84374 1.90622 1.49730 1.16273 1.84889 1.21474 0.96355 0.97389 0.88882 0.88541 1.58738 1.67083 1.06840 1.03568 1.22373 0.91494 1.01527 1.02236 1.19104 0.96064 0.94525 0.91610 1.21177 0.91996 1.32958 1.10099 0.92755 1.25016 0.98486 0.95434 0.95389 1.69951 1.35583 1.34364 1.13242 0.86584 0.85652 0.77501 0.78220 1.20618 1.21131 1.19909 0.91571 0.91961 0.91465 0.90703 0.90290 0.84438 0.85036 0.84867 0.84059 0.75956 0.83049 0.84192 0.92623 0.92710 0.96394 0.96300 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.29 37.16 0.35 -1.41 16 2 C 0.15 1.63 2.98 -67.94 -0.20 1.43 16 3 H 0.11 1.20 7.58 -51.93 -0.39 0.80 16 4 C 0.05 0.42 4.48 37.16 0.17 0.59 16 5 O -0.30 -3.24 8.85 -19.61 -0.17 -3.41 16 6 C 0.10 1.04 6.69 -39.18 -0.26 0.78 16 7 C -0.18 -1.46 9.04 -39.45 -0.36 -1.82 16 8 C -0.09 -0.61 10.04 -39.59 -0.40 -1.00 16 9 C -0.13 -0.88 10.04 -39.56 -0.40 -1.28 16 10 C -0.12 -0.96 10.02 -39.54 -0.40 -1.35 16 11 C 0.07 0.74 7.31 -39.30 -0.29 0.46 16 12 F -0.13 -1.65 17.11 2.25 0.04 -1.61 16 13 N -0.73 -9.61 5.06 -53.81 -0.27 -9.88 16 14 C 0.53 8.72 7.04 -10.98 -0.08 8.64 16 15 O -0.54 -10.27 15.91 5.56 0.09 -10.18 16 16 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 17 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 18 N -0.83 -14.55 8.94 -5.66 -0.05 -14.60 16 19 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 20 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 21 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 22 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 25 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 32 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 33 H 0.08 0.50 7.66 -51.93 -0.40 0.10 16 34 H 0.14 0.84 6.30 -52.49 -0.33 0.51 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 38 H 0.41 5.04 8.38 -40.82 -0.34 4.70 16 39 H 0.35 6.23 7.55 -39.29 -0.30 5.94 16 40 H 0.34 6.07 8.58 -39.29 -0.34 5.74 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -32.57 381.46 -8.25 -40.82 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.59 Total: 11.72 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.76 Total: -9.48 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.41 Total: -49.91 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.09 Total: -13.60 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.57 -8.25 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118123713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.852 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds