Wall clock time and date at job start Tue Mar 31 2020 14:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46509 * 109.46774 * 2 1 4 4 C 1.36932 * 119.99854 * 275.73604 * 3 2 1 5 5 H 1.07999 * 120.00246 * 33.27559 * 4 3 2 6 6 C 1.38817 * 119.99773 * 213.27260 * 4 3 2 7 7 N 1.31621 * 119.99756 * 17.26078 * 6 4 3 8 8 Si 1.86797 * 119.99928 * 197.26503 * 6 4 3 9 9 H 1.48506 * 109.47198 * 59.99945 * 8 6 4 10 10 H 1.48504 * 109.46898 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47381 * 299.99799 * 8 6 4 12 12 C 1.46499 * 119.99391 * 95.73362 * 3 2 1 13 13 H 1.09002 * 109.46711 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.47070 * 60.08768 * 12 3 2 15 15 C 1.52994 * 109.47646 * 300.08119 * 12 3 2 16 16 N 1.46506 * 109.47140 * 305.00474 * 15 12 3 17 17 C 1.34778 * 119.99954 * 180.02562 * 16 15 12 18 18 O 1.21359 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.49379 * 119.99831 * 179.97438 * 17 16 15 20 20 O 1.21362 * 119.99740 * 0.02562 * 19 17 16 21 21 N 1.34769 * 119.99988 * 179.72036 * 19 17 16 22 22 C 1.39353 * 120.00294 * 180.27717 * 21 19 17 23 23 C 1.42057 * 126.89875 * 359.97438 * 22 21 19 24 24 C 1.35243 * 103.95711 * 179.97438 * 23 22 21 25 25 C 1.50693 * 126.68842 * 179.97438 * 24 23 22 26 26 O 1.34088 * 106.61750 * 359.97438 * 24 23 22 27 27 N 1.20918 * 111.75298 * 359.73186 * 26 24 23 28 28 H 1.08996 * 109.47655 * 60.00186 * 1 2 3 29 29 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47451 * 299.99722 * 1 2 3 31 31 H 1.09000 * 109.47088 * 240.00392 * 2 1 3 32 32 H 1.08992 * 109.46987 * 120.00043 * 2 1 3 33 33 H 0.97000 * 119.99721 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47436 * 59.99552 * 14 12 3 35 35 H 1.09003 * 109.47075 * 179.97438 * 14 12 3 36 36 H 1.09002 * 109.46736 * 299.99228 * 14 12 3 37 37 H 1.08995 * 109.47119 * 185.00487 * 15 12 3 38 38 H 1.09006 * 109.47263 * 65.00077 * 15 12 3 39 39 H 0.97003 * 119.99876 * 359.97438 * 16 15 12 40 40 H 0.97003 * 119.99955 * 0.27677 * 21 19 17 41 41 H 1.08004 * 128.01801 * 0.02562 * 23 22 21 42 42 H 1.08999 * 109.47336 * 90.00089 * 25 24 23 43 43 H 1.09002 * 109.47014 * 209.99820 * 25 24 23 44 44 H 1.09003 * 109.47418 * 329.99262 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1347 2.0663 -1.1799 5 1 1.4367 1.8812 -1.9830 6 6 3.1499 2.9988 -1.3439 7 7 4.1869 2.9919 -0.5333 8 14 3.0442 4.2632 -2.7148 9 1 1.8239 5.0897 -2.5329 10 1 4.2440 5.1374 -2.6753 11 1 2.9805 3.5681 -4.0255 12 6 2.3818 2.0296 1.2625 13 1 2.7198 3.0468 1.0644 14 6 3.5076 1.2413 1.9348 15 6 1.1629 2.0668 2.1863 16 7 0.0465 2.7174 1.4959 17 6 -1.1387 2.8640 2.1206 18 8 -1.2813 2.4566 3.2548 19 6 -2.2769 3.5278 1.4168 20 8 -2.1343 3.9348 0.2823 21 7 -3.4637 3.6694 2.0394 22 6 -4.5272 4.2835 1.3808 23 6 -4.5233 4.8111 0.0618 24 6 -5.7779 5.2891 -0.1020 25 6 -6.3309 5.9641 -1.3306 26 8 -6.4336 5.0452 1.0419 27 7 -5.7310 4.4838 1.8502 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.8961 3.6437 -0.6476 34 1 4.3760 1.2148 1.2767 35 1 3.7785 1.7238 2.8739 36 1 3.1706 0.2237 2.1328 37 1 1.4080 2.6268 3.0887 38 1 0.8800 1.0492 2.4558 39 1 0.1606 3.0433 0.5894 40 1 -3.5777 3.3438 2.9460 41 1 -3.7079 4.8263 -0.6462 42 1 -6.7639 5.2146 -1.9931 43 1 -7.1006 6.6781 -1.0375 44 1 -5.5283 6.4879 -1.8498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156870607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:01 Heat of formation + Delta-G solvation = 21.867397 kcal Electronic energy + Delta-G solvation = -28295.252278 eV Core-core repulsion = 24252.547015 eV Total energy + Delta-G solvation = -4042.705263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.04099 -40.75957 -38.73393 -37.04751 -35.93882 -33.91778 -33.77151 -32.12112 -31.92216 -31.18303 -28.26613 -28.03378 -26.77835 -24.67011 -23.97462 -23.19229 -21.79777 -21.19676 -20.25576 -19.43737 -18.19792 -17.86564 -17.62038 -16.95854 -16.85342 -16.01199 -15.87722 -15.39397 -14.77610 -14.62246 -14.05452 -13.88205 -13.78051 -13.72568 -13.51607 -13.32815 -12.77228 -12.70465 -12.45031 -12.26252 -11.94428 -11.91796 -11.59371 -11.55802 -11.41950 -11.10773 -11.00499 -10.80622 -10.74720 -10.35629 -10.13127 -9.71879 -9.59978 -9.59258 -9.52106 -9.05567 -8.76960 -8.53318 -6.73112 -5.92117 -3.41023 1.03126 1.45050 2.01775 2.26101 2.93784 3.30077 3.32990 3.39048 3.41842 3.54352 4.14756 4.40476 4.59136 4.69733 4.86715 5.02472 5.12472 5.21625 5.32147 5.32337 5.56711 5.72230 5.75121 5.97135 6.01054 6.12764 6.16156 6.28409 6.34619 6.43938 6.49219 6.57979 6.65532 6.73283 6.78639 6.85904 7.09584 7.35014 7.42724 7.51810 7.75093 7.78750 8.11751 8.20649 8.39299 9.11765 9.72481 10.28714 11.14681 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.003656 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.727053 B = 7656.863427 C = 8916.267680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.265 4.265 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.175 3.825 13 H 0.103 0.897 14 C -0.144 4.144 15 C 0.097 3.903 16 N -0.657 5.657 17 C 0.504 3.496 18 O -0.535 6.535 19 C 0.517 3.483 20 O -0.483 6.483 21 N -0.611 5.611 22 C 0.249 3.751 23 C -0.226 4.226 24 C -0.025 4.025 25 C -0.073 4.073 26 O 0.097 5.903 27 N -0.388 5.388 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.425 0.575 40 H 0.430 0.570 41 H 0.193 0.807 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 3.114 2.088 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.395 4.395 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.067 3.933 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.028 4.028 16 N -0.309 5.309 17 C 0.283 3.717 18 O -0.413 6.413 19 C 0.298 3.702 20 O -0.353 6.353 21 N -0.265 5.265 22 C 0.000 4.000 23 C -0.249 4.249 24 C -0.088 4.088 25 C -0.130 4.130 26 O 0.036 5.964 27 N -0.103 5.103 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.264 0.736 40 H 0.269 0.731 41 H 0.210 0.790 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.094 2.934 3.159 15.698 hybrid contribution 0.561 0.638 -1.176 1.451 sum -14.534 3.572 1.983 15.097 Atomic orbital electron populations 1.22455 1.00129 0.99079 1.01371 1.20771 0.91562 0.87398 0.98912 1.43901 1.75996 1.08302 1.02250 1.19059 1.08696 1.18316 0.93385 0.91765 1.25142 0.94437 1.01212 0.97858 1.69989 1.07819 1.35968 1.39637 0.86467 0.77088 0.81632 0.82179 1.20714 1.21687 1.20813 1.20532 0.88597 0.99939 0.84206 0.87955 1.22017 1.01026 0.97923 0.99325 1.22481 0.87536 0.96585 0.96221 1.45876 1.09543 1.55737 1.19740 1.19432 0.84028 0.81763 0.86493 1.90754 1.82836 1.50090 1.17664 1.20680 0.83197 0.79834 0.86484 1.90750 1.81958 1.45469 1.17152 1.42146 1.08038 1.57106 1.19162 1.20482 0.88191 0.99130 0.92221 1.22795 0.99313 1.05885 0.96859 1.24441 0.92223 1.01404 0.90761 1.20353 1.02478 1.00164 0.90034 1.84792 1.35657 1.56914 1.19008 1.74063 1.02825 1.18512 1.14949 0.93237 0.94680 0.93526 0.93890 0.94408 0.93452 0.90066 0.94698 0.95022 0.91936 0.91883 0.73552 0.73148 0.79025 0.89235 0.89774 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.87 37.16 0.37 -2.66 16 2 C 0.14 2.74 5.67 -4.04 -0.02 2.72 16 3 N -0.58 -12.77 1.85 -165.66 -0.31 -13.08 16 4 C -0.27 -6.52 9.26 -15.06 -0.14 -6.66 16 5 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 6 C 0.01 0.35 4.85 -17.43 -0.08 0.26 16 7 N -0.89 -23.21 10.60 55.49 0.59 -22.62 16 8 Si 0.90 20.37 29.59 -169.99 -5.03 15.34 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.18 3.58 1.92 -67.93 -0.13 3.45 16 13 H 0.10 2.40 6.03 -51.93 -0.31 2.09 16 14 C -0.14 -2.78 9.05 37.16 0.34 -2.45 16 15 C 0.10 1.73 4.34 -4.04 -0.02 1.71 16 16 N -0.66 -11.66 3.98 -60.75 -0.24 -11.90 16 17 C 0.50 8.47 7.65 -11.62 -0.09 8.38 16 18 O -0.53 -9.54 16.48 5.49 0.09 -9.45 16 19 C 0.52 8.12 7.85 -11.62 -0.09 8.03 16 20 O -0.48 -8.30 13.75 5.49 0.08 -8.23 16 21 N -0.61 -8.54 5.41 -11.85 -0.06 -8.60 16 22 C 0.25 3.52 8.17 -154.93 -1.27 2.26 16 23 C -0.23 -2.92 9.79 -39.19 -0.38 -3.30 16 24 C -0.02 -0.26 7.48 -35.38 -0.26 -0.52 16 25 C -0.07 -0.42 10.44 36.00 0.38 -0.04 16 26 O 0.10 1.17 11.19 17.05 0.19 1.36 16 27 N -0.39 -5.38 12.10 31.18 0.38 -5.00 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.83 4.99 -51.93 -0.26 0.57 16 31 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.04 0.70 6.45 -51.93 -0.33 0.37 16 33 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.08 1.81 7.39 -51.93 -0.38 1.43 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.56 6.67 -51.93 -0.35 0.22 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.13 7.05 -51.93 -0.37 0.76 16 39 H 0.43 8.18 7.37 -40.82 -0.30 7.88 16 40 H 0.43 5.38 8.29 -40.82 -0.34 5.05 16 41 H 0.19 2.58 6.22 -52.48 -0.33 2.26 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -27.81 364.36 -6.14 -33.94 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.90 Total: 11.57 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -1.41 Total: 11.17 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.35 Total: -61.20 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.36 Total: -16.31 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.81 -6.14 -33.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156870607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.810 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds