Wall clock time and date at job start Tue Mar 31 2020 13:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46799 * 2 1 4 4 C 1.53005 * 109.46742 * 240.00191 * 2 1 3 5 5 N 1.46497 * 109.47075 * 184.99720 * 4 2 1 6 6 C 1.46498 * 120.00203 * 270.00525 * 5 4 2 7 7 C 1.36938 * 120.00017 * 90.00070 * 5 4 2 8 8 H 1.08006 * 120.00034 * 341.81384 * 7 5 4 9 9 C 1.38809 * 120.00387 * 162.08246 * 7 5 4 10 10 N 1.31617 * 119.99768 * 352.93326 * 9 7 5 11 11 Si 1.86799 * 120.00195 * 172.93112 * 9 7 5 12 12 H 1.48502 * 109.47240 * 90.00175 * 11 9 7 13 13 H 1.48496 * 109.46993 * 210.00068 * 11 9 7 14 14 H 1.48499 * 109.47210 * 329.99929 * 11 9 7 15 15 N 1.46502 * 109.47207 * 120.00588 * 2 1 3 16 16 C 1.34771 * 119.99775 * 274.99560 * 15 2 1 17 17 O 1.21283 * 120.00039 * 0.02562 * 16 15 2 18 18 C 1.50705 * 120.00155 * 179.97438 * 16 15 2 19 19 H 1.09000 * 109.46520 * 60.00027 * 18 16 15 20 20 C 1.52997 * 109.47059 * 300.00493 * 18 16 15 21 21 O 1.42898 * 109.47399 * 179.97438 * 18 16 15 22 22 C 1.35956 * 117.00138 * 205.24352 * 21 18 16 23 23 C 1.38664 * 120.05892 * 353.84270 * 22 21 18 24 24 C 1.38186 * 119.96358 * 179.72413 * 23 22 21 25 25 C 1.38261 * 120.09539 * 0.55051 * 24 23 22 26 26 C 1.38258 * 120.12627 * 359.72189 * 25 24 23 27 27 C 1.38328 * 120.02882 * 0.02562 * 26 25 24 28 28 F 1.35103 * 120.04683 * 180.02562 * 27 26 25 29 29 H 1.09007 * 109.46337 * 299.99483 * 1 2 3 30 30 H 1.08995 * 109.47290 * 59.99051 * 1 2 3 31 31 H 1.08994 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46647 * 65.00175 * 4 2 1 33 33 H 1.08993 * 109.47150 * 305.00067 * 4 2 1 34 34 H 1.08998 * 109.46728 * 269.37403 * 6 5 4 35 35 H 1.09004 * 109.47520 * 29.37612 * 6 5 4 36 36 H 1.09008 * 109.47241 * 149.37770 * 6 5 4 37 37 H 0.97000 * 120.00427 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00180 * 94.99853 * 15 2 1 39 39 H 1.08997 * 109.47220 * 180.02562 * 20 18 16 40 40 H 1.09004 * 109.46765 * 299.99596 * 20 18 16 41 41 H 1.09000 * 109.47611 * 59.99215 * 20 18 16 42 42 H 1.08002 * 120.01634 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.94926 * 180.27687 * 24 23 22 44 44 H 1.07999 * 119.93364 * 179.75114 * 25 24 23 45 45 H 1.07997 * 119.98393 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1908 6 6 4.3343 0.2341 -1.7614 7 6 4.0850 -1.9159 -0.6026 8 1 3.5119 -2.5415 0.0657 9 6 5.4161 -2.2130 -0.8608 10 7 6.0766 -1.5340 -1.7745 11 14 6.2699 -3.5765 0.0886 12 1 6.1008 -4.8632 -0.6333 13 1 7.7164 -3.2638 0.2106 14 1 5.6713 -3.6864 1.4431 15 7 2.0184 -0.6907 1.1961 16 6 2.1472 -0.0185 2.3570 17 8 1.8584 1.1582 2.4117 18 6 2.6490 -0.7291 3.5877 19 1 3.6481 -1.1216 3.3984 20 6 1.7045 -1.8826 3.9313 21 8 2.6979 0.1892 4.6814 22 6 3.5780 -0.0867 5.6802 23 6 4.2848 -1.2797 5.6732 24 6 5.1831 -1.5556 6.6864 25 6 5.3699 -0.6489 7.7133 26 6 4.6630 0.5393 7.7271 27 6 3.7663 0.8231 6.7128 28 9 3.0758 1.9842 6.7257 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7197 -1.2953 34 1 4.5515 0.0038 -2.8044 35 1 3.8045 1.1849 -1.7019 36 1 5.2676 0.3026 -1.2024 37 1 7.0067 -1.7418 -1.9553 38 1 2.2491 -1.6319 1.1525 39 1 2.0672 -2.3963 4.8216 40 1 0.7054 -1.4900 4.1204 41 1 1.6676 -2.5830 3.0968 42 1 4.1363 -1.9910 4.8742 43 1 5.7368 -2.4828 6.6783 44 1 6.0696 -0.8690 8.5060 45 1 4.8104 1.2457 8.5306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:32 Heat of formation + Delta-G solvation = -63.655425 kcal Electronic energy + Delta-G solvation = -28368.707634 eV Core-core repulsion = 24302.373861 eV Total energy + Delta-G solvation = -4066.333773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.76127 -40.53006 -39.16797 -37.50567 -36.30248 -34.13729 -32.62695 -31.12940 -30.80682 -30.01009 -29.46895 -26.21907 -25.69518 -24.85998 -23.24367 -22.55501 -21.75817 -20.38481 -19.83295 -18.64637 -17.49977 -17.07200 -16.68194 -16.10512 -16.01124 -15.69845 -15.29721 -15.10734 -14.97373 -14.52826 -14.32556 -13.90064 -13.75795 -13.23056 -13.06581 -13.02880 -12.97890 -12.57890 -12.47708 -12.19370 -12.07827 -11.97150 -11.71390 -11.62089 -11.23854 -11.09773 -11.06613 -10.93896 -10.91885 -10.44993 -10.27722 -10.09285 -9.96914 -9.38219 -9.07983 -8.62061 -8.52600 -8.30020 -6.87635 -5.80192 -3.24826 0.96603 1.10801 2.67378 2.96708 3.26392 3.29543 3.35440 3.43225 3.77283 4.15135 4.36987 4.57336 4.62730 4.74842 4.83709 4.99389 5.04461 5.05608 5.25532 5.29734 5.40664 5.47835 5.50913 5.58120 5.76355 5.81659 5.89288 5.89759 5.93760 6.01494 6.09564 6.15219 6.21514 6.40126 6.42471 6.49413 6.74383 6.81701 7.01687 7.20251 7.44307 7.54975 7.80207 7.99279 8.30282 8.64029 9.14234 9.77744 10.26076 11.23520 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.004354 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.300706 B = 6429.277076 C = 8013.307841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.079 0.921 4 C 0.142 3.858 5 N -0.602 5.602 6 C 0.163 3.837 7 C -0.249 4.249 8 H 0.066 0.934 9 C 0.000 4.000 10 N -0.907 5.907 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 N -0.689 5.689 16 C 0.520 3.480 17 O -0.533 6.533 18 C 0.063 3.937 19 H 0.104 0.896 20 C -0.174 4.174 21 O -0.277 6.277 22 C 0.104 3.896 23 C -0.186 4.186 24 C -0.088 4.088 25 C -0.134 4.134 26 C -0.118 4.118 27 C 0.068 3.932 28 F -0.131 7.131 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.017 0.983 35 H -0.010 1.010 36 H 0.066 0.934 37 H 0.253 0.747 38 H 0.403 0.597 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 -1.980 14.693 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.325 5.325 6 C 0.019 3.981 7 C -0.379 4.379 8 H 0.084 0.916 9 C -0.198 4.198 10 N -0.553 5.553 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.207 1.207 15 N -0.341 5.341 16 C 0.303 3.697 17 O -0.409 6.409 18 C 0.003 3.997 19 H 0.121 0.879 20 C -0.232 4.232 21 O -0.189 6.189 22 C 0.057 3.943 23 C -0.204 4.204 24 C -0.106 4.106 25 C -0.152 4.152 26 C -0.137 4.137 27 C 0.048 3.952 28 F -0.110 7.110 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.009 0.991 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.239 0.761 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.674 -0.935 14.605 15.696 hybrid contribution 0.765 -1.197 0.343 1.461 sum -4.908 -2.131 14.948 15.877 Atomic orbital electron populations 1.22129 0.96362 1.01486 1.01812 1.21934 0.92301 0.98424 0.86220 0.90330 1.21052 0.86078 0.98246 0.93322 1.43887 0.98909 1.21523 1.68165 1.20904 0.94121 0.85604 0.97507 1.19046 0.94542 1.03785 1.20523 0.91640 1.24964 0.97922 0.98788 0.98106 1.70089 1.10056 1.41872 1.33270 0.86302 0.79250 0.81902 0.79274 1.21388 1.21581 1.20694 1.45793 1.65645 1.14310 1.08365 1.19785 0.78610 0.87254 0.84013 1.90698 1.49808 1.15555 1.84887 1.22351 1.01918 0.89822 0.85630 0.87890 1.22332 1.00454 0.96975 1.03425 1.86263 1.55085 1.49206 1.28321 1.19122 0.92053 0.93754 0.89372 1.21330 1.00261 0.96836 1.01995 1.21041 0.96700 0.99641 0.93240 1.20912 1.00882 0.93723 0.99696 1.21008 0.96072 0.98838 0.97766 1.17014 0.97956 0.83437 0.96759 1.91518 1.77665 1.45395 1.96383 0.92825 0.91957 0.92814 0.92790 0.93001 0.96483 0.99108 0.91569 0.93669 0.76074 0.90872 0.90743 0.89873 0.84071 0.84976 0.84932 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.12 2.06 2.88 -67.92 -0.20 1.87 16 3 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 4 C 0.14 2.64 5.32 -4.04 -0.02 2.62 16 5 N -0.60 -14.09 2.83 -181.11 -0.51 -14.60 16 6 C 0.16 3.99 8.98 59.85 0.54 4.53 16 7 C -0.25 -6.14 8.85 -15.06 -0.13 -6.27 16 8 H 0.07 1.48 6.33 -52.48 -0.33 1.14 16 9 C 0.00 0.00 5.22 -17.43 -0.09 -0.09 16 10 N -0.91 -25.34 10.14 55.49 0.56 -24.78 16 11 Si 0.90 20.26 29.56 -169.99 -5.02 15.23 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 N -0.69 -11.83 4.38 -53.80 -0.24 -12.07 16 16 C 0.52 9.56 7.20 -10.99 -0.08 9.48 16 17 O -0.53 -11.86 16.16 -14.35 -0.23 -12.09 16 18 C 0.06 0.95 2.64 -27.88 -0.07 0.88 16 19 H 0.10 1.51 6.33 -51.93 -0.33 1.18 16 20 C -0.17 -1.99 9.07 37.16 0.34 -1.66 16 21 O -0.28 -4.73 9.20 -39.51 -0.36 -5.10 16 22 C 0.10 1.54 6.61 -39.18 -0.26 1.28 16 23 C -0.19 -2.26 8.25 -39.44 -0.33 -2.58 16 24 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 25 C -0.13 -1.25 10.04 -39.57 -0.40 -1.64 16 26 C -0.12 -1.27 10.02 -39.54 -0.40 -1.67 16 27 C 0.07 0.97 7.31 -39.30 -0.29 0.68 16 28 F -0.13 -2.10 17.11 2.25 0.04 -2.07 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.02 0.44 7.78 -51.93 -0.40 0.03 16 35 H -0.01 -0.21 8.07 -51.93 -0.42 -0.63 16 36 H 0.07 1.79 6.46 -51.92 -0.34 1.46 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.40 6.51 5.99 -40.82 -0.24 6.27 16 39 H 0.07 0.72 6.89 -51.93 -0.36 0.36 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.83 7.56 -51.93 -0.39 0.43 16 42 H 0.14 1.56 5.42 -52.49 -0.28 1.28 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -32.00 372.19 -8.01 -40.01 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.42 Total: 5.61 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.43 Total: 4.24 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.18 Total: -51.44 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.60 Total: -17.19 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.00 -8.01 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.650 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds