Wall clock time and date at job start Tue Mar 31 2020 13:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46717 * 2 1 4 4 O 1.42905 * 109.46717 * 119.99648 * 2 1 3 5 5 C 1.35946 * 117.00314 * 275.14672 * 4 2 1 6 6 C 1.38671 * 120.06248 * 4.86429 * 5 4 2 7 7 C 1.38179 * 119.96842 * 179.97438 * 6 5 4 8 8 C 1.38263 * 120.09784 * 359.97438 * 7 6 5 9 9 C 1.38264 * 120.12446 * 0.02562 * 8 7 6 10 10 C 1.38332 * 120.02987 * 0.25562 * 9 8 7 11 11 F 1.35095 * 120.04732 * 179.72483 * 10 9 8 12 12 C 1.50695 * 109.47342 * 239.99727 * 2 1 3 13 13 O 1.21271 * 120.00166 * 244.99986 * 12 2 1 14 14 N 1.34780 * 119.99708 * 64.99733 * 12 2 1 15 15 C 1.46496 * 120.00056 * 179.97438 * 14 12 2 16 16 H 1.09003 * 109.47299 * 325.00725 * 15 14 12 17 17 C 1.53002 * 109.46653 * 85.00507 * 15 14 12 18 18 C 1.52996 * 109.47294 * 205.00273 * 15 14 12 19 19 N 1.46498 * 109.46978 * 55.00600 * 18 15 14 20 20 C 1.46504 * 119.99960 * 269.99454 * 19 18 15 21 21 C 1.36944 * 120.00154 * 89.99963 * 19 18 15 22 22 H 1.07992 * 120.00000 * 21.40376 * 21 19 18 23 23 C 1.38811 * 119.99677 * 201.40336 * 21 19 18 24 24 N 1.31617 * 120.00298 * 15.16010 * 23 21 19 25 25 Si 1.86801 * 119.99800 * 195.16043 * 23 21 19 26 26 H 1.48501 * 109.46947 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47079 * 119.99775 * 25 23 21 28 28 H 1.48499 * 109.47009 * 240.00063 * 25 23 21 29 29 H 1.08997 * 109.46987 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46717 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47050 * 300.00107 * 1 2 3 32 32 H 1.07990 * 120.01325 * 359.95195 * 6 5 4 33 33 H 1.07997 * 119.95267 * 180.02562 * 7 6 5 34 34 H 1.07997 * 119.93858 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.98259 * 179.97438 * 9 8 7 36 36 H 0.96999 * 119.99890 * 0.02562 * 14 12 2 37 37 H 1.09003 * 109.47090 * 60.00089 * 17 15 14 38 38 H 1.08999 * 109.46840 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.47513 * 300.00087 * 17 15 14 40 40 H 1.09009 * 109.47105 * 175.00418 * 18 15 14 41 41 H 1.08999 * 109.47528 * 294.99964 * 18 15 14 42 42 H 1.09001 * 109.46810 * 92.62246 * 20 19 18 43 43 H 1.08997 * 109.46942 * 212.62471 * 20 19 18 44 44 H 1.09005 * 109.47057 * 332.62702 * 20 19 18 45 45 H 0.97000 * 119.99629 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1096 0.0621 2.3054 6 6 1.6658 1.3757 2.3262 7 6 1.7712 2.1216 3.4846 8 6 2.3182 1.5600 4.6235 9 6 2.7619 0.2506 4.6072 10 6 2.6642 -0.4990 3.4487 11 9 3.1028 -1.7767 3.4307 12 6 2.0325 -0.7104 -1.2304 13 8 2.6531 -1.7466 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2808 -0.8845 -3.6481 16 1 3.2411 -1.3521 -3.4308 17 6 1.2734 -1.9581 -4.0647 18 6 2.4506 0.1244 -4.7856 19 7 3.3221 1.2160 -4.3441 20 6 2.7449 2.4022 -3.7067 21 6 4.6764 1.1278 -4.5272 22 1 5.0778 0.4602 -5.2752 23 6 5.5332 1.8964 -3.7513 24 7 5.0882 2.4758 -2.6565 25 14 7.3177 2.1086 -4.2612 26 1 7.5650 1.3609 -5.5202 27 1 7.6029 3.5499 -4.4767 28 1 8.2039 1.5831 -3.1917 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.2383 1.8156 1.4374 33 1 1.4251 3.1445 3.5007 34 1 2.3989 2.1452 5.5276 35 1 3.1891 -0.1856 5.4980 36 1 1.2959 0.6347 -2.5391 37 1 0.3131 -1.4905 -4.2820 38 1 1.6369 -2.4714 -4.9549 39 1 1.1524 -2.6769 -3.2543 40 1 2.8974 -0.3714 -5.6474 41 1 1.4763 0.5268 -5.0629 42 1 2.7398 2.2672 -2.6251 43 1 3.3420 3.2780 -3.9608 44 1 1.7235 2.5437 -4.0600 45 1 5.6869 3.0132 -2.1146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:35 Heat of formation + Delta-G solvation = -65.978624 kcal Electronic energy + Delta-G solvation = -28412.990697 eV Core-core repulsion = 24346.556183 eV Total energy + Delta-G solvation = -4066.434514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.68771 -40.45794 -39.08908 -37.43955 -36.24756 -34.06459 -32.53728 -31.04120 -30.74754 -30.04218 -29.46041 -26.23993 -25.64869 -24.80878 -23.18395 -22.49687 -21.68627 -20.35482 -19.80070 -18.58410 -17.34410 -16.95410 -16.79726 -16.14134 -15.95597 -15.55441 -15.18003 -14.97277 -14.86227 -14.48076 -14.31265 -13.84718 -13.60162 -13.29200 -13.12182 -12.99218 -12.93377 -12.51663 -12.43614 -12.17067 -12.02756 -11.96500 -11.66190 -11.48463 -11.20532 -11.12822 -10.99931 -10.87274 -10.78215 -10.58104 -10.25419 -9.98506 -9.87880 -9.29894 -9.01156 -8.64201 -8.41297 -8.22473 -6.81590 -5.78187 -3.20272 1.03432 1.17944 2.73968 3.08109 3.37327 3.45493 3.46970 3.49948 3.83012 4.22264 4.48966 4.63345 4.67757 4.79029 4.88597 5.04464 5.09678 5.11801 5.29303 5.35103 5.43514 5.50537 5.52767 5.66307 5.81514 5.86938 5.95012 5.95968 5.96128 6.06285 6.07606 6.20259 6.27101 6.44206 6.49128 6.55239 6.58045 6.84080 7.09392 7.23608 7.27783 7.54628 7.78405 8.01829 8.34177 8.72570 9.18684 9.81706 10.28641 11.28406 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.004042 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.968342 B = 6925.359148 C = 8104.195834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 H 0.103 0.897 4 O -0.276 6.276 5 C 0.105 3.895 6 C -0.184 4.184 7 C -0.088 4.088 8 C -0.135 4.135 9 C -0.118 4.118 10 C 0.068 3.932 11 F -0.131 7.131 12 C 0.524 3.476 13 O -0.527 6.527 14 N -0.692 5.692 15 C 0.118 3.882 16 H 0.086 0.914 17 C -0.159 4.159 18 C 0.143 3.857 19 N -0.597 5.597 20 C 0.161 3.839 21 C -0.256 4.256 22 H 0.070 0.930 23 C 0.005 3.995 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.395 0.605 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.025 0.975 43 H 0.047 0.953 44 H -0.004 1.004 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 0.065 9.754 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 H 0.121 0.879 4 O -0.188 6.188 5 C 0.058 3.942 6 C -0.202 4.202 7 C -0.106 4.106 8 C -0.153 4.153 9 C -0.137 4.137 10 C 0.048 3.952 11 F -0.110 7.110 12 C 0.307 3.693 13 O -0.402 6.402 14 N -0.344 5.344 15 C 0.011 3.989 16 H 0.104 0.896 17 C -0.219 4.219 18 C 0.014 3.986 19 N -0.319 5.319 20 C 0.016 3.984 21 C -0.386 4.386 22 H 0.087 0.913 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.732 3.268 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.159 0.841 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.229 0.771 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.014 0.986 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.212 -0.822 9.868 15.722 hybrid contribution 0.921 0.589 -0.147 1.103 sum -11.290 -0.233 9.721 14.901 Atomic orbital electron populations 1.22318 0.92882 1.04180 1.03657 1.22334 0.95323 0.97768 0.84146 0.87924 1.86272 1.80735 1.36399 1.15383 1.19128 0.96968 0.91410 0.86652 1.21281 1.05475 0.92930 1.00561 1.21013 0.97772 0.99827 0.92022 1.20898 1.00880 0.94458 0.99073 1.21003 1.01383 0.94874 0.96453 1.17025 1.03742 0.81009 0.93396 1.91516 1.87377 1.35107 1.96964 1.19706 0.80092 0.85460 0.83997 1.90700 1.39575 1.23681 1.86263 1.45636 1.56813 1.26986 1.04929 1.21919 0.97276 0.93705 0.85980 0.89550 1.22158 0.99272 0.99153 1.01268 1.21204 0.94095 0.89154 0.94099 1.43928 1.03122 1.14545 1.70316 1.20828 0.91906 0.89646 0.95975 1.19226 0.81548 1.23616 1.14190 0.91263 1.24935 0.97841 1.01130 0.95438 1.70053 1.34710 1.36515 1.13645 0.86221 0.85148 0.77449 0.77955 1.20301 1.21652 1.21789 0.90098 0.90798 0.90894 0.84135 0.85016 0.84986 0.84216 0.77104 0.93132 0.91977 0.92918 0.92120 0.93919 0.95669 0.93430 0.98602 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.13 37.16 0.34 -1.60 16 2 C 0.06 1.01 2.64 -27.88 -0.07 0.94 16 3 H 0.10 1.55 6.29 -51.93 -0.33 1.22 16 4 O -0.28 -4.99 9.20 -39.43 -0.36 -5.35 16 5 C 0.11 1.64 6.61 -39.17 -0.26 1.38 16 6 C -0.18 -2.28 8.25 -39.44 -0.33 -2.61 16 7 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 8 C -0.13 -1.32 10.04 -39.56 -0.40 -1.71 16 9 C -0.12 -1.36 10.02 -39.54 -0.40 -1.75 16 10 C 0.07 1.03 7.31 -39.30 -0.29 0.74 16 11 F -0.13 -2.24 17.11 2.25 0.04 -2.20 16 12 C 0.52 10.18 7.14 -10.99 -0.08 10.10 16 13 O -0.53 -12.58 16.17 -14.30 -0.23 -12.81 16 14 N -0.69 -12.20 4.35 -53.81 -0.23 -12.43 16 15 C 0.12 2.18 2.88 -67.93 -0.20 1.98 16 16 H 0.09 1.96 7.58 -51.93 -0.39 1.57 16 17 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 18 C 0.14 2.67 5.33 -4.05 -0.02 2.65 16 19 N -0.60 -13.94 2.78 -181.12 -0.50 -14.44 16 20 C 0.16 3.57 7.68 59.85 0.46 4.03 16 21 C -0.26 -6.86 9.66 -15.06 -0.15 -7.00 16 22 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 23 C 0.01 0.14 5.04 -17.43 -0.09 0.05 16 24 N -0.90 -25.63 10.76 55.49 0.60 -25.03 16 25 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 32 H 0.14 1.52 5.45 -52.49 -0.29 1.24 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.39 6.12 6.91 -40.82 -0.28 5.84 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.12 8.03 -51.92 -0.42 0.70 16 41 H 0.04 0.69 7.87 -51.93 -0.41 0.28 16 42 H 0.03 0.59 6.94 -51.93 -0.36 0.22 16 43 H 0.05 1.18 7.12 -51.93 -0.37 0.81 16 44 H 0.00 -0.08 7.86 -51.93 -0.41 -0.49 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -33.90 374.34 -8.13 -42.03 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.53 Total: 3.75 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.51 Total: 3.89 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.14 Total: -51.90 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.59 Total: -18.16 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.90 -8.13 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.948 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds