Wall clock time and date at job start Tue Mar 31 2020 13:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47355 * 2 1 4 4 C 1.52997 * 109.46958 * 120.00196 * 2 1 3 5 5 N 1.46502 * 109.47155 * 175.00293 * 4 2 1 6 6 C 1.46507 * 119.99494 * 269.99731 * 5 4 2 7 7 C 1.36935 * 120.00459 * 89.99682 * 5 4 2 8 8 H 1.08002 * 119.99910 * 21.57460 * 7 5 4 9 9 C 1.38810 * 119.99887 * 201.57169 * 7 5 4 10 10 N 1.31611 * 120.00476 * 18.77647 * 9 7 5 11 11 Si 1.86803 * 119.99749 * 198.77297 * 9 7 5 12 12 H 1.48500 * 109.47258 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47228 * 120.00024 * 11 9 7 14 14 H 1.48494 * 109.47390 * 239.99948 * 11 9 7 15 15 N 1.46502 * 109.47199 * 240.00209 * 2 1 3 16 16 C 1.34776 * 120.00138 * 84.99924 * 15 2 1 17 17 O 1.21286 * 119.99803 * 359.97438 * 16 15 2 18 18 C 1.50694 * 120.00227 * 180.02562 * 16 15 2 19 19 H 1.09005 * 109.47357 * 54.99796 * 18 16 15 20 20 C 1.53004 * 109.46735 * 295.00031 * 18 16 15 21 21 O 1.42897 * 109.47308 * 175.00157 * 18 16 15 22 22 C 1.35958 * 116.99852 * 204.56980 * 21 18 16 23 23 C 1.38656 * 120.06505 * 354.48139 * 22 21 18 24 24 C 1.38176 * 119.97043 * 179.72192 * 23 22 21 25 25 C 1.38264 * 120.09683 * 0.54441 * 24 23 22 26 26 C 1.38257 * 120.12328 * 359.73188 * 25 24 23 27 27 C 1.38331 * 120.02942 * 359.97438 * 26 25 24 28 28 F 1.35100 * 120.04724 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46598 * 300.00244 * 1 2 3 31 31 H 1.08996 * 109.46629 * 59.99489 * 1 2 3 32 32 H 1.09004 * 109.47369 * 294.99936 * 4 2 1 33 33 H 1.08994 * 109.47516 * 54.99998 * 4 2 1 34 34 H 1.09004 * 109.46734 * 94.02585 * 6 5 4 35 35 H 1.08995 * 109.47181 * 214.01739 * 6 5 4 36 36 H 1.08993 * 109.47381 * 334.02195 * 6 5 4 37 37 H 0.97000 * 120.00470 * 180.02562 * 10 9 7 38 38 H 0.97003 * 120.00042 * 265.00385 * 15 2 1 39 39 H 1.08996 * 109.47188 * 299.99948 * 20 18 16 40 40 H 1.08994 * 109.47231 * 60.00191 * 20 18 16 41 41 H 1.09005 * 109.46945 * 179.97438 * 20 18 16 42 42 H 1.08004 * 120.01528 * 359.97159 * 23 22 21 43 43 H 1.08006 * 119.95606 * 180.27383 * 24 23 22 44 44 H 1.08001 * 119.94310 * 179.74235 * 25 24 23 45 45 H 1.07998 * 119.98534 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1258 -1.9920 0.5612 7 6 4.2799 0.1648 1.7240 8 1 3.8729 0.8280 2.4730 9 6 5.5936 0.3170 1.3022 10 7 5.9851 -0.2148 0.1639 11 14 6.8057 1.2770 2.3504 12 1 6.1216 1.7689 3.5732 13 1 7.9345 0.3929 2.7371 14 1 7.3249 2.4319 1.5746 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8582 1.1585 -2.4117 18 6 2.6489 -0.7287 -3.5877 19 1 2.0275 -1.6030 -3.7813 20 6 4.0968 -1.1710 -3.3664 21 8 2.5872 0.1569 -4.7075 22 6 2.4988 -0.4111 -5.9395 23 6 2.5869 -1.7880 -6.0776 24 6 2.4910 -2.3637 -7.3300 25 6 2.3184 -1.5680 -8.4475 26 6 2.2357 -0.1943 -8.3151 27 6 2.3250 0.3871 -7.0630 28 9 2.2437 1.7294 -6.9331 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 1.7516 -0.1584 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 4.3450 -1.7673 -0.4826 35 1 5.0518 -2.2333 1.0830 36 1 3.4463 -2.8425 0.6149 37 1 6.9032 -0.1088 -0.1307 38 1 2.2491 -1.6318 -1.1527 39 1 4.7182 -0.2967 -3.1729 40 1 4.1439 -1.8465 -2.5124 41 1 4.4597 -1.6853 -4.2564 42 1 2.7265 -2.4105 -5.2061 43 1 2.5553 -3.4366 -7.4368 44 1 2.2479 -2.0203 -9.4257 45 1 2.1013 0.4252 -9.1895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:38 Heat of formation + Delta-G solvation = -66.160920 kcal Electronic energy + Delta-G solvation = -28372.301197 eV Core-core repulsion = 24305.858778 eV Total energy + Delta-G solvation = -4066.442419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.73974 -40.48412 -39.10976 -37.47662 -36.24638 -34.04366 -32.47915 -31.04462 -30.81426 -30.05640 -29.40522 -26.26290 -25.66598 -24.68496 -23.23169 -22.55916 -21.64575 -20.35910 -19.82221 -18.60362 -17.36562 -16.99614 -16.79569 -16.15938 -15.96324 -15.59578 -15.25977 -14.91135 -14.80618 -14.48353 -14.21173 -13.99252 -13.61904 -13.30227 -13.16128 -13.00287 -12.83331 -12.39904 -12.34411 -12.13501 -11.98874 -11.89356 -11.61635 -11.51048 -11.22888 -11.10092 -10.93558 -10.89310 -10.77033 -10.58905 -10.24901 -9.98957 -9.86891 -9.29552 -9.08176 -8.62572 -8.41497 -8.27881 -6.80548 -5.78207 -3.19128 0.94964 1.10449 2.72579 3.07734 3.37586 3.41551 3.46404 3.47652 3.84245 4.16811 4.49654 4.56088 4.62697 4.74141 4.99431 5.03025 5.06438 5.09072 5.29686 5.32640 5.42292 5.64859 5.77078 5.77755 5.82706 5.87587 5.89883 5.96082 6.00028 6.06329 6.18309 6.20332 6.44044 6.46177 6.49783 6.50594 6.56491 6.84403 7.08795 7.20367 7.25529 7.53939 7.79545 8.01995 8.33941 8.72989 9.18117 9.81966 10.29357 11.27860 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.003410 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.268976 B = 8210.071358 C = 8780.056527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.087 0.913 4 C 0.143 3.857 5 N -0.595 5.595 6 C 0.156 3.844 7 C -0.258 4.258 8 H 0.069 0.931 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.899 3.101 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.693 5.693 16 C 0.523 3.477 17 O -0.527 6.527 18 C 0.068 3.932 19 H 0.091 0.909 20 C -0.170 4.170 21 O -0.275 6.275 22 C 0.106 3.894 23 C -0.188 4.188 24 C -0.089 4.089 25 C -0.136 4.136 26 C -0.118 4.118 27 C 0.068 3.932 28 F -0.130 7.130 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.041 0.959 36 H -0.003 1.003 37 H 0.251 0.749 38 H 0.394 0.606 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 -8.834 -13.504 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.105 0.895 4 C 0.014 3.986 5 N -0.317 5.317 6 C 0.012 3.988 7 C -0.388 4.388 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.729 3.271 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.344 5.344 16 C 0.307 3.693 17 O -0.402 6.402 18 C 0.009 3.991 19 H 0.109 0.891 20 C -0.228 4.228 21 O -0.187 6.187 22 C 0.059 3.941 23 C -0.206 4.206 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.136 4.136 27 C 0.048 3.952 28 F -0.109 7.109 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.061 0.939 38 H 0.228 0.772 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.159 0.841 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.833 -7.718 -13.504 17.888 hybrid contribution 0.995 0.163 0.474 1.114 sum -7.838 -7.555 -13.030 16.980 Atomic orbital electron populations 1.22162 0.96806 1.01110 1.01827 1.21911 0.91681 0.99285 0.85968 0.89495 1.21207 0.85790 0.97247 0.94324 1.43918 0.99064 1.20649 1.68079 1.20883 0.94802 0.85281 0.97883 1.19180 0.93386 1.10439 1.15768 0.91363 1.24888 0.98802 0.99452 0.96030 1.70059 1.16732 1.48660 1.18796 0.86275 0.81449 0.79281 0.80062 1.20372 1.21705 1.21839 1.45624 1.66345 1.13567 1.08833 1.19736 0.78164 0.87367 0.84059 1.90705 1.49351 1.15421 1.84749 1.22359 0.99554 0.92282 0.84950 0.89134 1.22308 0.93467 1.03998 1.02984 1.86312 1.87164 1.34295 1.10962 1.19165 0.97677 0.91957 0.85301 1.21291 1.06932 0.92742 0.99668 1.21010 0.97872 1.00269 0.91588 1.20895 1.02831 0.92486 0.99236 1.21013 1.01409 0.96083 0.95144 1.17049 1.08548 0.77421 0.92216 1.91528 1.93928 1.28817 1.96594 0.93156 0.91949 0.92960 0.92128 0.93952 0.94966 0.93984 0.98418 0.93940 0.77150 0.89806 0.89302 0.91617 0.84122 0.85070 0.85005 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.18 2.88 -67.93 -0.20 1.98 16 3 H 0.09 1.97 7.58 -51.93 -0.39 1.58 16 4 C 0.14 2.65 5.33 -4.04 -0.02 2.63 16 5 N -0.60 -13.67 2.78 -181.12 -0.50 -14.17 16 6 C 0.16 3.38 7.66 59.85 0.46 3.84 16 7 C -0.26 -6.83 9.63 -15.06 -0.15 -6.97 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 9 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 10 N -0.90 -24.85 10.98 55.49 0.61 -24.24 16 11 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 N -0.69 -12.15 4.37 -53.80 -0.23 -12.38 16 16 C 0.52 10.15 7.14 -10.99 -0.08 10.07 16 17 O -0.53 -12.58 16.17 -14.31 -0.23 -12.81 16 18 C 0.07 1.07 2.64 -27.88 -0.07 1.00 16 19 H 0.09 1.09 6.34 -51.93 -0.33 0.76 16 20 C -0.17 -2.61 9.12 37.16 0.34 -2.27 16 21 O -0.28 -4.91 9.21 -39.47 -0.36 -5.28 16 22 C 0.11 1.55 6.60 -39.18 -0.26 1.29 16 23 C -0.19 -2.08 8.23 -39.45 -0.32 -2.41 16 24 C -0.09 -0.79 10.04 -39.59 -0.40 -1.19 16 25 C -0.14 -1.17 10.04 -39.56 -0.40 -1.56 16 26 C -0.12 -1.23 10.02 -39.54 -0.40 -1.62 16 27 C 0.07 0.96 7.31 -39.30 -0.29 0.67 16 28 F -0.13 -2.14 17.11 2.25 0.04 -2.11 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 34 H 0.03 0.72 5.58 -51.93 -0.29 0.43 16 35 H 0.04 1.01 7.32 -51.93 -0.38 0.63 16 36 H 0.00 -0.05 7.85 -51.93 -0.41 -0.46 16 37 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.39 6.07 6.94 -40.82 -0.28 5.79 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.09 1.33 6.57 -51.93 -0.34 0.99 16 41 H 0.06 0.83 6.86 -51.93 -0.36 0.48 16 42 H 0.14 1.33 5.41 -52.48 -0.28 1.05 16 43 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -33.05 371.91 -8.02 -41.08 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.40 Total: 4.05 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.51 Total: 3.54 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.13 Total: -50.79 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.59 Total: -18.08 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.05 -8.02 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.085 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds