Wall clock time and date at job start Tue Mar 31 2020 13:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47302 * 2 1 4 4 C 1.52996 * 109.47350 * 240.00086 * 2 1 3 5 5 N 1.46499 * 109.47126 * 185.00165 * 4 2 1 6 6 C 1.46497 * 120.00118 * 269.99857 * 5 4 2 7 7 C 1.36937 * 119.99811 * 89.99966 * 5 4 2 8 8 H 1.07998 * 120.00598 * 24.55267 * 7 5 4 9 9 C 1.38817 * 119.99969 * 204.55048 * 7 5 4 10 10 N 1.31620 * 119.99960 * 14.22226 * 9 7 5 11 11 Si 1.86796 * 119.99939 * 194.22410 * 9 7 5 12 12 H 1.48500 * 109.47292 * 90.00295 * 11 9 7 13 13 H 1.48500 * 109.47201 * 209.99582 * 11 9 7 14 14 H 1.48494 * 109.47279 * 329.99744 * 11 9 7 15 15 N 1.46504 * 109.46572 * 119.99987 * 2 1 3 16 16 C 1.34770 * 119.99932 * 274.99632 * 15 2 1 17 17 O 1.21286 * 120.00288 * 0.02562 * 16 15 2 18 18 C 1.50706 * 119.99905 * 180.02562 * 16 15 2 19 19 H 1.09000 * 109.46862 * 305.00255 * 18 16 15 20 20 C 1.53001 * 109.47149 * 65.00398 * 18 16 15 21 21 O 1.42898 * 109.47196 * 185.00386 * 18 16 15 22 22 C 1.35955 * 117.00387 * 155.45866 * 21 18 16 23 23 C 1.38662 * 120.05944 * 5.25223 * 22 21 18 24 24 C 1.38182 * 119.97172 * 179.72496 * 23 22 21 25 25 C 1.38264 * 120.09011 * 0.55485 * 24 23 22 26 26 C 1.38255 * 120.12790 * 359.71850 * 25 24 23 27 27 C 1.38329 * 120.02857 * 0.02562 * 26 25 24 28 28 F 1.35110 * 120.04861 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.46657 * 60.00120 * 1 2 3 30 30 H 1.08995 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47476 * 300.00303 * 1 2 3 32 32 H 1.08999 * 109.47106 * 305.00080 * 4 2 1 33 33 H 1.08997 * 109.47330 * 65.00317 * 4 2 1 34 34 H 1.08998 * 109.47045 * 90.46069 * 6 5 4 35 35 H 1.08996 * 109.47144 * 210.46128 * 6 5 4 36 36 H 1.09002 * 109.47254 * 330.46192 * 6 5 4 37 37 H 0.96994 * 120.00165 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00012 * 95.00374 * 15 2 1 39 39 H 1.09000 * 109.46835 * 59.99596 * 20 18 16 40 40 H 1.08992 * 109.47495 * 179.97438 * 20 18 16 41 41 H 1.08999 * 109.46742 * 300.00258 * 20 18 16 42 42 H 1.08000 * 120.01795 * 359.97438 * 23 22 21 43 43 H 1.07990 * 119.95501 * 180.27666 * 24 23 22 44 44 H 1.08002 * 119.93561 * 179.74704 * 25 24 23 45 45 H 1.08007 * 119.98721 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3344 0.2341 -1.7611 7 6 4.0850 -1.9158 -0.6022 8 1 3.5469 -2.8502 -0.5406 9 6 5.3695 -1.8193 -0.0849 10 7 5.9184 -0.6370 0.0976 11 14 6.3191 -3.3674 0.3521 12 1 7.0964 -3.8214 -0.8290 13 1 7.2478 -3.0783 1.4742 14 1 5.3684 -4.4332 0.7585 15 7 2.0182 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8582 1.1584 2.4117 18 6 2.6497 -0.7286 3.5875 19 1 2.0289 -1.6034 3.7812 20 6 4.0978 -1.1699 3.3658 21 8 2.5878 0.1568 4.7074 22 6 2.5007 -0.4114 5.9395 23 6 2.5850 -1.7886 6.0768 24 6 2.5020 -2.3638 7.3304 25 6 2.3235 -1.5687 8.4474 26 6 2.2333 -0.1955 8.3146 27 6 2.3210 0.3861 7.0625 28 9 2.2334 1.7280 6.9323 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6055 -1.7197 -1.2951 33 1 1.7518 -0.1583 -2.1369 34 1 4.5469 0.9806 -0.9959 35 1 5.2701 -0.1938 -2.1209 36 1 3.8071 0.7044 -2.5910 37 1 6.8158 -0.5696 0.4594 38 1 2.2489 -1.6318 1.1527 39 1 4.7186 -0.2951 3.1720 40 1 4.4616 -1.6832 4.2557 41 1 4.1450 -1.8452 2.5115 42 1 2.7195 -2.4113 5.2046 43 1 2.5722 -3.4361 7.4375 44 1 2.2549 -2.0212 9.4257 45 1 2.0934 0.4234 9.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:41 Heat of formation + Delta-G solvation = -67.848635 kcal Electronic energy + Delta-G solvation = -28666.945189 eV Core-core repulsion = 24600.429585 eV Total energy + Delta-G solvation = -4066.515604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.69270 -40.38938 -39.00400 -37.40198 -36.19078 -33.98587 -32.41597 -31.06063 -30.75167 -29.93926 -29.31340 -26.22772 -25.65427 -24.57353 -23.15964 -22.49299 -21.68545 -20.30637 -19.64017 -18.52495 -17.31054 -16.97372 -16.68653 -16.02160 -15.89413 -15.59604 -15.18202 -14.93827 -14.77581 -14.41454 -14.08937 -13.96159 -13.68245 -13.17389 -13.03882 -12.91674 -12.82317 -12.31781 -12.22782 -12.10917 -11.91778 -11.84586 -11.52612 -11.43835 -11.37081 -11.11698 -10.86998 -10.83803 -10.75980 -10.46048 -10.29375 -10.10255 -9.90941 -9.19868 -9.01541 -8.63148 -8.32324 -8.21190 -6.82228 -5.82607 -3.29552 1.00650 1.16500 2.82254 3.18711 3.24857 3.32744 3.36399 3.47492 3.96874 4.23543 4.37300 4.62189 4.70835 4.84227 5.08396 5.13557 5.14426 5.22708 5.27650 5.37739 5.45460 5.63606 5.84187 5.85608 5.90284 5.95649 5.97906 6.06346 6.07998 6.14018 6.22093 6.24704 6.41851 6.49902 6.57327 6.66555 6.71422 6.86205 7.20217 7.29408 7.34056 7.63807 7.70259 8.21356 8.29858 8.86816 9.11978 9.76322 10.28676 11.21423 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.004213 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.291777 B = 6645.004621 C = 7888.583748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.596 5.596 6 C 0.162 3.838 7 C -0.262 4.262 8 H 0.065 0.935 9 C 0.014 3.986 10 N -0.890 5.890 11 Si 0.887 3.113 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.279 1.279 15 N -0.681 5.681 16 C 0.524 3.476 17 O -0.538 6.538 18 C 0.069 3.931 19 H 0.090 0.910 20 C -0.170 4.170 21 O -0.276 6.276 22 C 0.108 3.892 23 C -0.188 4.188 24 C -0.089 4.089 25 C -0.137 4.137 26 C -0.118 4.118 27 C 0.066 3.934 28 F -0.131 7.131 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.046 0.954 36 H -0.003 1.003 37 H 0.253 0.747 38 H 0.404 0.596 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -4.741 11.020 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.318 5.318 6 C 0.017 3.983 7 C -0.392 4.392 8 H 0.083 0.917 9 C -0.187 4.187 10 N -0.533 5.533 11 Si 0.717 3.283 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.204 1.204 15 N -0.332 5.332 16 C 0.307 3.693 17 O -0.415 6.415 18 C 0.010 3.990 19 H 0.108 0.892 20 C -0.228 4.228 21 O -0.188 6.188 22 C 0.060 3.940 23 C -0.207 4.207 24 C -0.107 4.107 25 C -0.155 4.155 26 C -0.137 4.137 27 C 0.046 3.954 28 F -0.109 7.109 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.015 0.985 37 H 0.064 0.936 38 H 0.240 0.760 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.159 0.841 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.232 -3.577 11.002 14.198 hybrid contribution 0.920 -1.199 0.257 1.533 sum -7.312 -4.776 11.259 14.249 Atomic orbital electron populations 1.22170 0.96868 1.01271 1.01658 1.21840 0.91754 0.98477 0.86604 0.90440 1.21197 0.86054 0.97874 0.93516 1.43854 0.98852 1.22626 1.66447 1.20767 0.93394 0.90737 0.93401 1.19052 0.98702 0.88776 1.32675 0.91746 1.24973 0.98943 0.95757 0.98992 1.70067 1.15268 1.20998 1.46947 0.86562 0.80498 0.83258 0.78016 1.21464 1.21630 1.20401 1.45540 1.65268 1.14279 1.08069 1.19711 0.78095 0.87262 0.84196 1.90678 1.50230 1.15576 1.85007 1.22356 0.99625 0.92213 0.84810 0.89205 1.22302 0.93267 1.04043 1.03167 1.86296 1.87107 1.34464 1.10974 1.19164 0.97498 0.91923 0.85381 1.21322 1.06826 0.92821 0.99688 1.21011 0.97835 1.00275 0.91584 1.20883 1.02950 0.92505 0.99207 1.20998 1.01510 0.96060 0.95113 1.17038 1.08683 0.77410 0.92234 1.91523 1.93927 1.28891 1.96600 0.92159 0.92977 0.92945 0.93297 0.92906 0.95699 0.93552 0.98485 0.93634 0.76029 0.90106 0.92002 0.88617 0.84070 0.85102 0.85047 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.48 37.16 0.35 -2.05 16 2 C 0.12 2.21 2.88 -67.93 -0.20 2.02 16 3 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.61 5.37 -4.04 -0.02 2.59 16 5 N -0.60 -13.47 2.81 -181.13 -0.51 -13.97 16 6 C 0.16 3.80 9.03 59.85 0.54 4.34 16 7 C -0.26 -6.23 7.97 -15.06 -0.12 -6.35 16 8 H 0.06 1.48 7.86 -52.49 -0.41 1.07 16 9 C 0.01 0.33 4.90 -17.43 -0.09 0.25 16 10 N -0.89 -23.68 10.91 55.49 0.61 -23.07 16 11 Si 0.89 19.64 29.58 -169.99 -5.03 14.62 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 15 N -0.68 -12.67 4.45 -53.80 -0.24 -12.91 16 16 C 0.52 10.60 7.14 -10.99 -0.08 10.52 16 17 O -0.54 -12.97 16.17 -14.31 -0.23 -13.20 16 18 C 0.07 1.19 2.64 -27.88 -0.07 1.12 16 19 H 0.09 1.23 6.33 -51.93 -0.33 0.90 16 20 C -0.17 -2.97 9.12 37.16 0.34 -2.63 16 21 O -0.28 -5.18 9.21 -39.46 -0.36 -5.55 16 22 C 0.11 1.67 6.60 -39.18 -0.26 1.41 16 23 C -0.19 -2.32 8.23 -39.45 -0.32 -2.64 16 24 C -0.09 -0.88 10.04 -39.59 -0.40 -1.27 16 25 C -0.14 -1.28 10.04 -39.57 -0.40 -1.68 16 26 C -0.12 -1.31 10.02 -39.54 -0.40 -1.70 16 27 C 0.07 0.98 7.31 -39.30 -0.29 0.70 16 28 F -0.13 -2.21 17.11 2.25 0.04 -2.17 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.84 8.04 -51.93 -0.42 0.42 16 33 H 0.05 0.90 7.89 -51.93 -0.41 0.49 16 34 H 0.02 0.65 7.58 -51.93 -0.39 0.25 16 35 H 0.05 1.17 7.17 -51.93 -0.37 0.79 16 36 H 0.00 -0.07 7.89 -51.93 -0.41 -0.48 16 37 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 38 H 0.40 7.15 7.18 -40.82 -0.29 6.85 16 39 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 40 H 0.06 0.92 6.88 -51.93 -0.36 0.56 16 41 H 0.10 1.75 7.80 -51.93 -0.40 1.34 16 42 H 0.14 1.56 5.42 -52.49 -0.28 1.28 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -30.68 374.99 -8.05 -38.73 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.57 Total: 7.27 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.40 Total: 4.61 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.14 Total: -49.96 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.59 Total: -18.75 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.68 -8.05 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.121 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds