Wall clock time and date at job start Tue Mar 31 2020 13:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46903 * 111.00066 * 58.94896 * 12 2 1 14 14 C 1.38557 * 110.99581 * 295.00082 * 12 2 1 15 15 N 1.32863 * 120.51284 * 359.71397 * 14 12 2 16 16 C 1.32519 * 120.55142 * 179.76192 * 15 14 12 17 17 C 1.48416 * 119.14607 * 180.26092 * 16 15 14 18 18 C 1.39733 * 120.90481 * 359.97438 * 17 16 15 19 19 C 1.38057 * 119.01449 * 179.77383 * 18 17 16 20 20 N 1.31880 * 120.88573 * 0.50910 * 19 18 17 21 21 C 1.31885 * 122.00460 * 359.73745 * 20 19 18 22 22 C 1.38053 * 120.88172 * 359.97438 * 21 20 19 23 23 N 1.32503 * 121.70320 * 0.53522 * 16 15 14 24 24 C 1.32533 * 120.96088 * 359.72612 * 23 16 15 25 25 C 1.38064 * 119.14178 * 0.02562 * 24 23 16 26 26 C 1.51080 * 109.93834 * 179.97438 * 25 24 23 27 27 C 1.54416 * 105.13410 * 342.97787 * 26 25 24 28 28 C 1.51214 * 131.11727 * 180.02562 * 24 23 16 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46799 * 60.00373 * 13 12 2 34 34 H 1.08995 * 109.46967 * 180.02562 * 13 12 2 35 35 H 1.09002 * 109.46933 * 300.00619 * 13 12 2 36 36 H 1.07997 * 120.49327 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.55996 * 180.22417 * 19 18 17 38 38 H 1.07995 * 119.55665 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.49172 * 180.02562 * 22 21 20 40 40 H 1.09001 * 110.31140 * 101.89607 * 26 25 24 41 41 H 1.09003 * 110.30511 * 224.06445 * 26 25 24 42 42 H 1.08993 * 110.82558 * 267.86759 * 27 26 25 43 43 H 1.08999 * 110.98996 * 144.39219 * 27 26 25 44 44 H 1.09006 * 110.29966 * 316.00211 * 28 24 23 45 45 H 1.08993 * 110.30668 * 78.14967 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6698 -0.0024 2.3488 15 7 0.9846 1.1333 2.2715 16 6 0.6455 1.7915 3.3706 17 6 -0.1250 3.0541 3.2482 18 6 -0.4928 3.5519 1.9954 19 6 -1.2133 4.7275 1.9272 20 7 -1.5450 5.3828 3.0226 21 6 -1.2132 4.9501 4.2234 22 6 -0.4978 3.7801 4.3824 23 7 0.9810 1.3544 4.5756 24 6 1.6687 0.2315 4.7264 25 6 2.0373 -0.4869 3.6065 26 6 2.8076 -1.7203 4.0160 27 6 3.2450 -1.4571 5.4734 28 6 2.1660 -0.4705 5.9700 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1613 -3.4844 33 1 1.8762 -2.6151 0.3647 34 1 1.9053 -2.5656 2.1440 35 1 0.4384 -2.0742 1.2639 36 1 -0.2210 3.0226 1.0941 37 1 -1.5054 5.1183 0.9636 38 1 -1.5059 5.5181 5.0941 39 1 -0.2298 3.4313 5.3688 40 1 2.1667 -2.6005 3.9664 41 1 3.6808 -1.8505 3.3766 42 1 4.2331 -0.9982 5.5045 43 1 3.2280 -2.3767 6.0583 44 1 2.6020 0.2499 6.6622 45 1 1.3510 -1.0120 6.4502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301427770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:34 Heat of formation + Delta-G solvation = 106.979081 kcal Electronic energy + Delta-G solvation = -27670.415052 eV Core-core repulsion = 24074.542523 eV Total energy + Delta-G solvation = -3595.872529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30878 -39.77861 -37.69835 -36.78460 -33.37346 -32.63527 -32.06501 -31.00680 -29.92175 -28.38714 -27.91101 -25.85654 -25.27073 -24.33248 -23.34213 -22.39526 -21.24549 -20.95323 -19.64349 -17.69511 -17.23907 -16.18405 -15.94680 -15.61557 -15.44278 -15.32763 -14.68048 -14.58758 -14.16573 -13.87592 -13.66794 -13.57345 -13.48067 -13.36065 -13.18500 -12.71399 -12.35913 -12.20055 -11.66452 -11.50228 -11.43408 -11.32323 -11.12045 -10.99886 -10.89450 -10.75491 -10.55268 -10.12307 -10.09380 -9.96563 -9.88167 -9.42553 -9.08987 -9.00212 -8.73691 -8.59778 -8.40081 -7.56763 -6.09272 -4.15809 0.59879 1.30531 1.50431 1.87719 3.26299 3.31697 3.33171 3.67732 3.79285 4.03332 4.25364 4.30235 4.46546 4.56122 4.58180 4.88364 4.90352 5.08110 5.09291 5.22922 5.26124 5.28111 5.34893 5.53848 5.59955 5.70436 5.75364 5.80768 5.82594 5.89447 5.98729 5.99857 6.05950 6.09028 6.13840 6.39054 6.49801 6.53529 6.75205 6.81649 6.93373 7.10587 7.16478 7.40207 7.63475 7.67038 7.90703 8.06245 8.18676 8.36846 8.52155 8.87791 9.48955 10.97084 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.005163 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.133035 B = 5421.501813 C = 8176.243858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.220 3.780 3 H 0.053 0.947 4 C -0.517 4.517 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.465 5.465 13 C 0.033 3.967 14 C 0.387 3.613 15 N -0.518 5.518 16 C 0.364 3.636 17 C 0.011 3.989 18 C -0.120 4.120 19 C 0.090 3.910 20 N -0.481 5.481 21 C 0.083 3.917 22 C -0.131 4.131 23 N -0.536 5.536 24 C 0.169 3.831 25 C -0.230 4.230 26 C -0.064 4.064 27 C -0.118 4.118 28 C -0.066 4.066 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.020 0.980 32 H 0.263 0.737 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -1.278 15.683 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.116 3.884 3 H 0.071 0.929 4 C -0.555 4.555 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.179 5.179 13 C -0.113 4.113 14 C 0.146 3.854 15 N -0.238 5.238 16 C 0.097 3.903 17 C 0.001 3.999 18 C -0.142 4.142 19 C -0.066 4.066 20 N -0.191 5.191 21 C -0.074 4.074 22 C -0.153 4.153 23 N -0.253 5.253 24 C 0.025 3.975 25 C -0.239 4.239 26 C -0.102 4.102 27 C -0.156 4.156 28 C -0.104 4.104 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.173 0.827 39 H 0.162 0.838 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.877 0.346 15.233 15.262 hybrid contribution 0.607 -1.893 -0.909 2.186 sum -0.270 -1.548 14.324 14.409 Atomic orbital electron populations 1.22418 0.99146 0.98876 1.02216 1.19357 0.91136 0.94801 0.83087 0.92873 1.21051 1.31751 1.12956 0.89790 0.92010 1.24874 0.94975 0.95021 0.98903 1.69884 1.36214 1.22576 1.23707 0.86567 0.79226 0.79589 0.82060 1.20295 1.21240 1.20221 1.59175 1.52888 1.03846 1.01989 1.22470 0.98504 0.87243 1.03050 1.20084 0.85653 0.89274 0.90403 1.68716 1.13822 1.09788 1.31434 1.20795 0.92977 0.92921 0.83580 1.18400 0.96226 0.91312 0.93967 1.22542 0.96293 0.96559 0.98777 1.22754 0.94898 0.91776 0.97189 1.67564 1.19410 1.33138 0.98960 1.22645 0.95614 0.93945 0.95198 1.22255 0.97940 0.95408 0.99662 1.67405 1.16515 1.14909 1.26509 1.21787 0.90743 0.89031 0.95948 1.21613 1.06658 1.01845 0.93782 1.20841 0.99284 0.94250 0.95832 1.22352 0.98408 0.99097 0.95761 1.20963 0.98645 0.97232 0.93599 0.89164 0.94606 0.96067 0.92751 0.89059 0.92072 0.94455 0.82655 0.82231 0.82676 0.83772 0.90233 0.89890 0.90674 0.89987 0.89654 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.22 37.16 0.31 -3.70 16 2 C 0.22 5.42 1.97 -68.86 -0.14 5.28 16 3 H 0.05 1.49 7.76 -51.93 -0.40 1.09 16 4 C -0.52 -13.56 7.94 -34.44 -0.27 -13.83 16 5 H 0.06 1.59 6.75 -52.48 -0.35 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.46 -9.80 4.78 -174.59 -0.83 -10.63 16 13 C 0.03 0.60 8.62 60.07 0.52 1.11 16 14 C 0.39 7.69 6.01 -154.85 -0.93 6.76 16 15 N -0.52 -10.65 5.78 -10.37 -0.06 -10.71 16 16 C 0.36 6.79 7.57 -157.04 -1.19 5.60 16 17 C 0.01 0.19 5.91 -104.59 -0.62 -0.43 16 18 C -0.12 -1.99 9.64 -39.09 -0.38 -2.37 16 19 C 0.09 1.33 11.17 -17.60 -0.20 1.13 16 20 N -0.48 -7.06 10.34 -13.32 -0.14 -7.20 16 21 C 0.08 1.07 11.17 -17.60 -0.20 0.87 16 22 C -0.13 -1.84 9.64 -39.09 -0.38 -2.22 16 23 N -0.54 -9.17 9.55 -7.32 -0.07 -9.24 16 24 C 0.17 2.60 7.36 -82.10 -0.60 2.00 16 25 C -0.23 -3.77 5.77 -103.96 -0.60 -4.37 16 26 C -0.06 -0.78 5.06 -26.95 -0.14 -0.91 16 27 C -0.12 -1.08 7.09 -25.25 -0.18 -1.26 16 28 C -0.07 -0.70 6.77 -26.89 -0.18 -0.88 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 30 H 0.04 0.82 5.68 -51.93 -0.29 0.52 16 31 H 0.02 0.48 6.38 -51.93 -0.33 0.15 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.09 1.70 6.53 -51.93 -0.34 1.36 16 34 H 0.06 0.90 4.79 -51.93 -0.25 0.65 16 35 H 0.04 0.69 6.28 -51.93 -0.33 0.36 16 36 H 0.16 2.85 7.61 -52.49 -0.40 2.45 16 37 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 38 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.14 1.83 7.61 -52.48 -0.40 1.43 16 40 H 0.08 0.87 7.08 -51.93 -0.37 0.50 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -30.15 355.52 -11.28 -41.43 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.87 Total: 4.75 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -5.27 Total: -5.59 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.47 Total: -61.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.15 -11.28 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301427770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.412 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds