Wall clock time and date at job start Tue Mar 31 2020 14:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99742 * 2 1 4 4 H 1.48497 * 109.46939 * 264.98592 * 3 2 1 5 5 H 1.48502 * 109.47266 * 24.98852 * 3 2 1 6 6 H 1.48501 * 109.46952 * 144.98757 * 3 2 1 7 7 C 1.38803 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00466 * 192.63976 * 7 2 1 9 9 N 1.36944 * 120.00014 * 12.64357 * 7 2 1 10 10 C 1.47161 * 120.98027 * 208.77762 * 9 7 2 11 11 C 1.52881 * 108.60199 * 230.49643 * 10 9 7 12 12 O 1.42963 * 109.30043 * 307.93522 * 11 10 9 13 13 C 1.42955 * 114.16588 * 62.44842 * 12 11 10 14 14 H 1.08996 * 109.55492 * 57.37240 * 13 12 11 15 15 C 1.53001 * 109.50951 * 177.49877 * 13 12 11 16 16 N 1.46503 * 109.47173 * 299.74526 * 15 13 12 17 17 C 1.34774 * 120.00090 * 179.97438 * 16 15 13 18 18 O 1.21284 * 119.99998 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99765 * 179.97438 * 17 16 15 20 20 C 1.54057 * 111.89845 * 298.98409 * 19 17 16 21 21 C 1.54893 * 104.09230 * 262.44951 * 20 19 17 22 22 C 1.54798 * 102.73847 * 321.33163 * 21 20 19 23 23 C 1.54304 * 104.52098 * 37.60486 * 22 21 20 24 24 H 1.09002 * 110.58598 * 98.82871 * 23 22 21 25 25 O 1.43823 * 109.38849 * 222.46706 * 23 22 21 26 26 C 1.44305 * 107.22150 * 140.68382 * 25 23 22 27 27 C 1.54606 * 111.94270 * 61.80976 * 19 17 16 28 28 C 1.47149 * 120.98527 * 29.04866 * 9 7 2 29 29 H 0.97004 * 120.00304 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.67792 * 350.27422 * 10 9 7 31 31 H 1.08997 * 109.68449 * 110.82890 * 10 9 7 32 32 H 1.09003 * 109.57698 * 187.91926 * 11 10 9 33 33 H 1.09007 * 109.40948 * 67.84540 * 11 10 9 34 34 H 1.08996 * 109.47365 * 59.74677 * 15 13 12 35 35 H 1.09000 * 109.47241 * 179.75108 * 15 13 12 36 36 H 0.97001 * 119.99625 * 0.02562 * 16 15 13 37 37 H 1.09008 * 110.49996 * 21.10401 * 20 19 17 38 38 H 1.09004 * 110.50357 * 143.65802 * 20 19 17 39 39 H 1.09003 * 110.75459 * 79.63744 * 21 20 19 40 40 H 1.08996 * 110.75923 * 202.83057 * 21 20 19 41 41 H 1.08997 * 110.43162 * 156.37346 * 22 21 20 42 42 H 1.09008 * 110.41980 * 278.72818 * 22 21 20 43 43 H 1.08996 * 110.61158 * 78.57178 * 26 25 23 44 44 H 1.08996 * 110.61871 * 201.41020 * 26 25 23 45 45 H 1.09000 * 110.91415 * 217.84427 * 27 19 17 46 46 H 1.09006 * 110.90713 * 341.45616 * 27 19 17 47 47 H 1.08988 * 109.68612 * 249.17203 * 28 9 7 48 48 H 1.09001 * 109.67862 * 9.72813 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6036 1.9853 -1.3947 5 1 1.3986 2.6810 0.5914 6 1 3.4908 1.4731 0.8033 7 6 2.0103 -1.2021 0.0005 8 1 3.0706 -1.2134 0.2052 9 7 1.3505 -2.3738 -0.2585 10 6 1.8165 -3.6477 0.3121 11 6 1.9239 -4.6762 -0.8139 12 8 0.6908 -4.7167 -1.5361 13 6 0.3496 -3.4874 -2.1810 14 1 1.1507 -3.1974 -2.8608 15 6 -0.9494 -3.6672 -2.9692 16 7 -0.7655 -4.7093 -3.9825 17 6 -1.7839 -5.0410 -4.8005 18 8 -2.8525 -4.4765 -4.6982 19 6 -1.5945 -6.1125 -5.8431 20 6 -0.4904 -5.7436 -6.8522 21 6 -1.2637 -5.1598 -8.0607 22 6 -2.5113 -6.0726 -8.1408 23 6 -2.8812 -6.3523 -6.6691 24 1 -3.6894 -5.6962 -6.3457 25 8 -3.2257 -7.7405 -6.5189 26 6 -2.6743 -8.1839 -5.2612 27 6 -1.2631 -7.4831 -5.2093 28 6 0.1581 -2.3971 -1.1205 29 1 -0.4851 0.8400 -0.0004 30 1 2.7937 -3.5073 0.7741 31 1 1.1039 -3.9980 1.0588 32 1 2.1312 -5.6595 -0.3918 33 1 2.7317 -4.3918 -1.4884 34 1 -1.7497 -3.9589 -2.2892 35 1 -1.2113 -2.7284 -3.4571 36 1 0.0890 -5.1610 -4.0640 37 1 0.1787 -4.9943 -6.4289 38 1 0.0694 -6.6312 -7.1470 39 1 -1.5529 -4.1260 -7.8713 40 1 -0.6692 -5.2324 -8.9713 41 1 -3.3277 -5.5576 -8.6470 42 1 -2.2703 -7.0017 -8.6575 43 1 -3.3002 -7.8564 -4.4311 44 1 -2.5629 -9.2681 -5.2518 45 1 -0.5308 -8.0227 -5.8099 46 1 -0.9112 -7.3630 -4.1846 47 1 -0.7243 -2.6194 -0.5206 48 1 0.0377 -1.4291 -1.6068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035443473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:56 Heat of formation + Delta-G solvation = -107.980967 kcal Electronic energy + Delta-G solvation = -28945.729504 eV Core-core repulsion = 25000.933937 eV Total energy + Delta-G solvation = -3944.795567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.13693 -38.94276 -38.18630 -35.64397 -34.89461 -34.36649 -32.40544 -31.36071 -30.75863 -28.09469 -27.76135 -27.22140 -25.49600 -23.36155 -22.89324 -22.18939 -21.49129 -20.87351 -19.92671 -19.16796 -17.72035 -16.96341 -16.39490 -16.09175 -15.97209 -15.50897 -15.21963 -14.99207 -14.75608 -14.40962 -14.29478 -14.11548 -13.92204 -13.68375 -13.28794 -13.00613 -12.90148 -12.67617 -12.41538 -12.21013 -11.76160 -11.63228 -11.60101 -11.30632 -11.16929 -11.09581 -11.08381 -10.90400 -10.78192 -10.75809 -10.46080 -10.30009 -10.12529 -9.86239 -9.71933 -9.61377 -9.12140 -8.92411 -8.61489 -6.77671 -5.89064 -3.37152 2.61800 3.15374 3.31128 3.37489 3.38979 3.54321 4.11519 4.17313 4.27844 4.38770 4.50200 4.67425 4.78894 4.87623 4.94532 5.08914 5.14663 5.26577 5.31114 5.32212 5.39946 5.48543 5.50135 5.56000 5.59094 5.60580 5.66016 5.72244 5.80501 5.81623 5.87893 5.90797 5.96102 6.06266 6.08965 6.19455 6.30920 6.44741 6.59664 6.73093 6.73474 7.01730 7.43647 7.57875 7.65768 7.77597 8.25843 8.30060 9.06346 9.67902 10.25905 11.18850 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.002926 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.942252 B = 9567.661300 C =10173.064749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.051 3.949 12 O -0.391 6.391 13 C 0.055 3.945 14 H 0.055 0.945 15 C 0.132 3.868 16 N -0.715 5.715 17 C 0.529 3.471 18 O -0.539 6.539 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.124 4.124 22 C -0.123 4.123 23 C 0.090 3.910 24 H 0.099 0.901 25 O -0.372 6.372 26 C 0.047 3.953 27 C -0.142 4.142 28 C 0.154 3.846 29 H 0.257 0.743 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.402 0.598 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.032 0.968 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -14.969 -13.730 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.318 5.318 10 C -0.017 4.017 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.073 0.927 15 C 0.008 3.992 16 N -0.365 5.365 17 C 0.314 3.686 18 O -0.416 6.416 19 C -0.122 4.122 20 C -0.147 4.147 21 C -0.162 4.162 22 C -0.161 4.161 23 C 0.032 3.968 24 H 0.116 0.884 25 O -0.291 6.291 26 C -0.029 4.029 27 C -0.179 4.179 28 C 0.027 3.973 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.050 0.950 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.252 -14.657 -13.758 20.141 hybrid contribution 1.184 1.053 0.375 1.629 sum -0.068 -13.604 -13.383 19.083 Atomic orbital electron populations 1.69976 1.05249 1.25844 1.53566 1.25150 0.95447 0.98531 1.00270 0.86237 0.78970 0.83242 0.77857 1.21258 1.21533 1.20424 1.19169 0.91347 0.83845 1.44424 0.91460 1.44000 1.31699 1.02603 1.53503 1.21524 0.98678 0.87649 0.93895 1.22932 0.85780 0.99520 0.94529 1.87767 1.40678 1.33863 1.68692 1.23161 0.94733 0.87338 0.95242 0.92672 1.21454 0.97763 0.90898 0.89056 1.45935 1.15080 1.40276 1.35252 1.19960 0.84016 0.83123 0.81487 1.90695 1.26119 1.53940 1.70851 1.22597 0.98498 0.95385 0.95701 1.22471 0.95910 1.01697 0.94578 1.22522 0.96070 0.99548 0.98056 1.22522 0.98088 1.00299 0.95165 1.23408 0.94970 0.83670 0.94790 0.88382 1.88828 1.77255 1.24653 1.38353 1.24014 0.92167 0.99730 0.87028 1.23738 0.98598 0.93282 1.02318 1.21299 0.89343 0.96527 0.90112 0.93324 0.91974 0.95574 0.89991 0.93933 0.90689 0.89939 0.76360 0.90774 0.90014 0.90973 0.90694 0.90817 0.90305 0.91879 0.88769 0.89215 0.89379 0.95029 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 11.08 55.49 0.62 -24.96 16 2 C 0.01 0.14 5.03 -17.43 -0.09 0.05 16 3 Si 0.91 21.14 29.57 -169.99 -5.03 16.11 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.89 9.64 -15.06 -0.15 -7.04 16 8 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 9 N -0.59 -14.55 3.05 -172.08 -0.52 -15.07 16 10 C 0.11 2.21 6.71 -3.74 -0.03 2.18 16 11 C 0.05 0.84 6.97 37.10 0.26 1.10 16 12 O -0.39 -6.95 10.14 -35.23 -0.36 -7.30 16 13 C 0.05 1.00 2.86 -26.58 -0.08 0.92 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.13 2.18 5.37 -4.04 -0.02 2.16 16 16 N -0.71 -9.80 5.03 -60.29 -0.30 -10.10 16 17 C 0.53 7.54 6.53 -10.99 -0.07 7.47 16 18 O -0.54 -9.73 15.47 5.55 0.09 -9.65 16 19 C -0.12 -1.29 0.69 -153.33 -0.11 -1.40 16 20 C -0.11 -0.96 5.95 -25.18 -0.15 -1.11 16 21 C -0.12 -1.08 6.90 -24.79 -0.17 -1.26 16 22 C -0.12 -1.17 6.55 -25.10 -0.16 -1.34 16 23 C 0.09 1.06 3.87 -25.12 -0.10 0.97 16 24 H 0.10 1.38 6.74 -51.93 -0.35 1.03 16 25 O -0.37 -4.53 11.09 -35.23 -0.39 -4.92 16 26 C 0.05 0.47 7.80 39.70 0.31 0.78 16 27 C -0.14 -1.29 6.47 -23.34 -0.15 -1.45 16 28 C 0.15 3.55 4.69 -3.53 -0.02 3.54 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.40 4.74 8.27 -40.82 -0.34 4.41 16 37 H 0.07 0.66 7.62 -51.92 -0.40 0.26 16 38 H 0.08 0.59 7.23 -51.93 -0.38 0.21 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.71 8.03 -51.92 -0.42 0.29 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.66 7.24 -51.93 -0.38 0.28 16 46 H 0.09 0.81 7.76 -51.93 -0.40 0.41 16 47 H 0.03 0.79 8.14 -51.94 -0.42 0.37 16 48 H 0.10 2.44 6.22 -51.93 -0.32 2.11 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -31.28 373.73 -9.00 -40.28 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.01 Total: 4.40 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -0.71 Total: 5.59 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.21 Total: -50.14 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.66 Total: -21.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.28 -9.00 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035443473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.702 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds