Wall clock time and date at job start Tue Mar 31 2020 14:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99610 * 2 1 4 4 C 1.53009 * 109.47196 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46795 * 64.99928 * 4 3 2 6 6 C 1.46503 * 119.99538 * 270.00095 * 5 4 3 7 7 C 1.50703 * 109.47074 * 270.00061 * 6 5 4 8 8 H 1.08004 * 119.99642 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99828 * 180.02562 * 7 6 5 10 10 N 1.31525 * 119.99520 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00306 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47116 * 89.99704 * 11 9 7 13 13 H 1.48501 * 109.47374 * 209.99992 * 11 9 7 14 14 H 1.48506 * 109.47020 * 330.00111 * 11 9 7 15 15 C 1.34771 * 120.00166 * 90.00546 * 5 4 3 16 16 O 1.21284 * 119.99925 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99884 * 359.97438 * 15 5 4 18 18 C 1.53004 * 109.47183 * 180.02562 * 17 15 5 19 19 H 1.09003 * 109.46864 * 54.99686 * 18 17 15 20 20 C 1.53007 * 109.46938 * 295.00195 * 18 17 15 21 21 C 1.50697 * 109.47259 * 175.00266 * 18 17 15 22 22 C 1.41379 * 128.00922 * 60.00110 * 21 18 17 23 23 C 1.50707 * 126.79830 * 0.03100 * 22 21 18 24 24 N 1.30174 * 106.39679 * 179.97438 * 22 21 18 25 25 O 1.20920 * 111.60455 * 359.72499 * 24 22 21 26 26 C 1.34038 * 111.56572 * 0.44904 * 25 24 22 27 27 C 1.50706 * 126.77824 * 179.82988 * 26 25 24 28 28 H 1.09001 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47339 * 300.00300 * 1 2 3 30 30 H 1.09002 * 109.46962 * 60.00591 * 1 2 3 31 31 H 1.08998 * 109.47864 * 59.99538 * 3 2 1 32 32 H 1.09008 * 109.47274 * 299.99480 * 3 2 1 33 33 H 1.08994 * 109.46660 * 304.99736 * 4 3 2 34 34 H 1.08996 * 109.46986 * 184.99682 * 4 3 2 35 35 H 1.08997 * 109.47256 * 30.00034 * 6 5 4 36 36 H 1.09000 * 109.47007 * 150.00482 * 6 5 4 37 37 H 0.96999 * 119.99397 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.47119 * 60.00624 * 17 15 5 39 39 H 1.08998 * 109.47416 * 299.99973 * 17 15 5 40 40 H 1.08999 * 109.46886 * 60.00211 * 20 18 17 41 41 H 1.08999 * 109.46908 * 179.97438 * 20 18 17 42 42 H 1.08992 * 109.47160 * 299.99895 * 20 18 17 43 43 H 1.09004 * 109.46771 * 90.00745 * 23 22 21 44 44 H 1.09000 * 109.46893 * 210.00089 * 23 22 21 45 45 H 1.08995 * 109.47344 * 330.00067 * 23 22 21 46 46 H 1.08999 * 109.47015 * 269.68862 * 27 26 25 47 47 H 1.09000 * 109.46646 * 29.68015 * 27 26 25 48 48 H 1.09000 * 109.47248 * 149.68732 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1063 -0.8925 -1.3402 7 6 5.5018 -1.2980 -0.9411 8 1 6.2203 -0.5459 -0.6504 9 6 5.8614 -2.6290 -0.9480 10 7 7.0795 -2.9828 -0.6002 11 14 4.6193 -3.9296 -1.4528 12 1 4.7061 -4.1548 -2.9180 13 1 4.9128 -5.1981 -0.7387 14 1 3.2512 -3.4697 -1.1029 15 6 4.2634 1.3330 -2.3200 16 8 4.6282 0.8190 -3.3562 17 6 4.1295 2.8312 -2.2282 18 6 4.5119 3.4606 -3.5694 19 1 3.9098 3.0182 -4.3631 20 6 5.9939 3.2029 -3.8495 21 6 4.2614 4.9456 -3.5170 22 6 4.8348 5.8949 -2.6401 23 6 5.8386 5.6250 -1.5489 24 7 4.3249 7.0483 -2.9629 25 8 3.5497 6.9499 -3.8856 26 6 3.4351 5.6802 -4.2996 27 6 2.5640 5.1712 -5.4191 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8901 33 1 3.8507 0.5687 0.8427 34 1 3.9783 2.1767 0.0902 35 1 3.3859 -1.3631 -0.6712 36 1 3.9140 -1.2122 -2.3643 37 1 7.3324 -3.9193 -0.6047 38 1 4.7910 3.2080 -1.4480 39 1 3.0986 3.0898 -1.9867 40 1 6.1750 2.1287 -3.8874 41 1 6.2662 3.6509 -4.8052 42 1 6.5959 3.6452 -3.0559 43 1 6.8471 5.7133 -1.9530 44 1 5.7046 6.3488 -0.7449 45 1 5.6900 4.6179 -1.1595 46 1 1.5868 4.8957 -5.0225 47 1 2.4442 5.9522 -6.1700 48 1 3.0307 4.2978 -5.8744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152741224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:06 Heat of formation + Delta-G solvation = -28.529262 kcal Electronic energy + Delta-G solvation = -28946.018278 eV Core-core repulsion = 25004.667995 eV Total energy + Delta-G solvation = -3941.350283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.98290 -39.55081 -37.74606 -36.51312 -34.95420 -33.84811 -32.71701 -32.28655 -29.90721 -28.90101 -28.57974 -27.68749 -26.81762 -26.05666 -23.91579 -22.75245 -22.18479 -20.54231 -20.15284 -18.37692 -17.69456 -17.03758 -16.92042 -16.62267 -16.25416 -15.66589 -15.27028 -15.21057 -14.59420 -14.30941 -14.22047 -13.96775 -13.63499 -13.38336 -13.22774 -13.16970 -12.97572 -12.83438 -12.63131 -12.49084 -12.31576 -12.08351 -11.92622 -11.78463 -11.55307 -11.41158 -11.21878 -11.10447 -10.98691 -10.75126 -10.48403 -10.38065 -10.06572 -9.86255 -9.57934 -9.48304 -9.18614 -8.91268 -8.51978 -7.68451 -6.03097 -4.00637 1.38567 2.14097 3.02881 3.30476 3.34881 3.40723 3.45031 3.76849 3.92273 4.12717 4.37466 4.46521 4.68429 4.75468 5.02422 5.05014 5.10428 5.15822 5.20347 5.25123 5.28375 5.31918 5.34688 5.37976 5.41795 5.43952 5.48829 5.53821 5.58107 5.63096 5.65445 5.71857 5.76469 5.86493 5.95912 6.05656 6.13832 6.17941 6.36389 6.66744 6.92889 7.06880 7.27131 7.38898 7.69943 8.21985 8.29050 8.52647 8.95534 9.01610 9.58432 11.10337 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003740 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.655842 B = 7484.691202 C = 8365.516495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.584 5.584 6 C 0.219 3.781 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.901 5.901 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.507 3.493 16 O -0.536 6.536 17 C -0.137 4.137 18 C 0.006 3.994 19 H 0.090 0.910 20 C -0.151 4.151 21 C -0.186 4.186 22 C 0.028 3.972 23 C -0.082 4.082 24 N -0.372 5.372 25 O 0.092 5.908 26 C -0.036 4.036 27 C -0.074 4.074 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 16.630 -2.666 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.035 4.035 4 C -0.013 4.013 5 N -0.315 5.315 6 C 0.099 3.901 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.539 5.539 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.187 1.187 15 C 0.294 3.706 16 O -0.414 6.414 17 C -0.177 4.177 18 C -0.014 4.014 19 H 0.108 0.892 20 C -0.208 4.208 21 C -0.190 4.190 22 C -0.131 4.131 23 C -0.139 4.139 24 N -0.078 5.078 25 O 0.028 5.972 26 C -0.099 4.099 27 C -0.131 4.131 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.187 17.250 -2.723 20.739 hybrid contribution -0.723 -1.172 -0.173 1.388 sum -11.910 16.078 -2.896 20.217 Atomic orbital electron populations 1.22709 0.81929 1.02572 0.99318 1.88063 1.18845 1.27210 1.95189 1.23139 0.95337 0.85300 0.99706 1.21540 0.91034 0.99285 0.89472 1.47847 1.64525 1.08928 1.10189 1.19675 0.97629 0.74979 0.97822 1.21361 0.96162 0.93491 1.45414 0.90914 1.24824 0.95115 0.98346 0.94669 1.69906 1.18176 1.17200 1.48661 0.86881 0.82539 0.81378 0.79188 1.20090 1.21253 1.18665 1.20248 0.78027 0.88312 0.83981 1.90635 1.46423 1.74931 1.29383 1.21861 1.02989 0.93892 0.98991 1.19180 0.99031 0.85768 0.97386 0.89222 1.21978 0.93405 1.04705 1.00749 1.21095 1.00887 0.98245 0.98746 1.23411 1.00749 0.88607 1.00313 1.20343 0.95889 1.03300 0.94392 1.73813 1.06900 1.23252 1.03841 1.84772 1.47698 1.27699 1.37059 1.24234 1.01254 0.83944 1.00516 1.20348 0.97830 1.01745 0.93204 0.89838 0.94475 0.94528 0.92857 0.93656 0.88709 0.89812 0.94038 0.94996 0.92706 0.89063 0.89802 0.89108 0.93194 0.93030 0.90001 0.90627 0.89574 0.89517 0.90003 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.88 9.53 -35.23 -0.34 -6.21 16 3 C 0.04 0.56 6.28 37.16 0.23 0.79 16 4 C 0.11 1.68 5.62 -4.04 -0.02 1.65 16 5 N -0.58 -11.54 2.42 -175.05 -0.42 -11.97 16 6 C 0.22 5.36 4.05 -5.19 -0.02 5.34 16 7 C -0.53 -14.99 9.94 -34.44 -0.34 -15.33 16 8 H 0.07 2.25 8.06 -52.48 -0.42 1.83 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 11 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 15 C 0.51 9.57 7.39 -10.99 -0.08 9.49 16 16 O -0.54 -12.14 13.55 5.55 0.08 -12.06 16 17 C -0.14 -1.85 3.58 -27.88 -0.10 -1.95 16 18 C 0.01 0.07 2.33 -91.77 -0.21 -0.14 16 19 H 0.09 1.19 6.94 -51.93 -0.36 0.83 16 20 C -0.15 -2.15 8.84 37.16 0.33 -1.82 16 21 C -0.19 -2.23 4.93 -104.42 -0.51 -2.75 16 22 C 0.03 0.35 7.20 -82.10 -0.59 -0.24 16 23 C -0.08 -0.83 9.11 36.01 0.33 -0.50 16 24 N -0.37 -5.02 12.07 33.42 0.40 -4.62 16 25 O 0.09 1.15 11.20 17.18 0.19 1.34 16 26 C -0.04 -0.40 7.49 -35.30 -0.26 -0.66 16 27 C -0.07 -0.54 10.17 36.01 0.37 -0.17 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.55 7.30 -51.92 -0.38 0.17 16 33 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 34 H 0.08 0.99 6.44 -51.93 -0.33 0.65 16 35 H 0.04 1.02 6.17 -51.93 -0.32 0.70 16 36 H 0.03 0.84 6.85 -51.93 -0.36 0.49 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.09 1.11 4.80 -51.93 -0.25 0.86 16 39 H 0.08 0.98 7.26 -51.93 -0.38 0.60 16 40 H 0.09 1.60 5.95 -51.93 -0.31 1.29 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.67 6.71 -51.93 -0.35 0.32 16 43 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.83 5.36 -51.93 -0.28 0.55 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.67 7.39 -51.93 -0.38 0.28 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -35.40 383.20 -5.60 -41.00 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.51 Total: -0.61 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 0.12 Total: -2.81 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.75 Total: -43.61 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.07 Total: -16.94 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.40 -5.60 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152741224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.473 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds