Wall clock time and date at job start Tue Mar 31 2020 14:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00617 * 2 1 4 4 C 1.52995 * 109.47535 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46877 * 64.99991 * 4 3 2 6 6 C 1.46497 * 119.99909 * 269.99580 * 5 4 3 7 7 C 1.50699 * 109.47498 * 270.00461 * 6 5 4 8 8 H 1.07994 * 119.99912 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00118 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00086 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47119 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47063 * 119.99641 * 11 9 7 14 14 H 1.48499 * 109.47325 * 240.00136 * 11 9 7 15 15 C 1.34779 * 120.00276 * 90.00288 * 5 4 3 16 16 O 1.21283 * 119.99607 * 359.97438 * 15 5 4 17 17 C 1.50699 * 120.00062 * 179.97438 * 15 5 4 18 18 C 1.53002 * 109.46923 * 179.97438 * 17 15 5 19 19 H 1.08994 * 109.47177 * 304.99757 * 18 17 15 20 20 C 1.52999 * 109.47032 * 65.00139 * 18 17 15 21 21 C 1.50696 * 109.47161 * 184.99938 * 18 17 15 22 22 C 1.41382 * 128.00503 * 305.79559 * 21 18 17 23 23 C 1.50695 * 126.80622 * 359.97438 * 22 21 18 24 24 N 1.30181 * 106.39670 * 179.97438 * 22 21 18 25 25 O 1.20925 * 111.60028 * 359.97438 * 24 22 21 26 26 C 1.34039 * 111.56801 * 359.76239 * 25 24 22 27 27 C 1.50700 * 126.77680 * 180.28429 * 26 25 24 28 28 H 1.08998 * 109.47286 * 300.00443 * 1 2 3 29 29 H 1.09007 * 109.47383 * 59.99930 * 1 2 3 30 30 H 1.09000 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47039 * 59.99199 * 3 2 1 32 32 H 1.08998 * 109.46983 * 300.00325 * 3 2 1 33 33 H 1.08999 * 109.47142 * 304.99910 * 4 3 2 34 34 H 1.09004 * 109.47272 * 184.99784 * 4 3 2 35 35 H 1.09002 * 109.46798 * 30.00481 * 6 5 4 36 36 H 1.09008 * 109.47295 * 150.00094 * 6 5 4 37 37 H 0.97002 * 120.00563 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.47141 * 59.99741 * 17 15 5 39 39 H 1.08994 * 109.46947 * 299.99710 * 17 15 5 40 40 H 1.08998 * 109.47059 * 294.21972 * 20 18 17 41 41 H 1.08995 * 109.47603 * 54.21921 * 20 18 17 42 42 H 1.09003 * 109.47213 * 174.22273 * 20 18 17 43 43 H 1.08998 * 109.47383 * 94.87205 * 23 22 21 44 44 H 1.09003 * 109.47705 * 214.87373 * 23 22 21 45 45 H 1.09004 * 109.47295 * 334.87471 * 23 22 21 46 46 H 1.09003 * 109.46983 * 265.01797 * 27 26 25 47 47 H 1.09001 * 109.47075 * 25.01366 * 27 26 25 48 48 H 1.09001 * 109.47294 * 145.01418 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3402 7 6 5.5016 -1.2984 -0.9411 8 1 6.2202 -0.5464 -0.6504 9 6 5.8612 -2.6294 -0.9481 10 7 4.9863 -3.5451 -1.3026 11 14 7.5911 -3.1322 -0.4541 12 1 8.3762 -1.9223 -0.1006 13 1 7.5266 -4.0401 0.7193 14 1 8.2454 -3.8338 -1.5875 15 6 4.2634 1.3327 -2.3200 16 8 4.1558 2.5385 -2.2461 17 6 4.7177 0.6942 -3.6072 18 6 4.9742 1.7812 -4.6530 19 1 4.0811 2.3960 -4.7644 20 6 6.1439 2.6578 -4.2011 21 6 5.3094 1.1383 -5.9740 22 6 6.3148 0.1825 -6.2468 23 6 7.2871 -0.4116 -5.2606 24 7 6.2343 -0.0828 -7.5187 25 8 5.3526 0.5510 -8.0507 26 6 4.7129 1.3373 -7.1737 27 6 3.5597 2.2626 -7.4655 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8899 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1764 0.0902 35 1 3.3857 -1.3633 -0.6712 36 1 3.9138 -1.2125 -2.3644 37 1 5.2391 -4.4816 -1.3072 38 1 3.9444 0.0170 -3.9697 39 1 5.6366 0.1351 -3.4309 40 1 5.8628 3.2023 -3.2996 41 1 7.0091 2.0292 -3.9908 42 1 6.3931 3.3666 -4.9908 43 1 6.8939 -1.3572 -4.8873 44 1 8.2439 -0.5852 -5.7531 45 1 7.4269 0.2778 -4.4279 46 1 3.9383 3.2681 -7.6493 47 1 3.0243 1.9092 -8.3467 48 1 2.8826 2.2797 -6.6115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152741319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:11 Heat of formation + Delta-G solvation = -38.920857 kcal Electronic energy + Delta-G solvation = -29169.086459 eV Core-core repulsion = 25227.285563 eV Total energy + Delta-G solvation = -3941.800896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.71063 -39.41803 -37.53862 -36.26835 -34.87883 -33.58345 -32.66602 -32.18361 -30.07524 -28.50544 -27.59886 -27.37578 -26.92726 -25.78034 -23.72439 -22.87711 -22.27625 -20.35559 -19.88817 -18.20135 -17.43552 -16.78471 -16.61145 -16.35802 -15.93216 -15.67587 -15.21576 -14.73956 -14.63709 -14.41783 -14.01939 -13.84219 -13.38244 -13.13267 -12.98328 -12.94593 -12.79649 -12.49580 -12.35947 -12.29094 -12.11882 -11.80481 -11.79097 -11.52396 -11.44309 -11.23622 -10.95878 -10.92574 -10.86383 -10.85450 -10.51170 -10.24996 -10.08190 -9.69080 -9.54671 -9.40530 -9.00343 -8.87411 -8.50753 -7.68613 -6.14056 -4.21252 1.64316 2.44037 3.22153 3.28209 3.31272 3.33401 3.40849 3.91122 4.15049 4.35022 4.43817 4.63980 4.94227 5.05403 5.19004 5.33553 5.34867 5.37273 5.38211 5.45801 5.48319 5.56941 5.61468 5.63990 5.69730 5.74282 5.74558 5.81484 5.84419 5.85854 6.00299 6.08408 6.16367 6.20235 6.21713 6.33898 6.36086 6.38265 6.63325 6.72178 6.88955 7.33436 7.47284 7.60297 7.82199 8.11924 8.38872 8.50110 8.82830 9.02983 9.45933 10.92516 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.005141 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.047839 B = 5445.264073 C = 7460.318241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.586 5.586 6 C 0.239 3.761 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.518 3.482 16 O -0.580 6.580 17 C -0.130 4.130 18 C 0.005 3.995 19 H 0.084 0.916 20 C -0.147 4.147 21 C -0.183 4.183 22 C 0.035 3.965 23 C -0.085 4.085 24 N -0.374 5.374 25 O 0.091 5.909 26 C -0.043 4.043 27 C -0.070 4.070 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 10.149 -5.561 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.316 5.316 6 C 0.119 3.881 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.718 3.282 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.307 3.693 16 O -0.462 6.462 17 C -0.170 4.170 18 C -0.014 4.014 19 H 0.103 0.897 20 C -0.204 4.204 21 C -0.187 4.187 22 C -0.124 4.124 23 C -0.142 4.142 24 N -0.081 5.081 25 O 0.026 5.974 26 C -0.106 4.106 27 C -0.128 4.128 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.017 9.551 -6.356 12.155 hybrid contribution 0.410 -0.101 0.923 1.015 sum -3.607 9.449 -5.434 11.481 Atomic orbital electron populations 1.22677 0.82209 1.02385 0.99125 1.88061 1.18621 1.27480 1.95189 1.23019 0.95384 0.84878 0.99654 1.21317 0.90961 0.99546 0.88426 1.48175 1.63333 1.10020 1.10044 1.19483 0.97290 0.72734 0.98585 1.21541 0.97332 0.92349 1.46337 0.92196 1.24911 0.97321 0.96398 0.95041 1.69940 1.34224 1.01121 1.47369 0.86563 0.84541 0.78725 0.78401 1.19658 1.20902 1.20819 1.20424 0.76680 0.86574 0.85637 1.90536 1.56190 1.14694 1.84819 1.21712 1.04587 0.98334 0.92329 1.19198 0.99698 0.95058 0.87444 0.89731 1.21937 0.96999 0.99250 1.02181 1.21070 0.98766 1.01992 0.96823 1.23455 0.99243 0.97665 0.91995 1.20371 0.95975 1.02000 0.95863 1.73799 1.07713 1.16084 1.10470 1.84760 1.35024 1.42134 1.35432 1.24164 0.99205 0.98098 0.89158 1.20291 0.92432 0.96134 1.03914 0.94747 0.94686 0.89884 0.93352 0.93437 0.89598 0.89509 0.93306 0.94818 0.92669 0.89470 0.87422 0.89803 0.92885 0.93510 0.89228 0.90963 0.89455 0.89689 0.90161 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.59 9.53 -35.23 -0.34 -6.93 16 3 C 0.05 0.77 6.28 37.15 0.23 1.00 16 4 C 0.12 2.17 5.81 -4.04 -0.02 2.15 16 5 N -0.59 -11.95 2.42 -175.06 -0.42 -12.38 16 6 C 0.24 5.62 4.78 -5.20 -0.02 5.60 16 7 C -0.54 -13.63 9.28 -34.44 -0.32 -13.95 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 11 Si 0.89 20.28 29.54 -169.99 -5.02 15.25 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 C 0.52 10.09 7.42 -10.99 -0.08 10.01 16 16 O -0.58 -11.62 13.55 5.56 0.08 -11.54 16 17 C -0.13 -2.30 3.50 -27.88 -0.10 -2.40 16 18 C 0.01 0.08 2.30 -91.77 -0.21 -0.13 16 19 H 0.08 1.24 7.04 -51.93 -0.37 0.88 16 20 C -0.15 -2.18 8.81 37.16 0.33 -1.85 16 21 C -0.18 -2.75 4.95 -104.42 -0.52 -3.27 16 22 C 0.04 0.57 7.23 -82.10 -0.59 -0.02 16 23 C -0.08 -1.29 9.17 36.00 0.33 -0.96 16 24 N -0.37 -6.32 12.07 33.42 0.40 -5.91 16 25 O 0.09 1.38 11.20 17.18 0.19 1.57 16 26 C -0.04 -0.58 7.49 -35.30 -0.26 -0.84 16 27 C -0.07 -0.64 10.12 36.01 0.36 -0.27 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 34 H 0.09 1.47 7.42 -51.93 -0.39 1.09 16 35 H 0.05 1.26 7.11 -51.93 -0.37 0.89 16 36 H 0.03 0.83 6.44 -51.92 -0.33 0.50 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 1.58 7.40 -51.93 -0.38 1.19 16 39 H 0.11 2.03 5.93 -51.93 -0.31 1.72 16 40 H 0.08 1.37 6.08 -51.93 -0.32 1.06 16 41 H 0.05 0.78 6.10 -51.93 -0.32 0.46 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.09 1.28 5.19 -51.93 -0.27 1.01 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -29.96 388.38 -6.01 -35.97 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.63 Total: 3.55 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 0.14 Total: -1.75 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.72 Total: -41.99 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.07 Total: -16.89 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.96 -6.01 -35.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152741319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.951 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds