Wall clock time and date at job start Tue Mar 31 2020 14:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00617 * 2 1 4 4 C 1.52995 * 109.47535 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46877 * 64.99991 * 4 3 2 6 6 C 1.46497 * 119.99909 * 269.99580 * 5 4 3 7 7 C 1.50699 * 109.47498 * 270.00461 * 6 5 4 8 8 H 1.07994 * 119.99912 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00118 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00086 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47119 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47063 * 119.99641 * 11 9 7 14 14 H 1.48499 * 109.47325 * 240.00136 * 11 9 7 15 15 C 1.34779 * 120.00276 * 90.00288 * 5 4 3 16 16 O 1.21283 * 119.99607 * 359.97438 * 15 5 4 17 17 C 1.50699 * 120.00062 * 179.97438 * 15 5 4 18 18 C 1.53002 * 109.46923 * 179.97438 * 17 15 5 19 19 H 1.08994 * 109.47177 * 304.99757 * 18 17 15 20 20 C 1.52999 * 109.47032 * 65.00139 * 18 17 15 21 21 C 1.50696 * 109.47161 * 184.99938 * 18 17 15 22 22 C 1.41382 * 128.00503 * 305.79559 * 21 18 17 23 23 C 1.50695 * 126.80622 * 359.97438 * 22 21 18 24 24 N 1.30181 * 106.39670 * 179.97438 * 22 21 18 25 25 O 1.20925 * 111.60028 * 359.97438 * 24 22 21 26 26 C 1.34039 * 111.56801 * 359.76239 * 25 24 22 27 27 C 1.50700 * 126.77680 * 180.28429 * 26 25 24 28 28 H 1.08998 * 109.47286 * 300.00443 * 1 2 3 29 29 H 1.09007 * 109.47383 * 59.99930 * 1 2 3 30 30 H 1.09000 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47039 * 59.99199 * 3 2 1 32 32 H 1.08998 * 109.46983 * 300.00325 * 3 2 1 33 33 H 1.08999 * 109.47142 * 304.99910 * 4 3 2 34 34 H 1.09004 * 109.47272 * 184.99784 * 4 3 2 35 35 H 1.09002 * 109.46798 * 30.00481 * 6 5 4 36 36 H 1.09008 * 109.47295 * 150.00094 * 6 5 4 37 37 H 0.97002 * 120.00563 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.47141 * 59.99741 * 17 15 5 39 39 H 1.08994 * 109.46947 * 299.99710 * 17 15 5 40 40 H 1.08998 * 109.47059 * 294.21972 * 20 18 17 41 41 H 1.08995 * 109.47603 * 54.21921 * 20 18 17 42 42 H 1.09003 * 109.47213 * 174.22273 * 20 18 17 43 43 H 1.08998 * 109.47383 * 94.87205 * 23 22 21 44 44 H 1.09003 * 109.47705 * 214.87373 * 23 22 21 45 45 H 1.09004 * 109.47295 * 334.87471 * 23 22 21 46 46 H 1.09003 * 109.46983 * 265.01797 * 27 26 25 47 47 H 1.09001 * 109.47075 * 25.01366 * 27 26 25 48 48 H 1.09001 * 109.47294 * 145.01418 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3402 7 6 5.5016 -1.2984 -0.9411 8 1 6.2202 -0.5464 -0.6504 9 6 5.8612 -2.6294 -0.9481 10 7 4.9863 -3.5451 -1.3026 11 14 7.5911 -3.1322 -0.4541 12 1 8.3762 -1.9223 -0.1006 13 1 7.5266 -4.0401 0.7193 14 1 8.2454 -3.8338 -1.5875 15 6 4.2634 1.3327 -2.3200 16 8 4.1558 2.5385 -2.2461 17 6 4.7177 0.6942 -3.6072 18 6 4.9742 1.7812 -4.6530 19 1 4.0811 2.3960 -4.7644 20 6 6.1439 2.6578 -4.2011 21 6 5.3094 1.1383 -5.9740 22 6 6.3148 0.1825 -6.2468 23 6 7.2871 -0.4116 -5.2606 24 7 6.2343 -0.0828 -7.5187 25 8 5.3526 0.5510 -8.0507 26 6 4.7129 1.3373 -7.1737 27 6 3.5597 2.2626 -7.4655 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8899 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1764 0.0902 35 1 3.3857 -1.3633 -0.6712 36 1 3.9138 -1.2125 -2.3644 37 1 5.2391 -4.4816 -1.3072 38 1 3.9444 0.0170 -3.9697 39 1 5.6366 0.1351 -3.4309 40 1 5.8628 3.2023 -3.2996 41 1 7.0091 2.0292 -3.9908 42 1 6.3931 3.3666 -4.9908 43 1 6.8939 -1.3572 -4.8873 44 1 8.2439 -0.5852 -5.7531 45 1 7.4269 0.2778 -4.4279 46 1 3.9383 3.2681 -7.6493 47 1 3.0243 1.9092 -8.3467 48 1 2.8826 2.2797 -6.6115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152741319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:10 Heat of formation + Delta-G solvation = -55.415240 kcal Electronic energy + Delta-G solvation = -29169.801709 eV Core-core repulsion = 25227.285563 eV Total energy + Delta-G solvation = -3942.516146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.90738 -40.96249 -38.81307 -37.54388 -36.53136 -34.74948 -34.53119 -33.39577 -31.49916 -29.73246 -29.12514 -28.50610 -28.34799 -27.00573 -25.01773 -24.73250 -23.62521 -21.61186 -21.02817 -19.77320 -18.65768 -18.57734 -18.13525 -17.61205 -17.36436 -17.01350 -16.67842 -16.34778 -16.03442 -15.80468 -15.29812 -15.10045 -14.47659 -14.39982 -14.31448 -14.17958 -13.91469 -13.79788 -13.64611 -13.55070 -13.47189 -13.36942 -13.09514 -13.03727 -12.74398 -12.69379 -12.63509 -12.35651 -12.21578 -12.17836 -12.09121 -11.86809 -11.60157 -11.43468 -10.78250 -10.69064 -10.60426 -10.38681 -10.02731 -9.37351 -8.15363 -6.29619 0.53084 1.22228 1.40580 1.44272 1.53983 1.81723 2.22983 2.34899 2.48654 2.96855 3.15203 3.22444 3.56540 3.73688 3.78313 4.12690 4.15325 4.19362 4.27204 4.32490 4.40009 4.42089 4.48342 4.54087 4.57262 4.59490 4.68448 4.72130 4.73628 4.81089 4.82472 4.85364 4.87914 4.92382 4.95719 5.05670 5.11719 5.13752 5.26250 5.34745 5.36806 5.50936 5.70695 5.91208 6.12584 6.31413 6.65693 6.88494 7.34324 7.35717 7.46863 8.90233 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.005141 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.047839 B = 5445.264073 C = 7460.318241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.261 3.739 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.023 3.977 10 N -0.921 5.921 11 Si 0.949 3.051 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.278 1.278 15 C 0.517 3.483 16 O -0.581 6.581 17 C -0.124 4.124 18 C 0.018 3.982 19 H 0.094 0.906 20 C -0.141 4.141 21 C -0.203 4.203 22 C 0.022 3.978 23 C -0.082 4.082 24 N -0.399 5.399 25 O 0.088 5.912 26 C -0.026 4.026 27 C -0.072 4.072 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.265 0.735 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 11.710 -5.903 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.022 4.022 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.140 3.860 7 C -0.578 4.578 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.560 5.560 11 Si 0.775 3.225 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.204 1.204 15 C 0.306 3.694 16 O -0.464 6.464 17 C -0.164 4.164 18 C -0.001 4.001 19 H 0.112 0.888 20 C -0.198 4.198 21 C -0.207 4.207 22 C -0.136 4.136 23 C -0.140 4.140 24 N -0.107 5.107 25 O 0.025 5.975 26 C -0.089 4.089 27 C -0.129 4.129 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.119 0.881 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.344 11.140 -6.695 13.704 hybrid contribution 0.425 -0.544 1.023 1.234 sum -3.918 10.596 -5.673 12.641 Atomic orbital electron populations 1.22862 0.80053 1.03240 1.00659 1.88010 1.21127 1.28491 1.95483 1.22942 0.93675 0.84635 1.00912 1.21487 0.92830 0.99458 0.86987 1.48142 1.63896 1.08827 1.11372 1.18982 0.95732 0.74540 0.96770 1.21724 0.97946 0.92364 1.45795 0.92660 1.25606 1.00665 0.96452 0.95022 1.70041 1.36023 1.01418 1.48534 0.85634 0.80457 0.78398 0.78012 1.19040 1.20776 1.20384 1.20657 0.76334 0.86520 0.85849 1.90528 1.56310 1.14651 1.84953 1.21656 1.03415 0.98905 0.92374 1.19067 1.00221 0.94149 0.86689 0.88785 1.21867 0.96651 0.99262 1.02046 1.21053 0.99470 1.02865 0.97355 1.23667 0.99772 0.98126 0.92069 1.20338 0.96461 1.01187 0.95975 1.73785 1.08866 1.17209 1.10824 1.84731 1.34857 1.42200 1.35687 1.24911 0.98882 0.96900 0.88206 1.20567 0.91009 0.96163 1.05158 0.92415 0.93836 0.89503 0.90173 0.93851 0.90568 0.88516 0.95785 0.96367 0.92593 0.90333 0.88865 0.91303 0.93248 0.91713 0.90843 0.89730 0.89232 0.87401 0.88090 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.31 9.53 -148.98 -1.42 -15.73 16 3 C 0.06 1.71 6.28 71.98 0.45 2.16 16 4 C 0.12 4.10 5.81 86.38 0.50 4.60 16 5 N -0.59 -24.41 2.42 -826.15 -2.00 -26.41 16 6 C 0.26 12.63 4.78 85.63 0.41 13.04 16 7 C -0.54 -27.85 9.28 25.60 0.24 -27.61 16 8 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.02 1.19 5.46 84.66 0.46 1.65 16 10 N -0.92 -51.53 13.29 21.45 0.28 -51.25 16 11 Si 0.95 41.76 29.54 68.60 2.03 43.78 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.52 20.09 7.42 87.66 0.65 20.74 16 16 O -0.58 -22.76 13.55 -3.04 -0.04 -22.80 16 17 C -0.12 -4.42 3.50 29.85 0.10 -4.31 16 18 C 0.02 0.53 2.30 -11.54 -0.03 0.50 16 19 H 0.09 2.59 7.04 -2.39 -0.02 2.57 16 20 C -0.14 -4.03 8.81 71.98 0.63 -3.40 16 21 C -0.20 -5.93 4.95 -19.74 -0.10 -6.03 16 22 C 0.02 0.71 7.23 43.58 0.31 1.02 16 23 C -0.08 -2.53 9.17 71.23 0.65 -1.88 16 24 N -0.40 -13.34 12.07 -49.55 -0.60 -13.94 16 25 O 0.09 2.59 11.20 71.64 0.80 3.39 16 26 C -0.03 -0.64 7.49 25.04 0.19 -0.45 16 27 C -0.07 -1.07 10.12 71.24 0.72 -0.35 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.99 8.14 -2.38 -0.02 0.98 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 34 H 0.10 3.20 7.42 -2.39 -0.02 3.18 16 35 H 0.02 1.29 7.11 -2.39 -0.02 1.27 16 36 H 0.02 0.94 6.44 -2.38 -0.02 0.92 16 37 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.08 2.91 7.40 -2.39 -0.02 2.90 16 39 H 0.09 3.61 5.93 -2.39 -0.01 3.59 16 40 H 0.07 2.18 6.08 -2.39 -0.01 2.16 16 41 H 0.05 1.42 6.10 -2.39 -0.01 1.41 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.09 2.66 5.19 -2.38 -0.01 2.64 16 46 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.10 1.39 7.53 -2.39 -0.02 1.37 16 Total: -1.00 -64.32 388.38 6.46 -57.85 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.96 Total: 23.46 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 6.45 Total: 1.64 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -2.31 Total: -91.59 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.66 Total: -35.14 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -64.32 6.46 -57.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152741319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.439 kcal (2) G-P(sol) polarization free energy of solvation -64.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds