Wall clock time and date at job start Tue Mar 31 2020 14:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34511 * 125.78724 * 2 1 4 4 C 1.41386 * 106.84024 * 179.89204 * 3 2 1 5 5 C 1.50697 * 126.58101 * 180.12617 * 4 3 2 6 6 C 1.53004 * 109.46814 * 240.29346 * 5 4 3 7 7 O 1.42897 * 109.47230 * 0.29200 * 5 4 3 8 8 C 1.52993 * 109.47389 * 120.29601 * 5 4 3 9 9 N 1.46504 * 109.47303 * 180.02562 * 8 5 4 10 10 C 1.34775 * 120.00196 * 180.02562 * 9 8 5 11 11 O 1.21584 * 119.99749 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00095 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00078 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46971 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46683 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47022 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99568 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00070 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00378 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47470 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47026 * 120.00097 * 20 18 16 23 23 H 1.48503 * 109.47355 * 239.99898 * 20 18 16 24 24 C 1.34513 * 106.83817 * 0.37212 * 4 3 2 25 25 C 1.50700 * 125.79048 * 179.79592 * 24 4 3 26 26 O 1.34303 * 108.42380 * 359.77176 * 24 4 3 27 27 H 1.09002 * 109.47152 * 179.71525 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.71626 * 1 2 3 29 29 H 1.09004 * 109.47113 * 299.71607 * 1 2 3 30 30 H 1.08004 * 126.58127 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46953 * 59.99919 * 6 5 4 32 32 H 1.09002 * 109.47170 * 179.97438 * 6 5 4 33 33 H 1.08990 * 109.47334 * 300.00100 * 6 5 4 34 34 H 0.96694 * 114.00038 * 60.00001 * 7 5 4 35 35 H 1.09005 * 109.47175 * 299.99312 * 8 5 4 36 36 H 1.08993 * 109.47514 * 59.99703 * 8 5 4 37 37 H 0.97003 * 119.99850 * 359.97438 * 9 8 5 38 38 H 0.97003 * 119.99951 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47084 * 299.99896 * 13 12 10 40 40 H 1.09004 * 109.47211 * 60.00285 * 13 12 10 41 41 H 1.08992 * 109.47132 * 300.00195 * 14 13 12 42 42 H 1.09000 * 109.46920 * 60.00692 * 14 13 12 43 43 H 1.09006 * 109.47525 * 299.99953 * 15 14 13 44 44 H 1.08998 * 109.47497 * 59.99971 * 15 14 13 45 45 H 0.96997 * 120.00236 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.47148 * 179.97438 * 25 24 4 47 47 H 1.08997 * 109.47014 * 300.00106 * 25 24 4 48 48 H 1.09009 * 109.46883 * 59.99492 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 0.0025 5 6 4.8732 1.4850 0.0062 6 6 5.7010 1.1855 -1.2452 7 8 4.5034 2.8653 0.0136 8 6 5.7028 1.1726 1.2531 9 7 6.9102 2.0023 1.2570 10 6 7.7970 1.8970 2.2664 11 8 7.5947 1.1139 3.1741 12 7 8.9081 2.6600 2.2696 13 6 9.8717 2.5460 3.3671 14 6 11.0328 3.5135 3.1289 15 6 12.0395 3.3939 4.2748 16 6 13.1828 4.3474 4.0406 17 1 13.1908 4.9754 3.1619 18 6 14.2191 4.4171 4.9473 19 7 14.2097 3.6520 6.0169 20 14 15.6367 5.5984 4.6565 21 1 15.4104 6.3413 3.3907 22 1 15.7199 6.5593 5.7857 23 1 16.9065 4.8342 4.5622 24 6 3.5814 -0.7121 -0.0044 25 6 4.7706 -1.6378 -0.0091 26 8 2.2925 -1.0894 -0.0059 27 1 -0.3633 -1.0277 -0.0051 28 1 -0.3633 0.5182 -0.8874 29 1 -0.3633 0.5094 0.8926 30 1 1.9665 2.1204 0.0004 31 1 5.1100 1.4081 -2.1337 32 1 6.5995 1.8028 -1.2429 33 1 5.9831 0.1328 -1.2509 34 1 3.9755 3.1269 0.7803 35 1 5.1130 1.3860 2.1447 36 1 5.9849 0.1198 1.2475 37 1 7.0718 2.6268 0.5326 38 1 9.0697 3.2845 1.5452 39 1 9.3807 2.7919 4.3087 40 1 10.2528 1.5257 3.4116 41 1 11.5236 3.2672 2.1874 42 1 10.6521 4.5339 3.0842 43 1 11.5489 3.6400 5.2167 44 1 12.4201 2.3735 4.3192 45 1 14.9389 3.7008 6.6546 46 1 4.4260 -2.6719 -0.0140 47 1 5.3730 -1.4509 -0.8981 48 1 5.3729 -1.4600 0.8819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176387984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:29 Heat of formation + Delta-G solvation = -112.401487 kcal Electronic energy + Delta-G solvation = -26995.378605 eV Core-core repulsion = 23050.391350 eV Total energy + Delta-G solvation = -3944.987255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.71924 -41.14655 -39.33419 -36.99250 -35.42495 -35.16836 -34.56230 -33.92050 -32.93070 -31.16762 -30.45770 -28.79910 -27.40588 -25.71227 -24.82647 -23.26797 -22.28647 -22.15432 -21.79789 -20.47220 -19.32544 -18.58280 -18.18719 -17.42223 -17.10537 -16.98467 -16.65744 -16.41733 -16.15021 -15.75180 -15.36523 -15.29018 -14.98845 -14.59652 -14.45963 -14.25236 -14.14610 -13.95649 -13.73686 -13.71203 -13.58791 -13.42409 -13.19334 -12.90993 -12.78463 -12.72442 -12.53028 -12.48191 -12.32158 -12.13309 -11.65998 -11.65558 -11.38088 -11.27541 -11.12060 -10.60354 -10.54707 -10.39829 -9.76666 -9.14419 -8.18203 -6.29519 0.68456 1.42670 1.42860 1.44874 1.56180 1.73549 1.97031 2.14031 2.43072 3.12465 3.15661 3.35137 3.54798 3.67224 3.76836 3.90089 4.06948 4.18916 4.25599 4.31055 4.33563 4.43640 4.58500 4.59663 4.61500 4.71747 4.76523 4.80852 4.85365 4.93787 4.98138 5.00404 5.03949 5.07451 5.18605 5.19034 5.39354 5.42422 5.48864 5.56290 5.56672 5.73183 5.86073 5.99437 6.16655 6.24348 6.65886 6.88012 7.10458 7.40037 7.57453 8.94078 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.034533 B = 0.001750 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.627947 B =15991.730279 C =16195.620338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 C -0.206 4.206 4 C -0.215 4.215 5 C 0.211 3.789 6 C -0.144 4.144 7 O -0.553 6.553 8 C 0.116 3.884 9 N -0.723 5.723 10 C 0.698 3.302 11 O -0.640 6.640 12 N -0.729 5.729 13 C 0.150 3.850 14 C -0.100 4.100 15 C 0.022 3.978 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.258 1.258 22 H -0.281 1.281 23 H -0.280 1.280 24 C -0.011 4.011 25 C -0.088 4.088 26 O -0.189 6.189 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.163 0.837 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.389 0.611 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.412 0.588 38 H 0.412 0.588 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.067 0.933 43 H -0.008 1.008 44 H -0.007 1.007 45 H 0.263 0.737 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.194 -6.458 -19.015 34.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C -0.225 4.225 4 C -0.217 4.217 5 C 0.169 3.831 6 C -0.201 4.201 7 O -0.361 6.361 8 C -0.009 4.009 9 N -0.380 5.380 10 C 0.398 3.602 11 O -0.522 6.522 12 N -0.385 5.385 13 C 0.025 3.975 14 C -0.138 4.138 15 C -0.016 4.016 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.182 1.182 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.061 4.061 25 C -0.144 4.144 26 O -0.086 6.086 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.181 0.819 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.238 0.762 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.011 0.989 44 H 0.012 0.988 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.123 0.877 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.061 -7.494 -18.614 34.497 hybrid contribution 0.672 0.991 0.502 1.298 sum -27.389 -6.503 -18.112 33.474 Atomic orbital electron populations 1.20462 0.82728 1.04723 1.04950 1.23063 0.95428 0.83598 1.05570 1.21525 0.91389 1.00421 1.09187 1.20717 0.96167 0.93711 1.11099 1.19395 0.88731 0.80571 0.94408 1.21897 0.99593 1.03246 0.95315 1.86512 1.75189 1.23889 1.50478 1.21927 0.85136 0.95763 0.98081 1.44773 1.22256 1.45578 1.25424 1.16138 0.80519 0.81021 0.82565 1.90893 1.78753 1.43100 1.39485 1.45015 1.21670 1.44039 1.27767 1.21074 0.88513 0.99355 0.88522 1.21589 0.94157 0.98316 0.99777 1.18959 0.93509 0.95578 0.93505 1.21717 1.05971 1.22334 1.07754 0.91505 1.26023 1.01495 0.97777 0.94849 1.70118 1.33659 1.41059 1.12686 0.85361 0.78404 0.78475 0.78544 1.18201 1.20650 1.20590 1.22525 0.83711 0.94490 1.05389 1.20708 0.90901 0.98185 1.04570 1.83987 1.16673 1.36005 1.71971 0.90203 0.88186 0.88339 0.81937 0.91426 0.90729 0.89545 0.76197 0.92789 0.90568 0.75051 0.75194 0.93623 0.93401 0.91271 0.91417 0.98948 0.98841 0.92852 0.89408 0.87706 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.42 71.24 0.74 0.19 16 2 C -0.03 -0.42 7.32 24.83 0.18 -0.24 16 3 C -0.21 -3.23 10.01 22.19 0.22 -3.01 16 4 C -0.21 -3.63 4.83 -19.94 -0.10 -3.73 16 5 C 0.21 3.24 0.81 -11.54 -0.01 3.23 16 6 C -0.14 -1.89 8.52 71.98 0.61 -1.27 16 7 O -0.55 -8.34 12.26 -148.98 -1.83 -10.17 16 8 C 0.12 2.26 4.64 86.38 0.40 2.66 16 9 N -0.72 -15.06 5.15 -478.54 -2.47 -17.53 16 10 C 0.70 21.02 8.57 179.05 1.53 22.55 16 11 O -0.64 -25.50 16.34 -3.98 -0.07 -25.56 16 12 N -0.73 -20.53 5.56 -478.53 -2.66 -23.19 16 13 C 0.15 5.40 5.67 86.38 0.49 5.89 16 14 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 15 C 0.02 1.16 4.97 29.85 0.15 1.31 16 16 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 17 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 20 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 C -0.01 -0.19 7.15 24.83 0.18 -0.01 16 25 C -0.09 -1.10 9.03 71.24 0.64 -0.46 16 26 O -0.19 -3.60 10.65 -2.51 -0.03 -3.63 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.16 1.96 7.94 -2.91 -0.02 1.93 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.90 6.86 -2.39 -0.02 0.88 16 33 H 0.09 0.95 5.34 -2.39 -0.01 0.94 16 34 H 0.39 4.25 8.76 -74.06 -0.65 3.60 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.08 1.55 5.34 -2.39 -0.01 1.54 16 37 H 0.41 6.52 7.21 -92.71 -0.67 5.85 16 38 H 0.41 8.71 8.49 -92.71 -0.79 7.93 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 0.96 6.05 -2.39 -0.01 0.95 16 48 H 0.09 1.19 6.05 -2.38 -0.01 1.18 16 Total: -1.00 -76.63 391.69 0.07 -76.57 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -1.10 Total: 20.89 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 5.90 Total: -6.31 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -4.84 Total: -97.68 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.92 Total: -39.36 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -76.63 0.07 -76.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176387984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.836 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds