Wall clock time and date at job start Tue Mar 31 2020 14:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00023 * 2 1 4 4 C 1.53001 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47338 * 175.71564 * 4 3 2 6 6 N 1.46902 * 109.47296 * 295.71876 * 4 3 2 7 7 C 1.46898 * 110.99997 * 201.76986 * 6 4 3 8 8 H 1.09003 * 109.47190 * 322.10449 * 7 6 4 9 9 C 1.52992 * 109.47213 * 82.10282 * 7 6 4 10 10 C 1.50699 * 109.46815 * 202.10637 * 7 6 4 11 11 O 1.21273 * 120.00219 * 359.97438 * 10 7 6 12 12 N 1.34780 * 119.99967 * 179.97438 * 10 7 6 13 13 C 1.46502 * 119.99650 * 359.97438 * 12 10 7 14 14 C 1.46495 * 120.00420 * 179.97438 * 12 10 7 15 15 C 1.50706 * 109.47086 * 90.00062 * 14 12 10 16 16 H 1.08004 * 119.99674 * 0.02562 * 15 14 12 17 17 C 1.37868 * 120.00141 * 180.02562 * 15 14 12 18 18 N 1.31522 * 120.00129 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00008 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47175 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47059 * 120.00105 * 19 17 15 22 22 H 1.48509 * 109.47105 * 239.99638 * 19 17 15 23 23 C 1.50701 * 109.47069 * 55.71554 * 4 3 2 24 24 C 1.34521 * 125.78999 * 99.71443 * 23 4 3 25 25 C 1.41374 * 106.84350 * 179.89204 * 24 23 4 26 26 C 1.34516 * 106.84221 * 0.37207 * 25 24 23 27 27 C 1.50696 * 125.79493 * 179.75453 * 26 25 24 28 28 O 1.34300 * 125.79169 * 280.02738 * 23 4 3 29 29 H 1.08997 * 109.47341 * 59.99936 * 1 2 3 30 30 H 1.09010 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47168 * 299.99580 * 1 2 3 32 32 H 1.08998 * 109.47168 * 300.00119 * 3 2 1 33 33 H 1.09001 * 109.46905 * 60.00237 * 3 2 1 34 34 H 1.00899 * 110.99727 * 77.81079 * 6 4 3 35 35 H 1.09002 * 109.47279 * 187.33308 * 9 7 6 36 36 H 1.08998 * 109.47625 * 307.33771 * 9 7 6 37 37 H 1.09006 * 109.47240 * 67.33393 * 9 7 6 38 38 H 1.08995 * 109.47317 * 89.99957 * 13 12 10 39 39 H 1.09000 * 109.47074 * 210.00139 * 13 12 10 40 40 H 1.09002 * 109.47433 * 329.99745 * 13 12 10 41 41 H 1.08995 * 109.47588 * 210.00029 * 14 12 10 42 42 H 1.09000 * 109.46974 * 330.00043 * 14 12 10 43 43 H 0.96997 * 119.99973 * 179.97438 * 18 17 15 44 44 H 1.08001 * 126.57420 * 0.03101 * 24 23 4 45 45 H 1.07999 * 126.58273 * 180.12827 * 25 24 23 46 46 H 1.09000 * 109.47448 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.46983 * 300.00188 * 27 26 25 48 48 H 1.08998 * 109.47676 * 59.99410 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1775 -0.0761 6 7 3.9757 0.5470 1.2487 7 6 5.3812 0.8642 1.5346 8 1 5.9476 0.8766 0.6033 9 6 5.4684 2.2377 2.2029 10 6 5.9543 -0.1807 2.4571 11 8 5.2601 -1.0987 2.8391 12 7 7.2384 -0.0948 2.8575 13 6 8.0771 1.0139 2.3955 14 6 7.7954 -1.1102 3.7547 15 6 8.3883 -2.2303 2.9392 16 1 8.3539 -2.1896 1.8605 17 6 8.9744 -3.3069 3.5702 18 7 9.0167 -3.3562 4.8838 19 14 9.7087 -4.6956 2.5594 20 1 9.5331 -4.4024 1.1143 21 1 11.1560 -4.8204 2.8674 22 1 9.0201 -5.9684 2.8931 23 6 3.9735 0.3469 -1.1730 24 6 4.4483 0.8161 -2.3409 25 6 4.7358 -0.3086 -3.1477 26 6 4.4117 -1.3978 -2.4278 27 6 4.5434 -2.8277 -2.8850 28 8 3.9505 -0.9946 -1.2326 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 3.8295 -0.4508 1.2161 35 1 6.5142 2.5304 2.2968 36 1 4.9388 2.9716 1.5955 37 1 5.0143 2.1897 3.1927 38 1 7.9945 1.8473 3.0932 39 1 9.1153 0.6864 2.3421 40 1 7.7456 1.3331 1.4074 41 1 8.5719 -0.6613 4.3740 42 1 7.0044 -1.5044 4.3928 43 1 9.4287 -4.1138 5.3277 44 1 4.5859 1.8531 -2.6096 45 1 5.1350 -0.2958 -4.1512 46 1 4.2047 -3.4952 -2.0926 47 1 3.9334 -2.9821 -3.7751 48 1 5.5867 -3.0401 -3.1183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184729219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:35 Heat of formation + Delta-G solvation = -81.464244 kcal Electronic energy + Delta-G solvation = -28982.561440 eV Core-core repulsion = 25038.915725 eV Total energy + Delta-G solvation = -3943.645716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.53680 -41.00923 -39.08152 -37.23371 -36.63836 -34.86188 -34.08445 -33.52928 -31.86977 -29.92981 -28.90639 -27.67875 -27.50592 -26.54981 -25.65834 -23.73805 -22.67625 -22.60372 -20.85251 -20.10784 -18.74655 -18.39621 -17.84928 -17.49497 -17.16998 -17.08459 -16.61735 -16.45629 -16.41075 -15.79781 -15.46937 -15.33677 -14.69864 -14.41527 -14.19652 -14.00698 -13.94767 -13.85513 -13.68341 -13.64301 -13.51433 -13.35136 -13.32395 -12.93958 -12.88122 -12.78079 -12.70168 -12.55395 -12.43168 -12.29623 -12.14674 -12.08391 -11.70665 -10.76988 -10.67591 -10.58328 -10.50697 -9.68772 -9.43894 -9.17767 -8.25257 -6.40280 0.78823 1.32558 1.35504 1.47030 1.68605 1.78967 1.99691 2.24151 2.39575 2.91852 3.03954 3.11630 3.58983 3.64786 3.95966 4.03988 4.08314 4.16281 4.26308 4.31579 4.38403 4.47884 4.50887 4.55641 4.58465 4.63576 4.64562 4.67620 4.79757 4.82814 4.86038 4.87840 4.92800 4.95358 4.99261 5.05347 5.19867 5.28332 5.34212 5.52490 5.65916 5.77729 5.87398 6.03301 6.08943 6.28124 6.39617 6.66552 6.75448 7.24826 7.43638 8.82031 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.004009 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.094690 B = 6982.175836 C = 8002.211061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.413 6.413 3 C 0.072 3.928 4 C 0.169 3.831 5 H 0.153 0.847 6 N -0.664 5.664 7 C 0.078 3.922 8 H 0.074 0.926 9 C -0.138 4.138 10 C 0.493 3.507 11 O -0.591 6.591 12 N -0.606 5.606 13 C 0.075 3.925 14 C 0.260 3.740 15 C -0.543 4.543 16 H 0.048 0.952 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.265 1.265 22 H -0.281 1.281 23 C -0.054 4.054 24 C -0.206 4.206 25 C -0.221 4.221 26 C -0.040 4.040 27 C -0.076 4.076 28 O -0.190 6.190 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.348 0.652 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.027 0.973 42 H -0.004 1.004 43 H 0.268 0.732 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.103 15.310 -17.297 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.332 6.332 3 C -0.005 4.005 4 C 0.059 3.941 5 H 0.170 0.830 6 N -0.296 5.296 7 C -0.035 4.035 8 H 0.092 0.908 9 C -0.195 4.195 10 C 0.281 3.719 11 O -0.472 6.472 12 N -0.337 5.337 13 C -0.067 4.067 14 C 0.139 3.861 15 C -0.581 4.581 16 H 0.066 0.934 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.194 1.194 21 H -0.190 1.190 22 H -0.207 1.207 23 C -0.106 4.106 24 C -0.225 4.225 25 C -0.240 4.240 26 C -0.090 4.090 27 C -0.132 4.132 28 O -0.087 6.087 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.168 0.832 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.014 0.986 43 H 0.077 0.923 44 H 0.193 0.807 45 H 0.185 0.815 46 H 0.081 0.919 47 H 0.126 0.874 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.603 14.880 -16.276 24.919 hybrid contribution 0.699 -1.644 -0.674 1.909 sum -10.904 13.237 -16.950 24.112 Atomic orbital electron populations 1.22819 0.79961 1.03027 1.00768 1.87967 1.21040 1.28684 1.95547 1.22734 0.90618 0.85068 1.02037 1.20847 0.95412 0.96740 0.81052 0.82983 1.60595 1.17640 1.18289 1.33099 1.21485 0.89549 0.95523 0.96903 0.90819 1.22002 1.04238 0.92298 1.00984 1.21305 0.81872 0.86537 0.82150 1.90630 1.60468 1.37241 1.58818 1.48083 1.10721 1.27055 1.47817 1.22137 0.95481 0.88454 1.00613 1.18753 0.92273 0.86218 0.88875 1.21689 1.37559 1.05852 0.93039 0.93383 1.25842 0.96376 1.00650 0.96142 1.70055 1.45304 1.32109 1.09172 0.85386 0.78470 0.78390 0.78675 1.19396 1.18982 1.20683 1.23679 1.05704 0.80886 1.00326 1.21918 1.05943 1.01308 0.93372 1.21834 1.08234 0.91263 1.02661 1.23148 1.02688 0.98981 0.84161 1.20422 1.04326 0.86416 1.02024 1.84019 1.65696 1.23733 1.35218 0.92805 0.90062 0.93182 0.90442 0.90600 0.83158 0.89178 0.88492 0.93132 0.90093 0.91555 0.89183 0.95492 0.98631 0.92324 0.80670 0.81517 0.91866 0.87414 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -11.14 10.04 -148.98 -1.50 -12.64 16 3 C 0.07 1.47 5.76 71.98 0.41 1.88 16 4 C 0.17 3.87 2.67 44.17 0.12 3.99 16 5 H 0.15 2.29 6.87 -2.39 -0.02 2.27 16 6 N -0.66 -20.84 5.83 -477.17 -2.78 -23.62 16 7 C 0.08 2.42 2.05 44.17 0.09 2.51 16 8 H 0.07 2.13 6.79 -2.39 -0.02 2.12 16 9 C -0.14 -3.01 8.97 71.98 0.65 -2.36 16 10 C 0.49 22.02 7.09 87.66 0.62 22.65 16 11 O -0.59 -33.07 15.28 -3.01 -0.05 -33.12 16 12 N -0.61 -26.82 2.86 -851.14 -2.43 -29.26 16 13 C 0.07 2.28 8.79 127.77 1.12 3.40 16 14 C 0.26 14.60 5.16 85.64 0.44 15.04 16 15 C -0.54 -32.50 9.39 25.60 0.24 -32.26 16 16 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 17 C 0.01 0.53 5.46 84.65 0.46 0.99 16 18 N -0.93 -57.31 13.29 21.44 0.28 -57.02 16 19 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 23 C -0.05 -1.46 5.15 24.83 0.13 -1.34 16 24 C -0.21 -4.63 10.80 22.19 0.24 -4.39 16 25 C -0.22 -5.26 10.81 22.19 0.24 -5.02 16 26 C -0.04 -1.12 7.32 24.83 0.18 -0.94 16 27 C -0.08 -1.66 10.42 71.23 0.74 -0.92 16 28 O -0.19 -6.45 10.03 -2.54 -0.03 -6.47 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.35 14.12 6.94 -89.69 -0.62 13.49 16 35 H 0.09 1.65 4.77 -2.39 -0.01 1.64 16 36 H 0.10 1.42 7.10 -2.39 -0.02 1.40 16 37 H 0.05 1.30 8.13 -2.38 -0.02 1.28 16 38 H 0.08 1.96 7.11 -2.39 -0.02 1.94 16 39 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 40 H 0.09 2.15 5.93 -2.39 -0.01 2.14 16 41 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 42 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -83.87 393.61 2.80 -81.06 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.33 Total: 27.79 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 6.94 Total: 5.07 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -4.93 Total: -109.90 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.57 Total: -52.23 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -83.87 2.80 -81.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184729219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.400 kcal (2) G-P(sol) polarization free energy of solvation -83.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds