Wall clock time and date at job start Tue Mar 31 2020 14:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00280 * 2 1 4 4 C 1.52998 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46996 * 184.83629 * 4 3 2 6 6 N 1.46897 * 109.47451 * 64.83451 * 4 3 2 7 7 C 1.46895 * 111.00288 * 153.80457 * 6 4 3 8 8 H 1.08999 * 109.47018 * 35.00353 * 7 6 4 9 9 C 1.52997 * 109.47189 * 275.00252 * 7 6 4 10 10 C 1.50705 * 109.47071 * 154.99805 * 7 6 4 11 11 O 1.21275 * 120.00105 * 14.09409 * 10 7 6 12 12 N 1.34780 * 119.99511 * 194.09142 * 10 7 6 13 13 C 1.46495 * 120.00363 * 355.13326 * 12 10 7 14 14 C 1.46503 * 119.99495 * 175.12918 * 12 10 7 15 15 C 1.50706 * 109.46876 * 90.00426 * 14 12 10 16 16 H 1.07999 * 120.00116 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99933 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00059 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00015 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46995 * 90.00241 * 19 17 15 21 21 H 1.48493 * 109.47155 * 210.00243 * 19 17 15 22 22 H 1.48501 * 109.47276 * 330.00545 * 19 17 15 23 23 C 1.50700 * 109.46786 * 304.83584 * 4 3 2 24 24 C 1.34521 * 125.78707 * 259.99969 * 23 4 3 25 25 C 1.41383 * 106.84035 * 180.02562 * 24 23 4 26 26 C 1.34519 * 106.84101 * 0.02562 * 25 24 23 27 27 C 1.50700 * 125.79184 * 180.02562 * 26 25 24 28 28 O 1.34298 * 125.79234 * 79.69477 * 23 4 3 29 29 H 1.08994 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47330 * 300.00192 * 1 2 3 31 31 H 1.09008 * 109.47358 * 60.00050 * 1 2 3 32 32 H 1.09001 * 109.47074 * 60.00007 * 3 2 1 33 33 H 1.09001 * 109.47026 * 300.00223 * 3 2 1 34 34 H 1.00903 * 111.00140 * 277.76403 * 6 4 3 35 35 H 1.09001 * 109.47311 * 309.46720 * 9 7 6 36 36 H 1.08998 * 109.47370 * 69.46992 * 9 7 6 37 37 H 1.09007 * 109.46908 * 189.47385 * 9 7 6 38 38 H 1.09004 * 109.47158 * 90.02107 * 13 12 10 39 39 H 1.09000 * 109.47000 * 210.02211 * 13 12 10 40 40 H 1.09001 * 109.47106 * 330.02220 * 13 12 10 41 41 H 1.08998 * 109.47100 * 210.00173 * 14 12 10 42 42 H 1.09000 * 109.47422 * 330.00512 * 14 12 10 43 43 H 0.96998 * 120.00412 * 179.97438 * 18 17 15 44 44 H 1.08001 * 126.58134 * 359.96634 * 24 23 4 45 45 H 1.07998 * 126.58182 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.47158 * 89.99494 * 27 26 25 47 47 H 1.08997 * 109.46827 * 210.00070 * 27 26 25 48 48 H 1.09002 * 109.46898 * 329.99568 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1767 0.0860 6 7 3.9766 0.5591 -1.2544 7 6 5.3483 0.9633 -1.5903 8 1 5.9284 1.0763 -0.6744 9 6 5.3178 2.2954 -2.3422 10 6 5.9837 -0.0904 -2.4604 11 8 5.2959 -0.9434 -2.9800 12 7 7.3165 -0.0847 -2.6612 13 6 8.1338 1.0052 -2.1223 14 6 7.9478 -1.1685 -3.4182 15 6 7.9800 -0.8071 -4.8809 16 1 7.5707 0.1355 -5.2134 17 6 8.5310 -1.6801 -5.7948 18 7 8.5596 -1.3645 -7.0711 19 14 9.2383 -3.3107 -5.2198 20 1 8.1752 -4.3473 -5.2438 21 1 10.3453 -3.7159 -6.1226 22 1 9.7563 -3.1650 -3.8357 23 6 3.9725 0.3356 1.1652 24 6 4.4515 0.7935 2.3359 25 6 4.7343 -0.3389 3.1338 26 6 4.4118 -1.4211 2.4028 27 6 4.5442 -2.8554 2.8458 28 8 3.9445 -1.0062 1.2139 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8976 -0.4456 -1.2046 35 1 4.6053 2.2322 -3.1647 36 1 5.0162 3.0906 -1.6605 37 1 6.3103 2.5124 -2.7373 38 1 8.4701 0.7451 -1.1186 39 1 8.9991 1.1629 -2.7661 40 1 7.5401 1.9185 -2.0813 41 1 8.9658 -1.3179 -3.0584 42 1 7.3763 -2.0868 -3.2833 43 1 8.9475 -1.9785 -7.7140 44 1 4.5937 1.8277 2.6128 45 1 5.1328 -0.3357 4.1375 46 1 3.6212 -3.1723 3.3314 47 1 4.7342 -3.4875 1.9784 48 1 5.3731 -2.9436 3.5482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184729273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:48 Heat of formation + Delta-G solvation = -48.825440 kcal Electronic energy + Delta-G solvation = -28849.128299 eV Core-core repulsion = 24906.897908 eV Total energy + Delta-G solvation = -3942.230391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.63196 -39.51008 -38.13832 -36.10913 -34.90528 -33.19340 -32.90056 -32.28207 -30.95441 -28.72018 -27.91856 -26.82530 -26.09844 -25.70862 -23.76348 -22.29947 -21.79106 -21.29824 -19.96394 -18.59946 -17.32700 -16.92859 -16.70539 -16.40893 -16.13403 -15.86539 -15.62863 -14.96525 -14.91993 -14.43753 -14.38712 -14.00601 -13.52542 -13.27239 -13.14865 -13.10723 -12.92705 -12.82265 -12.61592 -12.43792 -12.29698 -12.19145 -12.05732 -11.91304 -11.68566 -11.53811 -11.45340 -11.24616 -11.14646 -10.76558 -10.50179 -10.12144 -9.90094 -9.73517 -9.50661 -8.89669 -8.59479 -8.55632 -8.29299 -7.67389 -6.05395 -4.03715 1.68483 2.53636 2.82437 3.31088 3.33645 3.36910 3.38989 3.68059 3.68861 4.22153 4.42350 4.45360 4.78313 4.89806 4.91727 4.96083 5.07575 5.17833 5.24462 5.26303 5.27505 5.29180 5.30651 5.32575 5.42524 5.45613 5.56187 5.57155 5.59158 5.74350 5.80017 5.83884 5.86389 5.93203 6.09595 6.15430 6.45952 6.46851 6.66203 6.84640 6.96610 7.06647 7.22780 7.35693 7.44154 7.64005 8.26329 8.50168 8.95582 9.01013 9.54922 11.08106 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.003533 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.158140 B = 7922.973241 C = 8503.890770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.074 3.926 4 C 0.171 3.829 5 H 0.118 0.882 6 N -0.654 5.654 7 C 0.065 3.935 8 H 0.063 0.937 9 C -0.143 4.143 10 C 0.505 3.495 11 O -0.525 6.525 12 N -0.596 5.596 13 C 0.071 3.929 14 C 0.217 3.783 15 C -0.526 4.526 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.031 4.031 24 C -0.211 4.211 25 C -0.218 4.218 26 C -0.012 4.012 27 C -0.075 4.075 28 O -0.154 6.154 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.368 0.632 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 7.069 22.445 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.004 4.004 4 C 0.060 3.940 5 H 0.136 0.864 6 N -0.288 5.288 7 C -0.048 4.048 8 H 0.080 0.920 9 C -0.201 4.201 10 C 0.290 3.710 11 O -0.400 6.400 12 N -0.328 5.328 13 C -0.072 4.072 14 C 0.096 3.904 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.084 4.084 24 C -0.231 4.231 25 C -0.237 4.237 26 C -0.063 4.063 27 C -0.131 4.131 28 O -0.049 6.049 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.192 0.808 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.162 0.838 45 H 0.162 0.838 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.825 6.619 21.310 24.801 hybrid contribution 0.874 -0.883 1.042 1.622 sum -9.951 5.735 22.351 25.130 Atomic orbital electron populations 1.22693 0.81377 1.02640 0.99557 1.87987 1.19253 1.26971 1.95282 1.22609 0.91487 0.85694 1.00560 1.20520 0.94486 0.95845 0.83103 0.86406 1.60470 1.21497 1.17161 1.29706 1.21541 0.89510 0.95946 0.97811 0.91952 1.21927 1.03282 0.93914 1.00932 1.20248 0.82516 0.85980 0.82230 1.90691 1.61208 1.38953 1.49195 1.47781 1.06139 1.25236 1.53683 1.21934 0.96898 0.90233 0.98175 1.19659 0.92434 0.86114 0.92170 1.21324 1.39438 1.06146 0.89543 0.90692 1.24853 0.95516 0.97922 0.94714 1.69894 1.45532 1.36890 1.01309 0.86862 0.79191 0.84802 0.78890 1.19906 1.21068 1.19154 1.23264 1.04582 0.81414 0.99099 1.21537 1.07306 0.99964 0.94262 1.21485 1.08966 0.91615 1.01606 1.22480 1.02094 0.97202 0.84483 1.20295 1.03075 0.87820 1.01908 1.84010 1.64619 1.21970 1.34350 0.89833 0.94622 0.93980 0.92987 0.91318 0.80821 0.90769 0.92322 0.90835 0.93896 0.90446 0.91110 0.95272 0.94793 0.92600 0.83752 0.83835 0.90231 0.90375 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -4.92 10.02 -35.23 -0.35 -5.28 16 3 C 0.07 0.80 5.76 37.16 0.21 1.01 16 4 C 0.17 2.03 2.66 -68.87 -0.18 1.85 16 5 H 0.12 1.09 7.20 -51.93 -0.37 0.72 16 6 N -0.65 -10.04 5.81 -102.18 -0.59 -10.63 16 7 C 0.07 1.01 2.03 -68.87 -0.14 0.87 16 8 H 0.06 0.87 7.26 -51.93 -0.38 0.50 16 9 C -0.14 -1.90 8.94 37.16 0.33 -1.57 16 10 C 0.50 10.68 6.87 -10.98 -0.08 10.60 16 11 O -0.52 -13.48 15.53 5.56 0.09 -13.39 16 12 N -0.60 -12.61 2.86 -182.95 -0.52 -13.14 16 13 C 0.07 1.12 9.84 59.84 0.59 1.71 16 14 C 0.22 5.45 4.19 -5.19 -0.02 5.43 16 15 C -0.53 -15.41 9.94 -34.44 -0.34 -15.76 16 16 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 19 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.03 -0.41 5.38 -35.62 -0.19 -0.60 16 24 C -0.21 -2.44 10.80 -39.70 -0.43 -2.87 16 25 C -0.22 -2.51 10.81 -39.70 -0.43 -2.94 16 26 C -0.01 -0.15 7.32 -35.62 -0.26 -0.41 16 27 C -0.07 -0.68 10.42 36.01 0.38 -0.31 16 28 O -0.15 -2.33 9.94 5.71 0.06 -2.27 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.37 6.75 6.97 -39.29 -0.27 6.48 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.58 7.59 -51.93 -0.39 0.19 16 37 H 0.07 0.98 5.47 -51.93 -0.28 0.70 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.07 0.93 4.24 -51.93 -0.22 0.71 16 41 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 42 H 0.03 0.91 6.92 -51.93 -0.36 0.55 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -36.65 392.54 -6.59 -43.24 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.74 Total: 5.06 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.45 Total: 0.51 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.34 Total: -51.07 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.21 Total: -20.94 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.65 -6.59 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184729273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.587 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds