Wall clock time and date at job start Tue Mar 31 2020 14:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00280 * 2 1 4 4 C 1.52998 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46996 * 184.83629 * 4 3 2 6 6 N 1.46897 * 109.47451 * 64.83451 * 4 3 2 7 7 C 1.46895 * 111.00288 * 153.80457 * 6 4 3 8 8 H 1.08999 * 109.47018 * 35.00353 * 7 6 4 9 9 C 1.52997 * 109.47189 * 275.00252 * 7 6 4 10 10 C 1.50705 * 109.47071 * 154.99805 * 7 6 4 11 11 O 1.21275 * 120.00105 * 14.09409 * 10 7 6 12 12 N 1.34780 * 119.99511 * 194.09142 * 10 7 6 13 13 C 1.46495 * 120.00363 * 355.13326 * 12 10 7 14 14 C 1.46503 * 119.99495 * 175.12918 * 12 10 7 15 15 C 1.50706 * 109.46876 * 90.00426 * 14 12 10 16 16 H 1.07999 * 120.00116 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99933 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00059 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00015 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46995 * 90.00241 * 19 17 15 21 21 H 1.48493 * 109.47155 * 210.00243 * 19 17 15 22 22 H 1.48501 * 109.47276 * 330.00545 * 19 17 15 23 23 C 1.50700 * 109.46786 * 304.83584 * 4 3 2 24 24 C 1.34521 * 125.78707 * 259.99969 * 23 4 3 25 25 C 1.41383 * 106.84035 * 180.02562 * 24 23 4 26 26 C 1.34519 * 106.84101 * 0.02562 * 25 24 23 27 27 C 1.50700 * 125.79184 * 180.02562 * 26 25 24 28 28 O 1.34298 * 125.79234 * 79.69477 * 23 4 3 29 29 H 1.08994 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47330 * 300.00192 * 1 2 3 31 31 H 1.09008 * 109.47358 * 60.00050 * 1 2 3 32 32 H 1.09001 * 109.47074 * 60.00007 * 3 2 1 33 33 H 1.09001 * 109.47026 * 300.00223 * 3 2 1 34 34 H 1.00903 * 111.00140 * 277.76403 * 6 4 3 35 35 H 1.09001 * 109.47311 * 309.46720 * 9 7 6 36 36 H 1.08998 * 109.47370 * 69.46992 * 9 7 6 37 37 H 1.09007 * 109.46908 * 189.47385 * 9 7 6 38 38 H 1.09004 * 109.47158 * 90.02107 * 13 12 10 39 39 H 1.09000 * 109.47000 * 210.02211 * 13 12 10 40 40 H 1.09001 * 109.47106 * 330.02220 * 13 12 10 41 41 H 1.08998 * 109.47100 * 210.00173 * 14 12 10 42 42 H 1.09000 * 109.47422 * 330.00512 * 14 12 10 43 43 H 0.96998 * 120.00412 * 179.97438 * 18 17 15 44 44 H 1.08001 * 126.58134 * 359.96634 * 24 23 4 45 45 H 1.07998 * 126.58182 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.47158 * 89.99494 * 27 26 25 47 47 H 1.08997 * 109.46827 * 210.00070 * 27 26 25 48 48 H 1.09002 * 109.46898 * 329.99568 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1767 0.0860 6 7 3.9766 0.5591 -1.2544 7 6 5.3483 0.9633 -1.5903 8 1 5.9284 1.0763 -0.6744 9 6 5.3178 2.2954 -2.3422 10 6 5.9837 -0.0904 -2.4604 11 8 5.2959 -0.9434 -2.9800 12 7 7.3165 -0.0847 -2.6612 13 6 8.1338 1.0052 -2.1223 14 6 7.9478 -1.1685 -3.4182 15 6 7.9800 -0.8071 -4.8809 16 1 7.5707 0.1355 -5.2134 17 6 8.5310 -1.6801 -5.7948 18 7 8.5596 -1.3645 -7.0711 19 14 9.2383 -3.3107 -5.2198 20 1 8.1752 -4.3473 -5.2438 21 1 10.3453 -3.7159 -6.1226 22 1 9.7563 -3.1650 -3.8357 23 6 3.9725 0.3356 1.1652 24 6 4.4515 0.7935 2.3359 25 6 4.7343 -0.3389 3.1338 26 6 4.4118 -1.4211 2.4028 27 6 4.5442 -2.8554 2.8458 28 8 3.9445 -1.0062 1.2139 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8976 -0.4456 -1.2046 35 1 4.6053 2.2322 -3.1647 36 1 5.0162 3.0906 -1.6605 37 1 6.3103 2.5124 -2.7373 38 1 8.4701 0.7451 -1.1186 39 1 8.9991 1.1629 -2.7661 40 1 7.5401 1.9185 -2.0813 41 1 8.9658 -1.3179 -3.0584 42 1 7.3763 -2.0868 -3.2833 43 1 8.9475 -1.9785 -7.7140 44 1 4.5937 1.8277 2.6128 45 1 5.1328 -0.3357 4.1375 46 1 3.6212 -3.1723 3.3314 47 1 4.7342 -3.4875 1.9784 48 1 5.3731 -2.9436 3.5482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184729273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:47 Heat of formation + Delta-G solvation = -76.447864 kcal Electronic energy + Delta-G solvation = -28850.326097 eV Core-core repulsion = 24906.897908 eV Total energy + Delta-G solvation = -3943.428189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.52600 -41.04642 -39.07813 -37.26568 -36.64276 -34.78643 -34.07408 -33.61237 -31.91951 -30.38178 -29.14499 -27.66334 -27.50312 -26.53492 -25.41237 -23.59573 -22.67258 -22.57401 -20.85306 -20.11862 -19.15239 -18.44953 -17.88296 -17.49556 -17.18486 -17.09319 -16.63979 -16.45089 -16.01220 -15.78463 -15.76152 -15.42902 -14.75874 -14.46046 -14.35669 -14.01936 -13.94387 -13.85352 -13.74293 -13.65204 -13.56589 -13.44528 -13.40892 -13.08891 -12.94406 -12.76016 -12.66998 -12.46767 -12.44898 -12.18729 -12.09357 -11.99316 -11.75481 -10.84595 -10.76302 -10.59639 -10.51397 -9.68276 -9.41466 -9.17169 -8.35025 -6.39899 0.79612 1.30060 1.34830 1.42811 1.69925 1.72714 1.99184 2.22227 2.29436 2.91440 2.98943 3.07417 3.54776 3.64295 3.96680 4.04676 4.08402 4.17380 4.23409 4.30994 4.32897 4.48005 4.53653 4.56287 4.58244 4.61388 4.64967 4.66106 4.74092 4.76840 4.84014 4.85624 4.86211 4.90238 4.93375 4.97528 5.06584 5.29300 5.36535 5.43662 5.56891 5.67357 5.83952 6.08478 6.22796 6.28125 6.39828 6.60965 6.66190 7.19822 7.37213 8.82065 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.003533 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.158140 B = 7922.973241 C = 8503.890770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.072 3.928 4 C 0.170 3.830 5 H 0.151 0.849 6 N -0.665 5.665 7 C 0.081 3.919 8 H 0.088 0.912 9 C -0.138 4.138 10 C 0.492 3.508 11 O -0.584 6.584 12 N -0.604 5.604 13 C 0.064 3.936 14 C 0.225 3.775 15 C -0.534 4.534 16 H 0.029 0.971 17 C 0.011 3.989 18 N -0.944 5.944 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.272 1.272 22 H -0.239 1.239 23 C -0.052 4.052 24 C -0.205 4.205 25 C -0.221 4.221 26 C -0.037 4.037 27 C -0.074 4.074 28 O -0.189 6.189 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.348 0.652 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.013 0.987 43 H 0.269 0.731 44 H 0.174 0.826 45 H 0.167 0.833 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 8.337 25.824 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.330 6.330 3 C -0.005 4.005 4 C 0.061 3.939 5 H 0.168 0.832 6 N -0.298 5.298 7 C -0.032 4.032 8 H 0.106 0.894 9 C -0.196 4.196 10 C 0.280 3.720 11 O -0.464 6.464 12 N -0.336 5.336 13 C -0.077 4.077 14 C 0.102 3.898 15 C -0.573 4.573 16 H 0.047 0.953 17 C -0.187 4.187 18 N -0.584 5.584 19 Si 0.770 3.230 20 H -0.204 1.204 21 H -0.197 1.197 22 H -0.162 1.162 23 C -0.104 4.104 24 C -0.225 4.225 25 C -0.240 4.240 26 C -0.087 4.087 27 C -0.131 4.131 28 O -0.085 6.085 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.191 0.809 45 H 0.185 0.815 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.035 7.960 24.733 27.853 hybrid contribution 0.558 -1.207 -0.016 1.330 sum -9.477 6.753 24.717 27.320 Atomic orbital electron populations 1.22812 0.80060 1.03056 1.00667 1.87954 1.20919 1.28579 1.95530 1.22738 0.90856 0.85089 1.01837 1.20802 0.95291 0.96645 0.81204 0.83183 1.60524 1.21160 1.15861 1.32224 1.21517 0.89689 0.94461 0.97525 0.89410 1.21945 1.02745 0.93879 1.01016 1.21380 0.82204 0.86356 0.82046 1.90650 1.62529 1.41512 1.51720 1.47910 1.06943 1.25614 1.53087 1.22259 0.96477 0.89760 0.99252 1.19332 0.93384 0.86872 0.90198 1.21534 1.38963 1.04556 0.92238 0.95270 1.25842 0.95918 1.02243 0.94653 1.70044 1.46856 1.38715 1.02831 0.85729 0.78432 0.78846 0.80011 1.20418 1.19690 1.16204 1.23536 1.05733 0.80987 1.00152 1.21915 1.05860 1.01308 0.93394 1.21861 1.08384 0.91254 1.02501 1.23168 1.02402 0.98936 0.84208 1.20426 1.04632 0.86119 1.01882 1.83997 1.65524 1.23316 1.35711 0.89915 0.92813 0.93454 0.90485 0.91020 0.83151 0.93150 0.87661 0.90871 0.90642 0.91157 0.88220 0.93101 0.96911 0.92244 0.80894 0.81511 0.88967 0.91637 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -10.63 10.02 -148.98 -1.49 -12.12 16 3 C 0.07 1.42 5.76 71.98 0.41 1.83 16 4 C 0.17 3.66 2.66 44.17 0.12 3.78 16 5 H 0.15 2.12 7.20 -2.39 -0.02 2.10 16 6 N -0.67 -20.08 5.81 -477.18 -2.77 -22.85 16 7 C 0.08 2.39 2.03 44.17 0.09 2.48 16 8 H 0.09 2.16 7.26 -2.39 -0.02 2.15 16 9 C -0.14 -3.37 8.94 71.98 0.64 -2.72 16 10 C 0.49 21.11 6.87 87.66 0.60 21.71 16 11 O -0.58 -31.52 15.53 -3.02 -0.05 -31.57 16 12 N -0.60 -25.47 2.86 -851.12 -2.43 -27.90 16 13 C 0.06 1.87 9.84 127.77 1.26 3.13 16 14 C 0.22 11.37 4.19 85.63 0.36 11.73 16 15 C -0.53 -32.39 9.94 25.60 0.25 -32.14 16 16 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 17 C 0.01 0.69 5.47 84.66 0.46 1.16 16 18 N -0.94 -60.90 13.96 21.45 0.30 -60.60 16 19 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 23 C -0.05 -1.28 5.38 24.83 0.13 -1.14 16 24 C -0.21 -4.09 10.80 22.19 0.24 -3.85 16 25 C -0.22 -4.53 10.81 22.19 0.24 -4.29 16 26 C -0.04 -0.90 7.32 24.83 0.18 -0.72 16 27 C -0.07 -1.30 10.42 71.24 0.74 -0.55 16 28 O -0.19 -5.67 9.94 -2.50 -0.02 -5.70 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.35 13.21 6.97 -89.69 -0.63 12.59 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.60 7.59 -2.39 -0.02 1.58 16 37 H 0.07 1.78 5.47 -2.38 -0.01 1.77 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 39 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 40 H 0.10 2.32 4.24 -2.39 -0.01 2.31 16 41 H 0.05 2.35 7.13 -2.39 -0.02 2.33 16 42 H 0.01 0.70 6.92 -2.39 -0.02 0.69 16 43 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -85.88 392.54 2.68 -83.20 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.28 Total: 27.79 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.99 Total: 2.23 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.90 Total: -111.36 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -1.56 Total: -49.38 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -85.88 2.68 -83.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184729273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.754 kcal (2) G-P(sol) polarization free energy of solvation -85.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds