Wall clock time and date at job start Tue Mar 31 2020 14:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47006 * 305.00143 * 5 4 3 7 7 N 1.46495 * 109.46923 * 65.00014 * 5 4 3 8 8 C 1.34782 * 120.00479 * 274.99833 * 7 5 4 9 9 O 1.21586 * 119.99292 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00408 * 179.97438 * 8 7 5 11 11 C 1.46498 * 119.99866 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46924 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47053 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46923 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99970 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99828 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00067 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99887 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46876 * 90.00672 * 18 16 14 20 20 H 1.48500 * 109.47205 * 209.99689 * 18 16 14 21 21 H 1.48494 * 109.47429 * 330.00400 * 18 16 14 22 22 C 1.50696 * 109.47212 * 185.00284 * 5 4 3 23 23 C 1.34515 * 125.79156 * 99.71816 * 22 5 4 24 24 C 1.41390 * 106.83950 * 179.88917 * 23 22 5 25 25 C 1.34512 * 106.84064 * 0.36794 * 24 23 22 26 26 C 1.50699 * 125.78638 * 179.74522 * 25 24 23 27 27 O 1.34303 * 108.42041 * 359.77787 * 25 24 23 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 32 32 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 33 33 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 34 34 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 35 35 H 0.97000 * 120.00088 * 95.00416 * 7 5 4 36 36 H 0.97006 * 119.99464 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47191 * 299.99898 * 11 10 8 38 38 H 1.08998 * 109.47032 * 60.00202 * 11 10 8 39 39 H 1.09004 * 109.47372 * 300.00475 * 12 11 10 40 40 H 1.09005 * 109.47005 * 59.99890 * 12 11 10 41 41 H 1.08997 * 109.47086 * 299.99818 * 13 12 11 42 42 H 1.08997 * 109.47087 * 60.00589 * 13 12 11 43 43 H 0.97001 * 120.00204 * 179.97438 * 17 16 14 44 44 H 1.08001 * 126.57692 * 0.02562 * 23 22 5 45 45 H 1.07997 * 126.57219 * 180.12222 * 24 23 22 46 46 H 1.09000 * 109.46829 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47706 * 300.00888 * 26 25 24 48 48 H 1.09007 * 109.46661 * 60.00713 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7673 3.1535 -0.8423 7 7 3.8226 3.2667 1.2512 8 6 2.6538 3.9281 1.3656 9 8 1.8774 3.9563 0.4304 10 7 2.3453 4.5571 2.5169 11 6 1.0746 5.2755 2.6413 12 6 0.9737 5.8952 4.0366 13 6 -0.3537 6.6449 4.1667 14 6 -0.4528 7.2558 5.5408 15 1 0.3507 7.1230 6.2501 16 6 -1.5694 7.9843 5.8924 17 7 -1.6558 8.5179 7.0914 18 14 -2.9589 8.2146 4.6653 19 1 -3.9391 7.1090 4.8142 20 1 -3.6342 9.5124 4.9201 21 1 -2.4081 8.2055 3.2863 22 6 5.6551 2.4656 -0.1233 23 6 6.3663 2.6255 -1.2538 24 6 7.7249 2.4314 -0.9140 25 6 7.7620 2.1563 0.4022 26 6 9.0029 1.8711 1.2083 27 8 6.5054 2.1783 0.8759 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 3.8567 0.6439 0.8908 34 1 3.8575 0.6436 -0.8892 35 1 4.4420 3.2438 1.9974 36 1 2.9647 4.5342 3.2632 37 1 1.0278 6.0636 1.8899 38 1 0.2483 4.5807 2.4913 39 1 1.0208 5.1073 4.7884 40 1 1.8001 6.5900 4.1862 41 1 -0.4012 7.4327 3.4150 42 1 -1.1798 5.9497 4.0174 43 1 -2.4411 9.0307 7.3386 44 1 5.9747 2.8598 -2.2327 45 1 8.5703 2.4887 -1.5836 46 1 8.7268 1.6831 2.2459 47 1 9.5066 0.9941 0.8020 48 1 9.6727 2.7298 1.1601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272367763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:13 Heat of formation + Delta-G solvation = -77.566289 kcal Electronic energy + Delta-G solvation = -27232.885437 eV Core-core repulsion = 23289.408749 eV Total energy + Delta-G solvation = -3943.476688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.99916 -40.23087 -37.96595 -36.38338 -35.22245 -33.57136 -33.41510 -32.43233 -31.74224 -31.00195 -28.40023 -26.96891 -26.40726 -24.42016 -22.95639 -22.22237 -21.80203 -20.91327 -20.43340 -20.24332 -18.48292 -17.40993 -16.77789 -16.67646 -16.47599 -16.32662 -15.64014 -15.37199 -15.16091 -14.78971 -14.44188 -14.29540 -14.04760 -13.85675 -13.59382 -13.47519 -13.21857 -13.13794 -12.97572 -12.70133 -12.68572 -12.24355 -12.04274 -11.91781 -11.72710 -11.39624 -11.17476 -11.08821 -10.90125 -10.33848 -10.22051 -10.04003 -9.84991 -9.71723 -9.68122 -9.39265 -9.24046 -8.78421 -8.64583 -8.56524 -6.07273 -4.06046 1.28646 2.20325 2.43366 2.69042 3.18932 3.30383 3.38076 3.42212 3.60851 4.18829 4.23669 4.43451 4.52822 4.66760 4.78715 4.84634 4.94104 5.03010 5.10733 5.18180 5.26805 5.27481 5.30305 5.38416 5.45065 5.51489 5.52261 5.58167 5.62354 5.66102 5.74607 5.83268 5.88683 6.00582 6.13210 6.24594 6.33740 6.44337 6.64536 6.78845 6.81073 6.91329 7.08678 7.21719 7.35125 7.74523 7.98878 8.48936 8.57357 8.96564 9.54905 11.05961 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.002461 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.482926 B =11376.493913 C =12967.532319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.401 6.401 3 C 0.068 3.932 4 C -0.128 4.128 5 C 0.257 3.743 6 H 0.119 0.881 7 N -0.747 5.747 8 C 0.703 3.297 9 O -0.590 6.590 10 N -0.739 5.739 11 C 0.133 3.867 12 C -0.113 4.113 13 C -0.010 4.010 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.023 4.023 23 C -0.188 4.188 24 C -0.213 4.213 25 C -0.009 4.009 26 C -0.075 4.075 27 O -0.170 6.170 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.396 0.604 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.263 0.737 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.216 -16.819 -16.546 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.320 6.320 3 C -0.009 4.009 4 C -0.167 4.167 5 C 0.151 3.849 6 H 0.136 0.864 7 N -0.404 5.404 8 C 0.404 3.596 9 O -0.469 6.469 10 N -0.393 5.393 11 C 0.010 3.990 12 C -0.151 4.151 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.073 4.073 23 C -0.208 4.208 24 C -0.232 4.232 25 C -0.059 4.059 26 C -0.132 4.132 27 O -0.067 6.067 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.230 0.770 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.169 0.831 45 H 0.167 0.833 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.368 -16.871 -16.987 30.176 hybrid contribution -0.338 0.474 -0.001 0.582 sum 18.030 -16.397 -16.988 29.708 Atomic orbital electron populations 1.22687 0.80833 1.02256 1.00360 1.87767 1.19905 1.28712 1.95613 1.22617 0.92385 0.83783 1.02070 1.22001 0.94744 0.95888 1.04086 1.19120 0.83607 0.93346 0.88801 0.86384 1.45181 1.20960 1.57459 1.16787 1.15919 0.81582 0.78402 0.83741 1.90918 1.50252 1.66805 1.38894 1.45349 1.23172 1.56421 1.14356 1.21531 0.83085 0.95080 0.99295 1.21713 1.01007 0.99498 0.92926 1.19497 0.92041 0.95247 0.98063 1.21095 1.05044 1.32310 0.97544 0.91022 1.25032 0.98279 0.95075 0.95120 1.69912 1.29540 1.35330 1.19406 0.86775 0.82470 0.77605 0.82442 1.20251 1.21373 1.18874 1.22263 0.91693 1.06478 0.86877 1.21578 0.93070 1.06917 0.99212 1.21558 0.97635 1.08724 0.95259 1.22500 0.84334 1.04896 0.94150 1.20334 0.90251 1.03026 0.99550 1.83931 1.15958 1.69299 1.37524 0.93957 0.94066 0.89899 0.92436 0.92281 0.90540 0.89876 0.76505 0.77013 0.91854 0.91960 0.92139 0.92096 0.96288 0.96739 0.92692 0.83100 0.83306 0.90441 0.89598 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.49 16 2 O -0.40 -5.23 10.70 -35.23 -0.38 -5.61 16 3 C 0.07 0.85 4.54 37.16 0.17 1.02 16 4 C -0.13 -1.33 5.24 -26.73 -0.14 -1.47 16 5 C 0.26 2.60 2.71 -69.09 -0.19 2.41 16 6 H 0.12 1.26 7.57 -51.93 -0.39 0.87 16 7 N -0.75 -8.02 5.03 -59.82 -0.30 -8.32 16 8 C 0.70 9.72 7.13 -86.92 -0.62 9.10 16 9 O -0.59 -9.90 13.48 5.29 0.07 -9.82 16 10 N -0.74 -9.91 5.56 -65.23 -0.36 -10.27 16 11 C 0.13 2.16 5.67 -4.04 -0.02 2.14 16 12 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 22 C -0.02 -0.22 6.12 -35.63 -0.22 -0.44 16 23 C -0.19 -1.67 10.80 -39.70 -0.43 -2.10 16 24 C -0.21 -1.73 10.81 -39.70 -0.43 -2.16 16 25 C -0.01 -0.07 7.32 -35.63 -0.26 -0.33 16 26 C -0.08 -0.35 10.42 36.00 0.38 0.02 16 27 O -0.17 -1.67 10.31 5.70 0.06 -1.61 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.75 7.84 -51.93 -0.41 0.35 16 32 H 0.06 0.85 5.65 -51.93 -0.29 0.56 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.40 3.62 8.33 -40.82 -0.34 3.28 16 36 H 0.40 4.34 8.49 -40.82 -0.35 4.00 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 42 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -33.72 396.24 -8.22 -41.94 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.05 Total: 3.69 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.33 Total: -6.04 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.11 Total: -45.51 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.25 Total: -17.04 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.72 -8.22 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272367763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.624 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds