Wall clock time and date at job start Tue Mar 31 2020 14:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47006 * 305.00143 * 5 4 3 7 7 N 1.46495 * 109.46923 * 65.00014 * 5 4 3 8 8 C 1.34782 * 120.00479 * 274.99833 * 7 5 4 9 9 O 1.21586 * 119.99292 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00408 * 179.97438 * 8 7 5 11 11 C 1.46498 * 119.99866 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46924 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47053 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46923 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99970 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99828 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00067 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99887 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46876 * 90.00672 * 18 16 14 20 20 H 1.48500 * 109.47205 * 209.99689 * 18 16 14 21 21 H 1.48494 * 109.47429 * 330.00400 * 18 16 14 22 22 C 1.50696 * 109.47212 * 185.00284 * 5 4 3 23 23 C 1.34515 * 125.79156 * 99.71816 * 22 5 4 24 24 C 1.41390 * 106.83950 * 179.88917 * 23 22 5 25 25 C 1.34512 * 106.84064 * 0.36794 * 24 23 22 26 26 C 1.50699 * 125.78638 * 179.74522 * 25 24 23 27 27 O 1.34303 * 108.42041 * 359.77787 * 25 24 23 28 28 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 32 32 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 33 33 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 34 34 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 35 35 H 0.97000 * 120.00088 * 95.00416 * 7 5 4 36 36 H 0.97006 * 119.99464 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47191 * 299.99898 * 11 10 8 38 38 H 1.08998 * 109.47032 * 60.00202 * 11 10 8 39 39 H 1.09004 * 109.47372 * 300.00475 * 12 11 10 40 40 H 1.09005 * 109.47005 * 59.99890 * 12 11 10 41 41 H 1.08997 * 109.47086 * 299.99818 * 13 12 11 42 42 H 1.08997 * 109.47087 * 60.00589 * 13 12 11 43 43 H 0.97001 * 120.00204 * 179.97438 * 17 16 14 44 44 H 1.08001 * 126.57692 * 0.02562 * 23 22 5 45 45 H 1.07997 * 126.57219 * 180.12222 * 24 23 22 46 46 H 1.09000 * 109.46829 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47706 * 300.00888 * 26 25 24 48 48 H 1.09007 * 109.46661 * 60.00713 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7673 3.1535 -0.8423 7 7 3.8226 3.2667 1.2512 8 6 2.6538 3.9281 1.3656 9 8 1.8774 3.9563 0.4304 10 7 2.3453 4.5571 2.5169 11 6 1.0746 5.2755 2.6413 12 6 0.9737 5.8952 4.0366 13 6 -0.3537 6.6449 4.1667 14 6 -0.4528 7.2558 5.5408 15 1 0.3507 7.1230 6.2501 16 6 -1.5694 7.9843 5.8924 17 7 -1.6558 8.5179 7.0914 18 14 -2.9589 8.2146 4.6653 19 1 -3.9391 7.1090 4.8142 20 1 -3.6342 9.5124 4.9201 21 1 -2.4081 8.2055 3.2863 22 6 5.6551 2.4656 -0.1233 23 6 6.3663 2.6255 -1.2538 24 6 7.7249 2.4314 -0.9140 25 6 7.7620 2.1563 0.4022 26 6 9.0029 1.8711 1.2083 27 8 6.5054 2.1783 0.8759 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 3.8567 0.6439 0.8908 34 1 3.8575 0.6436 -0.8892 35 1 4.4420 3.2438 1.9974 36 1 2.9647 4.5342 3.2632 37 1 1.0278 6.0636 1.8899 38 1 0.2483 4.5807 2.4913 39 1 1.0208 5.1073 4.7884 40 1 1.8001 6.5900 4.1862 41 1 -0.4012 7.4327 3.4150 42 1 -1.1798 5.9497 4.0174 43 1 -2.4411 9.0307 7.3386 44 1 5.9747 2.8598 -2.2327 45 1 8.5703 2.4887 -1.5836 46 1 8.7268 1.6831 2.2459 47 1 9.5066 0.9941 0.8020 48 1 9.6727 2.7298 1.1601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272367763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:12 Heat of formation + Delta-G solvation = -101.061624 kcal Electronic energy + Delta-G solvation = -27233.904271 eV Core-core repulsion = 23289.408749 eV Total energy + Delta-G solvation = -3944.495522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.64758 -41.29603 -38.94726 -37.48055 -36.49891 -35.16330 -34.18053 -33.68534 -32.72262 -32.19647 -29.35944 -28.46382 -27.20429 -25.33221 -24.48493 -22.95175 -22.70901 -22.22910 -21.66583 -21.06590 -19.54290 -18.95888 -18.16041 -17.68388 -17.33476 -17.10875 -16.67697 -16.57482 -16.24462 -16.03696 -15.69130 -15.49472 -15.27577 -14.83201 -14.76881 -14.26736 -14.06642 -13.82028 -13.77376 -13.73995 -13.71387 -13.63347 -13.38685 -12.74944 -12.73212 -12.69433 -12.53855 -12.28349 -12.13108 -11.88947 -11.77305 -11.58856 -11.33029 -11.28871 -10.86177 -10.75955 -10.68118 -10.42560 -9.88673 -9.28367 -8.29159 -6.33051 0.62327 1.37198 1.38901 1.50187 1.50915 1.72939 1.82602 2.10280 2.36657 2.74235 3.06662 3.23056 3.50164 3.88288 3.99198 4.01519 4.09965 4.11384 4.22416 4.24532 4.31568 4.45232 4.51770 4.53508 4.55898 4.59768 4.75241 4.77497 4.81615 4.84864 4.88519 4.90152 4.91458 4.99227 5.03985 5.05746 5.23150 5.33406 5.41564 5.51849 5.56799 5.60496 5.65389 5.91083 6.14718 6.16617 6.27779 6.75029 6.99720 7.31749 7.49882 8.87287 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.002461 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.482926 B =11376.493913 C =12967.532319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.414 6.414 3 C 0.073 3.927 4 C -0.119 4.119 5 C 0.263 3.737 6 H 0.113 0.887 7 N -0.734 5.734 8 C 0.703 3.297 9 O -0.619 6.619 10 N -0.733 5.733 11 C 0.149 3.851 12 C -0.100 4.100 13 C -0.011 4.011 14 C -0.530 4.530 15 H 0.036 0.964 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.246 1.246 22 C -0.040 4.040 23 C -0.191 4.191 24 C -0.225 4.225 25 C -0.014 4.014 26 C -0.075 4.075 27 O -0.183 6.183 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.410 0.590 36 H 0.409 0.591 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.020 0.980 43 H 0.266 0.734 44 H 0.164 0.836 45 H 0.169 0.831 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.245 -17.821 -18.320 32.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.333 6.333 3 C -0.003 4.003 4 C -0.158 4.158 5 C 0.158 3.842 6 H 0.130 0.870 7 N -0.391 5.391 8 C 0.403 3.597 9 O -0.500 6.500 10 N -0.388 5.388 11 C 0.024 3.976 12 C -0.138 4.138 13 C -0.049 4.049 14 C -0.568 4.568 15 H 0.055 0.945 16 C -0.193 4.193 17 N -0.592 5.592 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.170 1.170 22 C -0.090 4.090 23 C -0.210 4.210 24 C -0.243 4.243 25 C -0.064 4.064 26 C -0.131 4.131 27 O -0.081 6.081 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.245 0.755 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.182 0.818 45 H 0.187 0.813 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.448 -17.899 -18.755 32.409 hybrid contribution -0.547 0.746 0.601 1.103 sum 18.901 -17.153 -18.154 31.322 Atomic orbital electron populations 1.22855 0.79821 1.03719 1.00267 1.87751 1.21143 1.28862 1.95592 1.22530 0.93686 0.83454 1.00640 1.21937 0.93199 0.96179 1.04505 1.19038 0.84275 0.92856 0.88069 0.86978 1.45060 1.20021 1.56492 1.17481 1.15972 0.82013 0.78421 0.83252 1.90900 1.51376 1.67867 1.39895 1.45094 1.22610 1.56178 1.14943 1.21147 0.84198 0.94860 0.97374 1.21478 0.98604 0.99245 0.94487 1.19457 0.94823 0.95633 0.95022 1.21469 1.03942 1.32216 0.99199 0.94516 1.25999 1.01357 0.94896 0.97074 1.70061 1.30702 1.36705 1.21702 0.85693 0.78964 0.77749 0.80478 1.19240 1.21097 1.16989 1.22113 0.91325 1.08236 0.87362 1.21890 0.93594 1.05984 0.99574 1.21879 0.97914 1.08844 0.95710 1.23219 0.84550 1.03820 0.94835 1.20508 0.89017 1.04348 0.99260 1.83918 1.16672 1.69647 1.37854 0.94621 0.93580 0.87730 0.93275 0.94260 0.90733 0.88752 0.75371 0.75489 0.92444 0.92488 0.91870 0.91837 0.96007 0.96136 0.92528 0.81844 0.81332 0.90261 0.87942 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -10.55 10.70 -148.98 -1.59 -12.14 16 3 C 0.07 1.83 4.54 71.98 0.33 2.15 16 4 C -0.12 -2.39 5.24 30.59 0.16 -2.23 16 5 C 0.26 5.12 2.71 44.25 0.12 5.24 16 6 H 0.11 2.34 7.57 -2.39 -0.02 2.33 16 7 N -0.73 -15.10 5.03 -461.42 -2.32 -17.42 16 8 C 0.70 18.87 7.13 179.05 1.28 20.15 16 9 O -0.62 -20.53 13.48 -3.99 -0.05 -20.59 16 10 N -0.73 -18.79 5.56 -478.55 -2.66 -21.45 16 11 C 0.15 4.63 5.67 86.38 0.49 5.12 16 12 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 13 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 14 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 15 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 16 C 0.00 0.20 5.47 84.65 0.46 0.67 16 17 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 18 Si 0.95 44.27 27.47 68.60 1.88 46.15 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.72 6.54 99.48 0.65 -10.06 16 22 C -0.04 -0.73 6.12 24.83 0.15 -0.58 16 23 C -0.19 -3.11 10.80 22.19 0.24 -2.87 16 24 C -0.22 -3.21 10.81 22.19 0.24 -2.97 16 25 C -0.01 -0.21 7.32 24.83 0.18 -0.02 16 26 C -0.08 -0.53 10.42 71.24 0.74 0.21 16 27 O -0.18 -3.35 10.31 -2.51 -0.03 -3.38 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.29 7.84 -2.39 -0.02 1.27 16 32 H 0.04 1.13 5.65 -2.39 -0.01 1.12 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.41 6.93 8.33 -92.71 -0.77 6.15 16 36 H 0.41 8.36 8.49 -92.70 -0.79 7.57 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 42 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 Total: -1.00 -72.94 396.24 1.05 -71.90 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.65 Total: 23.02 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 6.17 Total: -6.91 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -4.68 Total: -98.05 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.67 Total: -36.11 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -72.94 1.05 -71.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272367763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.166 kcal (2) G-P(sol) polarization free energy of solvation -72.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds