Wall clock time and date at job start Tue Mar 31 2020 13:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00161 * 2 1 4 4 H 1.48495 * 109.47083 * 270.00229 * 3 2 1 5 5 H 1.48502 * 109.46835 * 30.00147 * 3 2 1 6 6 H 1.48497 * 109.46993 * 150.00403 * 3 2 1 7 7 C 1.37874 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99686 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00236 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.46907 * 110.99947 * 70.00459 * 10 9 7 12 12 C 1.50707 * 109.46636 * 293.95495 * 11 10 9 13 13 C 1.38223 * 119.61967 * 95.00279 * 12 11 10 14 14 C 1.38625 * 119.15978 * 180.27814 * 13 12 11 15 15 C 1.38677 * 118.42125 * 359.47454 * 14 13 12 16 16 C 1.38182 * 119.16070 * 0.51978 * 15 14 13 17 17 N 1.31855 * 119.61428 * 275.01848 * 12 11 10 18 18 C 1.46894 * 111.00291 * 193.95622 * 10 9 7 19 19 C 1.52997 * 109.47212 * 66.04778 * 18 10 9 20 20 H 1.09003 * 109.47175 * 304.99937 * 19 18 10 21 21 C 1.53008 * 109.47216 * 185.00190 * 19 18 10 22 22 C 1.52993 * 109.46901 * 179.97438 * 21 19 18 23 23 C 1.53007 * 109.47420 * 60.00035 * 22 21 19 24 24 C 1.52995 * 109.46870 * 299.99836 * 23 22 21 25 25 F 1.39901 * 109.46996 * 179.97438 * 24 23 22 26 26 F 1.39897 * 109.47491 * 299.99718 * 24 23 22 27 27 C 1.52995 * 109.47157 * 65.00173 * 19 18 10 28 28 H 0.97000 * 119.99673 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47246 * 60.00273 * 9 7 2 30 30 H 1.08992 * 109.47499 * 299.99886 * 9 7 2 31 31 H 1.09001 * 109.47060 * 173.95935 * 11 10 9 32 32 H 1.08994 * 109.47110 * 53.95194 * 11 10 9 33 33 H 1.08002 * 120.41617 * 359.97438 * 13 12 11 34 34 H 1.08003 * 120.79223 * 179.72202 * 14 13 12 35 35 H 1.08007 * 120.41717 * 180.27108 * 15 14 13 36 36 H 1.07997 * 119.61165 * 179.71854 * 16 15 14 37 37 H 1.08997 * 109.47427 * 186.05161 * 18 10 9 38 38 H 1.09005 * 109.46996 * 306.04462 * 18 10 9 39 39 H 1.09003 * 109.46842 * 299.99951 * 21 19 18 40 40 H 1.08997 * 109.46718 * 59.99809 * 21 19 18 41 41 H 1.09004 * 109.47159 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.47466 * 299.99733 * 22 21 19 43 43 H 1.08998 * 109.46599 * 59.99556 * 23 22 21 44 44 H 1.09001 * 109.47244 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.47435 * 299.99837 * 27 19 18 46 46 H 1.08996 * 109.47531 * 60.00156 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.7340 -3.2320 -1.2896 12 6 2.2461 -3.3777 -1.4798 13 6 1.5516 -2.4192 -2.1937 14 6 0.1823 -2.5597 -2.3579 15 6 -0.4384 -3.6697 -1.8049 16 6 0.3215 -4.5867 -1.1042 17 7 1.6219 -4.4178 -0.9631 18 6 5.4315 -2.6317 0.3292 19 6 5.6387 -2.1724 1.7738 20 1 5.1979 -1.1845 1.9077 21 6 7.1368 -2.1079 2.0786 22 6 7.3439 -1.6479 3.5230 23 6 6.6719 -2.6392 4.4753 24 6 5.1740 -2.7036 4.1705 25 9 4.5596 -3.6104 5.0409 26 9 4.6082 -1.4357 4.3418 27 6 4.9669 -3.1640 2.7256 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8889 30 1 3.8745 -0.6801 -0.8911 31 1 4.1999 -4.2173 -1.3011 32 1 4.1458 -2.6258 -2.0963 33 1 2.0684 -1.5692 -2.6139 34 1 -0.3870 -1.8243 -2.9070 35 1 -1.5030 -3.8135 -1.9171 36 1 -0.1551 -5.4514 -0.6666 37 1 5.7928 -3.6540 0.2176 38 1 5.9841 -1.9758 -0.3435 39 1 7.5776 -3.0958 1.9447 40 1 7.6154 -1.4014 1.4005 41 1 8.4111 -1.6024 3.7403 42 1 6.9031 -0.6600 3.6565 43 1 7.1127 -3.6270 4.3418 44 1 6.8198 -2.3117 5.5044 45 1 3.8997 -3.2100 2.5086 46 1 5.4077 -4.1519 2.5918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338311519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:03 Heat of formation + Delta-G solvation = -63.685548 kcal Electronic energy + Delta-G solvation = -29224.932995 eV Core-core repulsion = 25170.970705 eV Total energy + Delta-G solvation = -4053.962289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.171 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.64316 -46.63667 -39.48705 -38.32875 -36.15199 -32.69061 -32.04002 -31.26295 -30.23511 -29.83909 -28.17394 -26.15123 -23.86674 -22.59608 -22.46524 -22.09231 -20.97398 -20.03357 -19.44853 -17.07796 -16.94949 -16.46375 -16.06806 -15.88431 -15.39700 -15.01750 -14.78844 -14.70915 -14.43633 -13.81818 -13.69670 -13.47292 -13.16117 -12.97975 -12.91749 -12.82667 -12.48950 -12.39745 -12.27578 -12.05513 -11.98187 -11.87822 -11.76866 -11.32863 -11.10481 -11.04628 -10.80405 -10.66622 -10.53322 -10.44501 -10.02220 -9.93411 -9.79188 -9.33967 -8.83281 -8.53674 -8.45932 -7.65109 -7.44670 -6.05919 -3.96774 2.13928 2.41679 3.22885 3.32770 3.35069 3.97457 4.32945 4.38302 4.39867 4.48697 4.59947 4.96144 5.00330 5.12890 5.18420 5.25872 5.27736 5.32483 5.35889 5.53865 5.64467 5.66802 5.74780 5.77329 5.85275 5.92013 5.95024 6.00079 6.03421 6.06106 6.09907 6.12845 6.22685 6.33684 6.54754 6.58324 6.60573 6.69639 6.78654 6.85461 7.13937 7.26740 7.58017 7.71953 7.84798 7.96136 8.61964 9.01219 9.06612 9.53320 11.03578 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.004906 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.808205 B = 5706.165066 C = 6500.510207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.073 3.927 3 Si 0.862 3.138 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.500 4.500 8 H 0.098 0.902 9 C 0.153 3.847 10 N -0.519 5.519 11 C 0.120 3.880 12 C 0.151 3.849 13 C -0.082 4.082 14 C -0.076 4.076 15 C -0.169 4.169 16 C 0.067 3.933 17 N -0.480 5.480 18 C 0.063 3.937 19 C -0.084 4.084 20 H 0.086 0.914 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.156 4.156 24 C 0.285 3.715 25 F -0.207 7.207 26 F -0.198 7.198 27 C -0.141 4.141 28 H 0.261 0.739 29 H 0.033 0.967 30 H -0.017 1.017 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 -5.599 0.703 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.130 4.130 3 Si 0.690 3.310 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.538 4.538 8 H 0.116 0.884 9 C 0.027 3.973 10 N -0.243 5.243 11 C -0.008 4.008 12 C 0.011 3.989 13 C -0.103 4.103 14 C -0.102 4.102 15 C -0.189 4.189 16 C -0.088 4.088 17 N -0.190 5.190 18 C -0.065 4.065 19 C -0.103 4.103 20 H 0.105 0.895 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.194 4.194 24 C 0.249 3.751 25 F -0.188 7.188 26 F -0.179 7.179 27 C -0.179 4.179 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.001 0.999 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.126 0.874 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.216 -6.346 1.566 13.854 hybrid contribution -0.062 2.421 -0.662 2.511 sum 12.153 -3.924 0.904 12.803 Atomic orbital electron populations 1.69893 1.05858 1.26486 1.49937 1.24833 0.94635 0.98170 0.95355 0.87052 0.80750 0.84910 0.78274 1.20584 1.21292 1.19210 1.21451 0.88772 0.95275 1.48299 0.88443 1.20374 0.97445 0.84166 0.95286 1.61927 1.13026 1.19899 1.29458 1.20689 0.91128 0.98458 0.90573 1.20474 0.95473 0.90362 0.92551 1.21478 0.94804 0.96732 0.97280 1.21073 0.94395 0.95991 0.98701 1.21781 0.99983 0.96475 1.00691 1.22219 0.89924 0.98834 0.97847 1.67263 1.10489 1.23000 1.18266 1.22025 0.89987 1.00070 0.94420 1.21172 0.94204 1.00322 0.94588 0.89537 1.21655 0.96320 1.01724 0.95914 1.21487 1.00502 0.99045 0.94448 1.22503 0.92587 1.02708 1.01598 1.21233 0.89811 0.73418 0.90628 1.92980 1.85394 1.67936 1.72535 1.93006 1.87017 1.41526 1.96357 1.22436 1.06016 0.99924 0.89514 0.92848 0.94871 0.99945 0.90838 0.94615 0.86500 0.86609 0.86721 0.84619 0.91382 0.95395 0.91578 0.91377 0.90907 0.90959 0.89091 0.90130 0.87372 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.96 55.43 0.77 -24.46 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.86 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.50 -13.06 6.33 -34.44 -0.22 -13.28 16 8 H 0.10 2.79 5.15 -52.48 -0.27 2.52 16 9 C 0.15 3.46 3.62 -4.98 -0.02 3.44 16 10 N -0.52 -10.05 4.02 -237.52 -0.95 -11.01 16 11 C 0.12 2.20 5.28 -4.97 -0.03 2.17 16 12 C 0.15 3.14 4.01 -82.58 -0.33 2.80 16 13 C -0.08 -1.72 6.31 -39.44 -0.25 -1.97 16 14 C -0.08 -1.54 10.09 -39.28 -0.40 -1.94 16 15 C -0.17 -3.24 10.11 -39.44 -0.40 -3.64 16 16 C 0.07 1.31 11.18 -17.55 -0.20 1.11 16 17 N -0.48 -10.14 10.16 -9.47 -0.10 -10.23 16 18 C 0.06 0.97 4.35 -3.83 -0.02 0.95 16 19 C -0.08 -1.23 2.01 -90.62 -0.18 -1.41 16 20 H 0.09 1.52 5.78 -51.93 -0.30 1.22 16 21 C -0.12 -1.29 5.20 -26.73 -0.14 -1.43 16 22 C -0.12 -1.21 5.80 -26.73 -0.16 -1.37 16 23 C -0.16 -1.72 5.45 -26.73 -0.15 -1.87 16 24 C 0.29 4.29 2.10 -26.70 -0.06 4.23 16 25 F -0.21 -3.39 17.06 2.25 0.04 -3.36 16 26 F -0.20 -3.56 16.02 2.25 0.04 -3.52 16 27 C -0.14 -2.15 4.63 -26.71 -0.12 -2.28 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.03 0.78 4.96 -51.93 -0.26 0.52 16 30 H -0.02 -0.38 7.41 -51.93 -0.39 -0.77 16 31 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 32 H 0.04 0.61 7.91 -51.93 -0.41 0.20 16 33 H 0.12 2.42 7.99 -52.49 -0.42 2.00 16 34 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 35 H 0.11 1.89 8.06 -52.48 -0.42 1.46 16 36 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 38 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.84 7.80 -51.93 -0.41 0.44 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.11 2.06 7.75 -51.93 -0.40 1.66 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -29.98 361.46 -9.24 -39.22 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.07 Total: 4.47 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.75 Total: -12.60 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.28 Total: -45.70 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.07 Total: -6.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.98 -9.24 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338311519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.463 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds