Wall clock time and date at job start Tue Mar 31 2020 13:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00161 * 2 1 4 4 H 1.48495 * 109.47083 * 270.00229 * 3 2 1 5 5 H 1.48502 * 109.46835 * 30.00147 * 3 2 1 6 6 H 1.48497 * 109.46993 * 150.00403 * 3 2 1 7 7 C 1.37874 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99686 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00236 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.46907 * 110.99947 * 70.00459 * 10 9 7 12 12 C 1.50707 * 109.46636 * 293.95495 * 11 10 9 13 13 C 1.38223 * 119.61967 * 95.00279 * 12 11 10 14 14 C 1.38625 * 119.15978 * 180.27814 * 13 12 11 15 15 C 1.38677 * 118.42125 * 359.47454 * 14 13 12 16 16 C 1.38182 * 119.16070 * 0.51978 * 15 14 13 17 17 N 1.31855 * 119.61428 * 275.01848 * 12 11 10 18 18 C 1.46894 * 111.00291 * 193.95622 * 10 9 7 19 19 C 1.52997 * 109.47212 * 66.04778 * 18 10 9 20 20 H 1.09003 * 109.47175 * 304.99937 * 19 18 10 21 21 C 1.53008 * 109.47216 * 185.00190 * 19 18 10 22 22 C 1.52993 * 109.46901 * 179.97438 * 21 19 18 23 23 C 1.53007 * 109.47420 * 60.00035 * 22 21 19 24 24 C 1.52995 * 109.46870 * 299.99836 * 23 22 21 25 25 F 1.39901 * 109.46996 * 179.97438 * 24 23 22 26 26 F 1.39897 * 109.47491 * 299.99718 * 24 23 22 27 27 C 1.52995 * 109.47157 * 65.00173 * 19 18 10 28 28 H 0.97000 * 119.99673 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47246 * 60.00273 * 9 7 2 30 30 H 1.08992 * 109.47499 * 299.99886 * 9 7 2 31 31 H 1.09001 * 109.47060 * 173.95935 * 11 10 9 32 32 H 1.08994 * 109.47110 * 53.95194 * 11 10 9 33 33 H 1.08002 * 120.41617 * 359.97438 * 13 12 11 34 34 H 1.08003 * 120.79223 * 179.72202 * 14 13 12 35 35 H 1.08007 * 120.41717 * 180.27108 * 15 14 13 36 36 H 1.07997 * 119.61165 * 179.71854 * 16 15 14 37 37 H 1.08997 * 109.47427 * 186.05161 * 18 10 9 38 38 H 1.09005 * 109.46996 * 306.04462 * 18 10 9 39 39 H 1.09003 * 109.46842 * 299.99951 * 21 19 18 40 40 H 1.08997 * 109.46718 * 59.99809 * 21 19 18 41 41 H 1.09004 * 109.47159 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.47466 * 299.99733 * 22 21 19 43 43 H 1.08998 * 109.46599 * 59.99556 * 23 22 21 44 44 H 1.09001 * 109.47244 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.47435 * 299.99837 * 27 19 18 46 46 H 1.08996 * 109.47531 * 60.00156 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 3.7340 -3.2320 -1.2896 12 6 2.2461 -3.3777 -1.4798 13 6 1.5516 -2.4192 -2.1937 14 6 0.1823 -2.5597 -2.3579 15 6 -0.4384 -3.6697 -1.8049 16 6 0.3215 -4.5867 -1.1042 17 7 1.6219 -4.4178 -0.9631 18 6 5.4315 -2.6317 0.3292 19 6 5.6387 -2.1724 1.7738 20 1 5.1979 -1.1845 1.9077 21 6 7.1368 -2.1079 2.0786 22 6 7.3439 -1.6479 3.5230 23 6 6.6719 -2.6392 4.4753 24 6 5.1740 -2.7036 4.1705 25 9 4.5596 -3.6104 5.0409 26 9 4.6082 -1.4357 4.3418 27 6 4.9669 -3.1640 2.7256 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8889 30 1 3.8745 -0.6801 -0.8911 31 1 4.1999 -4.2173 -1.3011 32 1 4.1458 -2.6258 -2.0963 33 1 2.0684 -1.5692 -2.6139 34 1 -0.3870 -1.8243 -2.9070 35 1 -1.5030 -3.8135 -1.9171 36 1 -0.1551 -5.4514 -0.6666 37 1 5.7928 -3.6540 0.2176 38 1 5.9841 -1.9758 -0.3435 39 1 7.5776 -3.0958 1.9447 40 1 7.6154 -1.4014 1.4005 41 1 8.4111 -1.6024 3.7403 42 1 6.9031 -0.6600 3.6565 43 1 7.1127 -3.6270 4.3418 44 1 6.8198 -2.3117 5.5044 45 1 3.8997 -3.2100 2.5086 46 1 5.4077 -4.1519 2.5918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338311519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:03 Heat of formation + Delta-G solvation = -80.912680 kcal Electronic energy + Delta-G solvation = -29225.680019 eV Core-core repulsion = 25170.970705 eV Total energy + Delta-G solvation = -4054.709314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.171 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.90254 -47.92505 -41.03881 -39.52515 -37.48771 -34.60900 -33.35043 -32.85457 -31.63710 -30.90248 -29.96595 -27.45798 -25.35575 -24.05821 -23.82026 -23.52101 -22.29147 -21.39001 -20.67915 -19.00119 -18.18300 -17.67337 -17.41062 -17.26786 -16.96592 -16.49312 -16.28377 -16.19286 -15.83502 -15.07713 -15.05086 -14.91565 -14.66396 -14.42720 -14.26262 -14.21366 -13.92645 -13.83696 -13.55137 -13.51329 -13.42999 -13.11412 -13.01225 -12.89051 -12.60882 -12.30650 -12.19098 -12.03749 -11.84848 -11.73103 -11.53046 -11.42469 -11.19354 -10.94780 -10.72719 -10.28261 -10.05852 -9.30626 -8.93973 -8.13023 -6.05979 0.57390 0.80785 1.29796 1.36111 1.41678 2.38318 2.90066 2.98234 3.20242 3.24543 3.44115 3.48451 3.56176 3.71255 4.00678 4.06854 4.14588 4.25214 4.28093 4.31261 4.33945 4.47232 4.54063 4.57159 4.61258 4.68279 4.71259 4.80444 4.81598 4.95781 4.96833 5.01447 5.06144 5.06246 5.11132 5.18149 5.19417 5.22754 5.40815 5.51309 5.55434 5.66731 5.69823 6.09670 6.18020 6.42777 6.74502 6.95500 7.43547 7.47166 8.98411 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.004906 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.808205 B = 5706.165066 C = 6500.510207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.025 3.975 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.069 0.931 9 C 0.165 3.835 10 N -0.535 5.535 11 C 0.120 3.880 12 C 0.142 3.858 13 C -0.099 4.099 14 C -0.086 4.086 15 C -0.176 4.176 16 C 0.061 3.939 17 N -0.498 5.498 18 C 0.063 3.937 19 C -0.081 4.081 20 H 0.049 0.951 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.146 4.146 24 C 0.270 3.730 25 F -0.219 7.219 26 F -0.222 7.222 27 C -0.135 4.135 28 H 0.258 0.742 29 H 0.023 0.977 30 H -0.015 1.015 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.118 0.882 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.258 -6.628 0.661 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.174 4.174 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.087 0.913 9 C 0.038 3.962 10 N -0.259 5.259 11 C -0.008 4.008 12 C 0.002 3.998 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.196 4.196 16 C -0.094 4.094 17 N -0.208 5.208 18 C -0.065 4.065 19 C -0.100 4.100 20 H 0.067 0.933 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.184 4.184 24 C 0.234 3.766 25 F -0.200 7.200 26 F -0.204 7.204 27 C -0.173 4.173 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.002 0.998 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.113 0.887 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.309 -7.384 1.516 17.064 hybrid contribution -1.100 2.605 -0.648 2.901 sum 14.208 -4.779 0.868 15.016 Atomic orbital electron populations 1.70021 1.07199 1.26790 1.52457 1.25428 0.95193 1.01025 0.95722 0.86225 0.79734 0.81408 0.78656 1.19436 1.22120 1.18454 1.21588 0.90648 0.94007 1.46766 0.91262 1.20083 0.95131 0.86314 0.94626 1.61801 1.16111 1.17737 1.30227 1.20780 0.89865 0.99649 0.90533 1.20861 0.96806 0.90080 0.92053 1.21542 0.95237 0.97004 0.98173 1.21314 0.94572 0.96570 0.98784 1.22096 1.01414 0.95893 1.00176 1.22780 0.89750 0.99659 0.97246 1.67326 1.11360 1.23467 1.18693 1.22176 0.87389 1.02049 0.94839 1.21143 0.96910 0.97867 0.94089 0.93284 1.21636 0.93039 1.03701 0.96437 1.21521 1.02214 0.97642 0.93898 1.22533 0.88921 1.04573 1.02372 1.21814 0.92270 0.72135 0.90352 1.92951 1.85985 1.68236 1.72865 1.92956 1.87743 1.43205 1.96449 1.22360 1.03274 1.01610 0.90096 0.93271 0.95950 0.99762 0.88729 0.93347 0.87077 0.86259 0.84089 0.81795 0.88654 0.94109 0.88804 0.90315 0.87513 0.93011 0.86364 0.89244 0.92171 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.43 13.96 21.45 0.30 -54.13 16 2 C 0.02 1.37 5.47 84.65 0.46 1.83 16 3 Si 0.91 43.39 27.47 68.60 1.88 45.27 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.26 -11.93 6.54 99.48 0.65 -11.27 16 7 C -0.49 -26.27 6.33 25.60 0.16 -26.10 16 8 H 0.07 4.08 5.15 -2.90 -0.01 4.06 16 9 C 0.17 7.48 3.62 85.56 0.31 7.79 16 10 N -0.53 -20.30 4.02 -905.38 -3.64 -23.93 16 11 C 0.12 4.25 5.28 85.56 0.45 4.70 16 12 C 0.14 5.86 4.01 42.55 0.17 6.03 16 13 C -0.10 -4.22 6.31 22.36 0.14 -4.08 16 14 C -0.09 -3.58 10.09 22.47 0.23 -3.35 16 15 C -0.18 -6.70 10.11 22.36 0.23 -6.47 16 16 C 0.06 2.34 11.18 84.67 0.95 3.29 16 17 N -0.50 -20.91 10.16 -183.88 -1.87 -22.78 16 18 C 0.06 1.76 4.35 86.30 0.38 2.14 16 19 C -0.08 -2.24 2.01 -10.79 -0.02 -2.26 16 20 H 0.05 1.73 5.78 -2.39 -0.01 1.72 16 21 C -0.11 -1.98 5.20 30.59 0.16 -1.82 16 22 C -0.12 -1.99 5.80 30.59 0.18 -1.81 16 23 C -0.15 -2.79 5.45 30.60 0.17 -2.62 16 24 C 0.27 7.93 2.10 30.61 0.06 7.99 16 25 F -0.22 -7.12 17.06 44.97 0.77 -6.35 16 26 F -0.22 -8.19 16.02 44.97 0.72 -7.47 16 27 C -0.14 -4.02 4.63 30.61 0.14 -3.88 16 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.02 1.07 4.96 -2.38 -0.01 1.06 16 30 H -0.02 -0.67 7.41 -2.39 -0.02 -0.69 16 31 H 0.09 2.92 7.93 -2.39 -0.02 2.90 16 32 H 0.05 1.58 7.91 -2.39 -0.02 1.56 16 33 H 0.11 4.73 7.99 -2.91 -0.02 4.71 16 34 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.16 5.18 8.06 -2.91 -0.02 5.16 16 37 H 0.10 2.18 7.93 -2.39 -0.02 2.16 16 38 H 0.04 1.06 8.12 -2.38 -0.02 1.04 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.05 1.12 7.80 -2.39 -0.02 1.10 16 43 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.06 2.36 7.75 -2.39 -0.02 2.34 16 46 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -68.01 361.46 3.24 -64.77 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.91 Total: 23.25 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 4.16 Total: -18.63 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.20 Total: -100.84 kcal Atomic # 9 Polarization: -15.31 SS G_CDS: 1.49 Total: -13.82 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -68.01 3.24 -64.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338311519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.145 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds