Wall clock time and date at job start Tue Mar 31 2020 15:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47119 * 2 1 4 4 N 1.30125 * 121.06014 * 89.97839 * 3 2 1 5 5 S 1.69951 * 105.76618 * 179.97438 * 4 3 2 6 6 C 1.72308 * 94.57072 * 359.97438 * 5 4 3 7 7 N 1.38315 * 127.50040 * 179.97438 * 6 5 4 8 8 C 1.48073 * 110.99966 * 236.06722 * 7 6 5 9 9 C 1.50748 * 112.93307 * 84.35233 * 8 7 6 10 10 C 1.54520 * 108.94341 * 92.65004 * 9 8 7 11 11 N 1.40083 * 111.51060 * 283.99364 * 10 9 8 12 12 C 1.46905 * 110.99815 * 188.14569 * 11 10 9 13 13 H 1.08997 * 109.46678 * 48.03275 * 12 11 10 14 14 C 1.52992 * 109.47071 * 288.03282 * 12 11 10 15 15 C 1.53000 * 109.46869 * 168.03157 * 12 11 10 16 16 C 1.50704 * 109.47072 * 297.11546 * 15 12 11 17 17 H 1.07995 * 120.00310 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99872 * 179.72850 * 16 15 12 19 19 N 1.31515 * 119.99970 * 0.27028 * 18 16 15 20 20 Si 1.86796 * 119.99803 * 180.27516 * 18 16 15 21 21 H 1.48494 * 109.47467 * 59.99811 * 20 18 16 22 22 H 1.48505 * 109.46770 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47226 * 299.99281 * 20 18 16 24 24 C 1.47686 * 114.57222 * 61.44829 * 11 10 9 25 25 C 1.47746 * 111.00287 * 3.67054 * 7 6 5 26 26 N 1.31286 * 121.06259 * 270.26887 * 3 2 1 27 27 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47047 * 300.00363 * 1 2 3 29 29 H 1.08997 * 109.47242 * 59.99800 * 1 2 3 30 30 H 1.09006 * 109.46750 * 239.99738 * 2 1 3 31 31 H 1.08998 * 109.46718 * 120.00210 * 2 1 3 32 32 H 1.09001 * 108.79252 * 323.46590 * 8 7 6 33 33 H 1.08999 * 108.70292 * 205.18003 * 8 7 6 34 34 H 1.09001 * 109.55931 * 332.81414 * 9 8 7 35 35 H 1.08997 * 109.64620 * 212.54118 * 9 8 7 36 36 H 1.08997 * 109.07469 * 163.46495 * 10 9 8 37 37 H 1.09003 * 109.01306 * 44.47182 * 10 9 8 38 38 H 1.09004 * 109.47180 * 299.99901 * 14 12 11 39 39 H 1.08993 * 109.47608 * 59.99774 * 14 12 11 40 40 H 1.08999 * 109.46981 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47146 * 177.11682 * 15 12 11 42 42 H 1.09004 * 109.47224 * 57.11275 * 15 12 11 43 43 H 0.96998 * 120.00066 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.74071 * 38.33693 * 24 11 10 45 45 H 1.09003 * 109.73767 * 159.03748 * 24 11 10 46 46 H 1.08994 * 108.99373 * 313.43899 * 25 7 6 47 47 H 1.08996 * 108.98940 * 72.26532 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2557 2.0539 1.1147 5 16 2.8030 3.5991 0.6664 6 6 2.6977 3.2963 -1.0266 7 7 3.0057 4.1648 -2.0581 8 6 1.8511 4.3374 -2.9690 9 6 0.8766 5.3833 -2.4905 10 6 1.2488 6.7428 -3.1237 11 7 2.3674 7.3106 -2.5003 12 6 2.5956 8.6817 -2.9757 13 1 1.6579 9.2367 -2.9477 14 6 3.1224 8.6426 -4.4116 15 6 3.6226 9.3698 -2.0742 16 6 3.0738 9.4717 -0.6743 17 1 2.0911 9.0841 -0.4500 18 6 3.8289 10.0543 0.3214 19 7 5.0258 10.5259 0.0484 20 14 3.1518 10.1737 2.0583 21 1 2.8686 8.8103 2.5740 22 1 4.1510 10.8363 2.9346 23 1 1.8978 10.9692 2.0471 24 6 3.6008 6.5042 -2.5988 25 6 3.5480 5.4361 -1.5359 26 7 2.2532 2.0612 -1.1246 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3284 3.3850 -3.0577 33 1 2.2219 4.6267 -3.9523 34 1 0.9280 5.4603 -1.4045 35 1 -0.1344 5.1062 -2.7893 36 1 0.4033 7.4239 -3.0275 37 1 1.4676 6.5940 -4.1811 38 1 4.0601 8.0876 -4.4395 39 1 2.3908 8.1524 -5.0538 40 1 3.2921 9.6599 -4.7641 41 1 3.8301 10.3692 -2.4567 42 1 4.5436 8.7869 -2.0618 43 1 5.5572 10.9354 0.7490 44 1 3.6600 6.0408 -3.5837 45 1 4.4707 7.1409 -2.4379 46 1 2.9168 5.7813 -0.7171 47 1 4.5556 5.2632 -1.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351233048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:10 Heat of formation + Delta-G solvation = 67.578341 kcal Electronic energy + Delta-G solvation = -26444.940520 eV Core-core repulsion = 22982.803398 eV Total energy + Delta-G solvation = -3462.137122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61490 -39.67710 -37.07019 -33.83327 -33.12476 -32.32805 -31.51332 -30.66921 -28.11281 -27.28464 -25.80904 -25.42687 -23.29139 -22.90350 -21.35825 -20.54193 -19.41154 -19.03755 -18.69967 -17.01394 -16.38283 -16.20966 -15.41171 -15.32389 -14.96925 -14.71758 -14.38169 -14.21809 -14.08460 -13.43599 -13.12608 -13.01926 -12.69060 -12.51378 -12.20041 -12.10329 -11.84924 -11.78315 -11.71510 -11.60239 -11.31253 -11.24216 -11.21230 -11.10516 -10.92666 -10.73589 -10.60602 -10.44497 -10.32459 -9.96161 -9.68943 -9.32742 -9.25682 -9.05429 -8.38957 -8.30457 -7.58240 -5.94369 -3.92681 0.51092 1.13534 1.76969 2.54619 3.01132 3.37636 3.42392 3.45603 4.16203 4.31967 4.52166 4.72950 4.83697 4.85672 4.98955 5.04085 5.13860 5.24257 5.34539 5.42395 5.50293 5.51837 5.55103 5.60792 5.63022 5.69097 5.73519 5.82182 5.82926 5.85977 5.91487 5.98808 6.03433 6.09222 6.19837 6.27863 6.41205 6.48092 6.60748 6.63842 6.87752 7.42046 7.64332 7.66548 7.82993 8.02317 8.05931 8.50998 9.13150 9.69841 11.17299 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.004109 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.522070 B = 6812.997202 C = 8192.483714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C 0.285 3.715 4 N -0.497 5.497 5 S 0.198 5.802 6 C 0.282 3.718 7 N -0.438 5.438 8 C 0.066 3.934 9 C -0.151 4.151 10 C 0.076 3.924 11 N -0.534 5.534 12 C 0.093 3.907 13 H 0.071 0.929 14 C -0.182 4.182 15 C 0.029 3.971 16 C -0.493 4.493 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.885 3.115 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.068 3.932 25 C 0.049 3.951 26 N -0.546 5.546 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.018 0.982 38 H 0.052 0.948 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.259 0.741 44 H 0.043 0.957 45 H 0.108 0.892 46 H 0.083 0.917 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 -16.141 -6.282 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.006 4.006 4 N -0.329 5.329 5 S 0.336 5.664 6 C -0.096 4.096 7 N -0.158 5.158 8 C -0.061 4.061 9 C -0.190 4.190 10 C -0.054 4.054 11 N -0.258 5.258 12 C -0.014 4.014 13 H 0.089 0.911 14 C -0.241 4.241 15 C -0.008 4.008 16 C -0.531 4.531 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.543 5.543 20 Si 0.714 3.286 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.060 4.060 25 C -0.077 4.077 26 N -0.275 5.275 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.126 0.874 46 H 0.101 0.899 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.391 -15.939 -4.816 17.836 hybrid contribution -0.619 -0.057 -0.233 0.663 sum -7.010 -15.996 -5.049 18.180 Atomic orbital electron populations 1.21703 0.93575 1.02388 1.02592 1.20156 0.96635 0.86683 1.04188 1.23300 0.95643 0.99154 0.82482 1.77439 1.26502 1.02770 1.26182 1.85499 1.61818 1.17416 1.01668 1.27046 0.93331 0.93267 0.95945 1.58319 1.30459 1.13553 1.13517 1.22194 0.88054 1.00526 0.95309 1.22120 0.99033 0.95400 1.02473 1.21019 0.94696 0.95019 0.94691 1.58993 1.03354 1.03141 1.60274 1.21880 1.00871 0.87183 0.91448 0.91120 1.22515 1.00627 1.01835 0.99171 1.19246 0.92909 0.94767 0.93888 1.21091 1.02190 1.36474 0.93380 0.92227 1.24977 0.94990 0.96004 0.98631 1.69938 1.10445 1.40762 1.33123 0.86764 0.78544 0.78277 0.85042 1.20238 1.21602 1.20512 1.21798 0.94851 0.93625 0.95677 1.22514 1.01126 0.84745 0.99328 1.67348 1.24666 1.05752 1.29754 0.91412 0.92339 0.92160 0.88994 0.89291 0.89513 0.89256 0.90676 0.90245 0.91016 0.96451 0.92935 0.94129 0.92384 0.96219 0.96212 0.93187 0.93864 0.87413 0.89865 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.89 37.16 0.37 -0.87 16 2 C -0.03 -0.34 6.47 -27.88 -0.18 -0.52 16 3 C 0.28 3.96 6.82 -159.04 -1.08 2.87 16 4 N -0.50 -7.71 12.15 29.54 0.36 -7.35 16 5 S 0.20 3.06 21.94 -107.50 -2.36 0.70 16 6 C 0.28 4.18 6.80 -86.35 -0.59 3.59 16 7 N -0.44 -6.08 4.80 -175.52 -0.84 -6.92 16 8 C 0.07 0.79 5.12 -4.31 -0.02 0.77 16 9 C -0.15 -1.86 5.63 -27.06 -0.15 -2.01 16 10 C 0.08 1.03 4.69 -6.55 -0.03 1.00 16 11 N -0.53 -8.77 3.57 -231.68 -0.83 -9.59 16 12 C 0.09 1.68 2.23 -67.71 -0.15 1.53 16 13 H 0.07 1.32 7.81 -51.93 -0.41 0.91 16 14 C -0.18 -2.78 8.68 37.15 0.32 -2.45 16 15 C 0.03 0.67 4.34 -27.88 -0.12 0.55 16 16 C -0.49 -12.90 8.79 -34.44 -0.30 -13.20 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 19 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 C 0.07 1.04 3.80 -4.50 -0.02 1.02 16 25 C 0.05 0.73 4.42 -4.47 -0.02 0.71 16 26 N -0.55 -8.01 10.12 -14.58 -0.15 -8.16 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.03 7.47 -51.93 -0.39 0.65 16 33 H 0.09 1.01 6.51 -51.93 -0.34 0.67 16 34 H 0.07 1.09 7.03 -51.93 -0.36 0.72 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.98 7.81 -51.93 -0.41 0.58 16 37 H 0.02 0.22 6.32 -51.93 -0.33 -0.10 16 38 H 0.05 0.79 6.91 -51.93 -0.36 0.43 16 39 H 0.04 0.54 6.89 -51.93 -0.36 0.19 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.48 6.02 -51.93 -0.31 0.17 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.04 0.60 6.59 -51.93 -0.34 0.26 16 45 H 0.11 1.87 5.50 -51.93 -0.29 1.59 16 46 H 0.08 1.40 6.12 -51.93 -0.32 1.08 16 47 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -29.29 370.17 -12.15 -41.44 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.55 Total: -1.14 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.08 Total: -5.61 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.72 Total: -57.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.36 Total: 0.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.29 -12.15 -41.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351233048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.021 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds