Wall clock time and date at job start Tue Mar 31 2020 15:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47119 * 2 1 4 4 N 1.30125 * 121.06014 * 89.97839 * 3 2 1 5 5 S 1.69951 * 105.76618 * 179.97438 * 4 3 2 6 6 C 1.72308 * 94.57072 * 359.97438 * 5 4 3 7 7 N 1.38315 * 127.50040 * 179.97438 * 6 5 4 8 8 C 1.48073 * 110.99966 * 236.06722 * 7 6 5 9 9 C 1.50748 * 112.93307 * 84.35233 * 8 7 6 10 10 C 1.54520 * 108.94341 * 92.65004 * 9 8 7 11 11 N 1.40083 * 111.51060 * 283.99364 * 10 9 8 12 12 C 1.46905 * 110.99815 * 188.14569 * 11 10 9 13 13 H 1.08997 * 109.46678 * 48.03275 * 12 11 10 14 14 C 1.52992 * 109.47071 * 288.03282 * 12 11 10 15 15 C 1.53000 * 109.46869 * 168.03157 * 12 11 10 16 16 C 1.50704 * 109.47072 * 297.11546 * 15 12 11 17 17 H 1.07995 * 120.00310 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99872 * 179.72850 * 16 15 12 19 19 N 1.31515 * 119.99970 * 0.27028 * 18 16 15 20 20 Si 1.86796 * 119.99803 * 180.27516 * 18 16 15 21 21 H 1.48494 * 109.47467 * 59.99811 * 20 18 16 22 22 H 1.48505 * 109.46770 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47226 * 299.99281 * 20 18 16 24 24 C 1.47686 * 114.57222 * 61.44829 * 11 10 9 25 25 C 1.47746 * 111.00287 * 3.67054 * 7 6 5 26 26 N 1.31286 * 121.06259 * 270.26887 * 3 2 1 27 27 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47047 * 300.00363 * 1 2 3 29 29 H 1.08997 * 109.47242 * 59.99800 * 1 2 3 30 30 H 1.09006 * 109.46750 * 239.99738 * 2 1 3 31 31 H 1.08998 * 109.46718 * 120.00210 * 2 1 3 32 32 H 1.09001 * 108.79252 * 323.46590 * 8 7 6 33 33 H 1.08999 * 108.70292 * 205.18003 * 8 7 6 34 34 H 1.09001 * 109.55931 * 332.81414 * 9 8 7 35 35 H 1.08997 * 109.64620 * 212.54118 * 9 8 7 36 36 H 1.08997 * 109.07469 * 163.46495 * 10 9 8 37 37 H 1.09003 * 109.01306 * 44.47182 * 10 9 8 38 38 H 1.09004 * 109.47180 * 299.99901 * 14 12 11 39 39 H 1.08993 * 109.47608 * 59.99774 * 14 12 11 40 40 H 1.08999 * 109.46981 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47146 * 177.11682 * 15 12 11 42 42 H 1.09004 * 109.47224 * 57.11275 * 15 12 11 43 43 H 0.96998 * 120.00066 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.74071 * 38.33693 * 24 11 10 45 45 H 1.09003 * 109.73767 * 159.03748 * 24 11 10 46 46 H 1.08994 * 108.99373 * 313.43899 * 25 7 6 47 47 H 1.08996 * 108.98940 * 72.26532 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2557 2.0539 1.1147 5 16 2.8030 3.5991 0.6664 6 6 2.6977 3.2963 -1.0266 7 7 3.0057 4.1648 -2.0581 8 6 1.8511 4.3374 -2.9690 9 6 0.8766 5.3833 -2.4905 10 6 1.2488 6.7428 -3.1237 11 7 2.3674 7.3106 -2.5003 12 6 2.5956 8.6817 -2.9757 13 1 1.6579 9.2367 -2.9477 14 6 3.1224 8.6426 -4.4116 15 6 3.6226 9.3698 -2.0742 16 6 3.0738 9.4717 -0.6743 17 1 2.0911 9.0841 -0.4500 18 6 3.8289 10.0543 0.3214 19 7 5.0258 10.5259 0.0484 20 14 3.1518 10.1737 2.0583 21 1 2.8686 8.8103 2.5740 22 1 4.1510 10.8363 2.9346 23 1 1.8978 10.9692 2.0471 24 6 3.6008 6.5042 -2.5988 25 6 3.5480 5.4361 -1.5359 26 7 2.2532 2.0612 -1.1246 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3284 3.3850 -3.0577 33 1 2.2219 4.6267 -3.9523 34 1 0.9280 5.4603 -1.4045 35 1 -0.1344 5.1062 -2.7893 36 1 0.4033 7.4239 -3.0275 37 1 1.4676 6.5940 -4.1811 38 1 4.0601 8.0876 -4.4395 39 1 2.3908 8.1524 -5.0538 40 1 3.2921 9.6599 -4.7641 41 1 3.8301 10.3692 -2.4567 42 1 4.5436 8.7869 -2.0618 43 1 5.5572 10.9354 0.7490 44 1 3.6600 6.0408 -3.5837 45 1 4.4707 7.1409 -2.4379 46 1 2.9168 5.7813 -0.7171 47 1 4.5556 5.2632 -1.1580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351233048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:09 Heat of formation + Delta-G solvation = 50.230243 kcal Electronic energy + Delta-G solvation = -26445.692790 eV Core-core repulsion = 22982.803398 eV Total energy + Delta-G solvation = -3462.889392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74685 -40.84830 -38.32789 -35.27164 -34.33747 -33.73410 -32.66395 -31.99025 -29.54651 -28.79597 -26.95063 -26.37098 -25.09738 -23.90365 -22.73241 -21.59902 -20.61914 -20.23303 -19.90686 -18.28422 -18.15287 -17.50894 -16.72501 -16.53996 -16.43099 -15.99550 -15.66734 -15.24421 -14.96735 -14.74643 -14.42045 -14.27427 -13.84847 -13.61891 -13.53919 -13.43313 -13.15292 -13.14216 -12.98107 -12.74637 -12.69760 -12.49753 -12.44163 -12.32473 -12.20261 -12.15032 -11.99904 -11.88475 -11.62318 -11.37222 -11.06148 -10.94939 -10.85469 -10.47194 -10.42062 -9.54765 -8.83554 -8.06698 -6.09475 -0.62766 -0.02510 0.64109 1.42866 1.44562 1.45951 1.50925 1.88133 2.48819 3.06373 3.14564 3.29793 3.70394 3.79717 3.93374 4.03978 4.08413 4.21673 4.25119 4.31068 4.34033 4.37454 4.44410 4.54352 4.55073 4.64470 4.69337 4.76369 4.84069 4.89500 4.92895 4.97219 4.99757 5.05964 5.11752 5.18357 5.25803 5.29605 5.33722 5.38125 5.52043 5.57423 5.77648 5.95750 6.34008 6.50999 6.53495 6.77861 7.04895 7.56261 9.04737 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.004109 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.522070 B = 6812.997202 C = 8192.483714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C 0.284 3.716 4 N -0.515 5.515 5 S 0.160 5.840 6 C 0.288 3.712 7 N -0.433 5.433 8 C 0.066 3.934 9 C -0.141 4.141 10 C 0.075 3.925 11 N -0.551 5.551 12 C 0.103 3.897 13 H 0.065 0.935 14 C -0.172 4.172 15 C 0.034 3.966 16 C -0.492 4.492 17 H 0.057 0.943 18 C 0.003 3.997 19 N -0.937 5.937 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.290 1.290 23 H -0.272 1.272 24 C 0.076 3.924 25 C 0.057 3.943 26 N -0.549 5.549 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.055 0.945 41 H -0.008 1.008 42 H 0.005 0.995 43 H 0.257 0.743 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 -18.118 -7.627 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.006 4.006 4 N -0.347 5.347 5 S 0.298 5.702 6 C -0.091 4.091 7 N -0.153 5.153 8 C -0.059 4.059 9 C -0.181 4.181 10 C -0.055 4.055 11 N -0.275 5.275 12 C -0.004 4.004 13 H 0.084 0.916 14 C -0.231 4.231 15 C -0.004 4.004 16 C -0.531 4.531 17 H 0.075 0.925 18 C -0.194 4.194 19 N -0.579 5.579 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.198 1.198 24 C -0.051 4.051 25 C -0.069 4.069 26 N -0.278 5.278 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.010 0.990 42 H 0.023 0.977 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.024 -17.930 -6.170 20.590 hybrid contribution -0.140 0.510 0.144 0.548 sum -8.165 -17.420 -6.026 20.160 Atomic orbital electron populations 1.21675 0.92379 1.03930 1.01654 1.20405 0.97494 0.84306 1.05501 1.24067 0.94243 1.00416 0.81852 1.77511 1.27757 1.02497 1.26897 1.85581 1.63005 1.18558 1.03045 1.27168 0.92844 0.93534 0.95545 1.58381 1.31174 1.12677 1.13109 1.22316 0.87437 1.00857 0.95331 1.22060 1.00487 0.94769 1.00757 1.21081 0.93332 0.95410 0.95636 1.58858 1.04520 1.02597 1.61530 1.21548 0.98872 0.87860 0.92119 0.91641 1.22380 1.01270 1.02168 0.97302 1.19122 0.93861 0.93670 0.93702 1.21427 1.01788 1.35054 0.94813 0.92504 1.25683 0.95320 0.96227 1.02148 1.70054 1.11667 1.42170 1.34029 0.85877 0.78040 0.78260 0.81097 1.19939 1.21635 1.19768 1.21654 0.93575 0.93095 0.96777 1.22333 1.00707 0.85222 0.98661 1.67440 1.24954 1.05499 1.29948 0.88638 0.93576 0.92742 0.87408 0.88196 0.88826 0.87592 0.93144 0.87714 0.91054 0.94357 0.92825 0.91392 0.92620 0.99006 0.97726 0.93419 0.91672 0.89897 0.91858 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.03 -0.61 6.47 29.85 0.19 -0.42 16 3 C 0.28 7.55 6.82 139.39 0.95 8.50 16 4 N -0.52 -15.80 12.15 -60.46 -0.73 -16.54 16 5 S 0.16 5.02 21.94 -56.49 -1.24 3.78 16 6 C 0.29 8.28 6.80 178.86 1.22 9.50 16 7 N -0.43 -11.41 4.80 -709.23 -3.40 -14.81 16 8 C 0.07 1.42 5.12 85.35 0.44 1.86 16 9 C -0.14 -3.14 5.63 30.38 0.17 -2.97 16 10 C 0.07 1.83 4.69 88.05 0.41 2.24 16 11 N -0.55 -17.49 3.57 -886.91 -3.17 -20.66 16 12 C 0.10 3.68 2.23 44.91 0.10 3.78 16 13 H 0.07 2.39 7.81 -2.39 -0.02 2.37 16 14 C -0.17 -4.92 8.68 71.98 0.63 -4.29 16 15 C 0.03 1.60 4.34 29.85 0.13 1.72 16 16 C -0.49 -26.24 8.79 25.60 0.22 -26.01 16 17 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.94 -55.54 13.29 21.45 0.28 -55.25 16 20 Si 0.94 44.54 29.54 68.60 2.03 46.56 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 C 0.08 2.28 3.80 85.43 0.32 2.60 16 25 C 0.06 1.71 4.42 85.42 0.38 2.08 16 26 N -0.55 -15.29 10.12 -200.03 -2.02 -17.32 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.93 7.47 -2.39 -0.02 1.92 16 33 H 0.11 1.97 6.51 -2.39 -0.02 1.95 16 34 H 0.05 1.41 7.03 -2.39 -0.02 1.39 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.78 7.81 -2.39 -0.02 1.76 16 37 H 0.04 0.81 6.32 -2.39 -0.02 0.79 16 38 H 0.05 1.52 6.91 -2.38 -0.02 1.50 16 39 H 0.07 1.58 6.89 -2.39 -0.02 1.57 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.00 0.23 6.02 -2.39 -0.01 0.22 16 43 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.07 1.65 6.59 -2.39 -0.02 1.64 16 45 H 0.08 2.93 5.50 -2.39 -0.01 2.91 16 46 H 0.06 2.17 6.12 -2.39 -0.01 2.16 16 47 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.01 370.17 -0.97 -64.97 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.96 Total: 11.39 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.34 Total: -2.12 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -9.05 Total: -124.58 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.24 Total: 3.78 kcal Total: -64.01 -0.97 -64.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351233048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.203 kcal (2) G-P(sol) polarization free energy of solvation -64.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds