Wall clock time and date at job start Tue Mar 31 2020 13:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47010 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47034 * 299.99578 * 3 2 1 6 6 H 1.48499 * 109.47092 * 59.99797 * 3 2 1 7 7 C 1.37878 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 159.11141 * 7 2 1 9 9 C 1.50700 * 120.00122 * 339.11499 * 7 2 1 10 10 C 1.53005 * 115.54765 * 323.67001 * 9 7 2 11 11 N 1.46497 * 109.47450 * 282.52207 * 10 9 7 12 12 C 1.34771 * 120.00202 * 175.19258 * 11 10 9 13 13 O 1.21594 * 119.99874 * 5.15289 * 12 11 10 14 14 N 1.34770 * 120.00135 * 185.14702 * 12 11 10 15 15 C 1.47151 * 120.98232 * 355.05006 * 14 12 11 16 16 C 1.53297 * 108.38592 * 129.44252 * 15 14 12 17 17 O 1.42964 * 109.22133 * 52.30023 * 16 15 14 18 18 C 1.42960 * 114.16926 * 297.42112 * 17 16 15 19 19 H 1.09003 * 109.51341 * 302.65705 * 18 17 16 20 20 C 1.52997 * 109.51408 * 182.50477 * 18 17 16 21 21 H 1.08998 * 110.33719 * 177.25009 * 20 18 17 22 22 C 1.54485 * 110.37258 * 55.00128 * 20 18 17 23 23 C 1.54509 * 104.06145 * 217.19160 * 22 20 18 24 24 C 1.54476 * 104.06466 * 359.97438 * 23 22 20 25 25 O 1.44420 * 104.80409 * 23.98201 * 24 23 22 26 26 C 1.47160 * 120.98372 * 174.76947 * 14 12 11 27 27 C 1.52999 * 117.52090 * 109.37014 * 9 7 2 28 28 C 1.53002 * 117.49939 * 178.00332 * 9 7 2 29 29 H 0.97003 * 119.99755 * 5.01471 * 1 2 3 30 30 H 1.08996 * 109.46718 * 162.51824 * 10 9 7 31 31 H 1.08998 * 109.46649 * 42.52282 * 10 9 7 32 32 H 0.97003 * 119.99995 * 355.19593 * 11 10 9 33 33 H 1.08994 * 109.68447 * 249.16471 * 15 14 12 34 34 H 1.08995 * 109.68204 * 9.68465 * 15 14 12 35 35 H 1.09001 * 109.51533 * 172.22657 * 16 15 14 36 36 H 1.09003 * 109.50895 * 292.38143 * 16 15 14 37 37 H 1.09005 * 110.50558 * 335.83342 * 22 20 18 38 38 H 1.08997 * 110.51209 * 98.54667 * 22 20 18 39 39 H 1.09000 * 110.51281 * 118.64561 * 23 22 20 40 40 H 1.08997 * 110.51165 * 241.21458 * 23 22 20 41 41 H 1.09008 * 110.37371 * 142.81100 * 24 23 22 42 42 H 1.08993 * 110.37310 * 265.03584 * 24 23 22 43 43 H 1.09003 * 109.67829 * 350.28400 * 26 14 12 44 44 H 1.08997 * 109.68339 * 110.83463 * 26 14 12 45 45 H 1.08992 * 117.50021 * 214.97231 * 27 9 7 46 46 H 1.09007 * 117.49369 * 359.97438 * 27 9 7 47 47 H 1.09001 * 117.49764 * 359.97438 * 28 9 7 48 48 H 1.09004 * 117.49737 * 144.97416 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0313 -1.2250 -0.3329 9 6 1.3253 -2.4561 0.4664 10 6 0.3489 -2.2882 1.6323 11 7 1.0999 -2.1594 2.8836 12 6 0.4501 -1.9038 4.0363 13 8 -0.7653 -1.8730 4.0551 14 7 1.1473 -1.6825 5.1682 15 6 2.6121 -1.8207 5.1948 16 6 3.2060 -0.5538 5.8210 17 8 2.5687 -0.3061 7.0765 18 6 1.1648 -0.0538 6.9807 19 1 0.9918 0.7952 6.3192 20 6 0.6054 0.2575 8.3703 21 1 -0.4553 0.4998 8.3061 22 6 1.3856 1.4247 9.0150 23 6 1.4667 1.0417 10.5096 24 6 0.7255 -0.3112 10.5913 25 8 0.8140 -0.8614 9.2590 26 6 0.4670 -1.2896 6.4125 27 6 0.9884 -3.5093 -0.5911 28 6 2.1283 -3.7567 0.3991 29 1 -0.4850 0.8369 -0.0734 30 1 -0.3035 -3.1595 1.6881 31 1 -0.2530 -1.3930 1.4760 32 1 2.0649 -2.2580 2.8824 33 1 2.8881 -2.6895 5.7922 34 1 2.9881 -1.9395 4.1787 35 1 4.2760 -0.6917 5.9767 36 1 3.0404 0.2933 5.1553 37 1 2.3845 1.4998 8.5852 38 1 0.8433 2.3618 8.8897 39 1 2.5057 0.9276 10.8189 40 1 0.9667 1.7908 11.1235 41 1 1.2165 -0.9703 11.3074 42 1 -0.3164 -0.1566 10.8714 43 1 -0.5768 -1.0563 6.2022 44 1 0.5233 -2.1041 7.1346 45 1 0.0713 -4.0825 -0.4562 46 1 1.2577 -3.2892 -1.6242 47 1 3.1478 -3.6996 0.0175 48 1 1.9612 -4.4926 1.1857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374042705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:12 Heat of formation + Delta-G solvation = -78.747009 kcal Electronic energy + Delta-G solvation = -29017.201945 eV Core-core repulsion = 25073.674057 eV Total energy + Delta-G solvation = -3943.527888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42376 -39.37031 -38.01536 -36.72155 -34.39486 -33.29606 -32.36128 -32.26787 -32.02918 -28.91159 -27.55303 -25.91249 -25.05882 -23.96500 -22.87535 -21.52855 -21.22209 -20.90845 -19.33349 -19.13230 -17.97863 -17.06525 -16.46289 -16.19947 -16.04566 -15.60911 -15.27766 -15.00944 -14.73231 -14.64812 -14.39165 -13.94960 -13.90595 -13.66497 -13.47397 -13.14917 -12.73776 -12.61797 -11.94487 -11.83513 -11.70905 -11.63095 -11.55337 -11.41531 -11.27050 -11.01452 -10.82982 -10.79792 -10.60424 -10.51626 -10.32658 -10.05817 -9.93603 -9.67970 -9.32490 -9.26974 -8.81165 -8.43511 -8.19275 -7.79005 -6.15938 -4.14463 2.99885 3.19107 3.29902 3.32163 3.54781 3.68788 3.80995 4.29037 4.39877 4.46193 4.49745 4.70941 4.77735 4.89166 4.91457 5.02255 5.06421 5.13932 5.21792 5.28214 5.34263 5.44258 5.48609 5.51601 5.59720 5.61080 5.76548 5.79649 5.82657 5.96174 5.99387 6.07686 6.30150 6.52776 6.59460 6.61495 6.64818 6.68178 6.91538 7.00279 7.09352 7.27209 7.38727 7.52128 7.63211 7.95070 8.33203 8.62363 8.80739 9.24499 9.42596 10.86267 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.003428 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.426298 B = 8166.232708 C = 8872.019046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.885 3.115 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.162 3.838 11 N -0.721 5.721 12 C 0.704 3.296 13 O -0.597 6.597 14 N -0.640 5.640 15 C 0.078 3.922 16 C 0.048 3.952 17 O -0.367 6.367 18 C 0.084 3.916 19 H 0.075 0.925 20 C 0.085 3.915 21 H 0.085 0.915 22 C -0.148 4.148 23 C -0.152 4.152 24 C 0.044 3.956 25 O -0.358 6.358 26 C 0.109 3.891 27 C -0.192 4.192 28 C -0.212 4.212 29 H 0.265 0.735 30 H 0.028 0.972 31 H 0.117 0.883 32 H 0.390 0.610 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 1.602 18.525 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.712 3.288 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.039 3.961 10 C 0.039 3.961 11 N -0.374 5.374 12 C 0.406 3.594 13 O -0.476 6.476 14 N -0.380 5.380 15 C -0.046 4.046 16 C -0.030 4.030 17 O -0.285 6.285 18 C 0.025 3.975 19 H 0.092 0.908 20 C 0.027 3.973 21 H 0.102 0.898 22 C -0.186 4.186 23 C -0.190 4.190 24 C -0.033 4.033 25 O -0.277 6.277 26 C -0.015 4.015 27 C -0.230 4.230 28 C -0.249 4.249 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.135 0.865 32 H 0.225 0.775 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.851 1.532 18.637 19.092 hybrid contribution 0.834 0.962 -0.347 1.319 sum 4.685 2.494 18.290 19.045 Atomic orbital electron populations 1.69874 1.06204 1.27140 1.46512 1.24954 0.94561 0.99132 0.94082 0.86659 0.80540 0.83802 0.77802 1.19534 1.20973 1.20829 1.20461 0.98225 0.90277 1.44849 0.91871 1.19160 0.95309 0.88274 0.93317 1.21148 0.93167 1.02821 0.78974 1.45362 1.10464 1.75015 1.06605 1.15882 0.85240 0.78217 0.80099 1.90860 1.11651 1.60049 1.84991 1.47258 1.06250 1.74759 1.09719 1.22260 0.81083 0.98820 1.02409 1.22986 0.97476 0.96628 0.85920 1.87959 1.20040 1.91408 1.29123 1.22459 0.82526 0.97619 0.94913 0.90764 1.23012 0.98510 0.86634 0.89157 0.89751 1.22916 1.02544 0.98033 0.95072 1.22901 1.01829 0.97556 0.96731 1.23377 0.99505 0.94499 0.85925 1.89201 1.93213 1.30124 1.15184 1.21857 0.97934 0.96729 0.84992 1.22928 0.97191 1.06607 0.96308 1.22889 0.96022 1.03020 1.02983 0.92512 0.95345 0.86545 0.77454 0.90855 0.89051 0.87664 0.92415 0.89408 0.90705 0.90687 0.90822 0.89227 0.92424 0.88381 0.90513 0.91535 0.90117 0.90550 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.74 11.10 55.43 0.62 -23.12 16 2 C 0.08 2.03 5.07 -17.82 -0.09 1.94 16 3 Si 0.88 20.20 29.59 -169.99 -5.03 15.17 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -12.93 8.98 -34.44 -0.31 -13.24 16 8 H 0.06 1.62 7.90 -52.49 -0.41 1.21 16 9 C 0.04 0.96 1.71 -155.66 -0.27 0.69 16 10 C 0.16 3.89 5.30 -4.04 -0.02 3.87 16 11 N -0.72 -15.12 5.46 -65.23 -0.36 -15.48 16 12 C 0.70 14.88 8.31 -86.93 -0.72 14.15 16 13 O -0.60 -14.79 15.85 5.28 0.08 -14.70 16 14 N -0.64 -10.78 3.03 -178.26 -0.54 -11.32 16 15 C 0.08 1.04 6.63 -3.53 -0.02 1.02 16 16 C 0.05 0.57 6.99 37.31 0.26 0.83 16 17 O -0.37 -4.83 9.25 -42.03 -0.39 -5.21 16 18 C 0.08 1.09 2.69 -26.80 -0.07 1.02 16 19 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 20 C 0.09 0.94 3.14 -25.95 -0.08 0.85 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.15 -1.35 6.53 -25.16 -0.16 -1.52 16 23 C -0.15 -1.17 7.09 -25.16 -0.18 -1.35 16 24 C 0.04 0.38 7.63 37.93 0.29 0.67 16 25 O -0.36 -4.35 10.51 -42.03 -0.44 -4.79 16 26 C 0.11 1.65 5.84 -3.75 -0.02 1.63 16 27 C -0.19 -4.26 9.88 -26.73 -0.26 -4.53 16 28 C -0.21 -4.34 9.95 -26.73 -0.27 -4.61 16 29 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 30 H 0.03 0.69 7.98 -51.93 -0.41 0.27 16 31 H 0.12 3.23 5.46 -51.93 -0.28 2.95 16 32 H 0.39 7.32 5.99 -40.82 -0.24 7.08 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.19 5.66 -51.93 -0.29 0.89 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.90 7.07 -51.93 -0.37 0.53 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.10 1.61 7.12 -51.93 -0.37 1.24 16 44 H 0.08 1.16 7.50 -51.93 -0.39 0.77 16 45 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 46 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 47 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -31.19 378.79 -10.11 -41.30 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.83 Total: 11.01 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.93 Total: 1.43 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.28 Total: -49.92 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.75 Total: -24.71 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.19 -10.11 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374042705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.446 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds