Wall clock time and date at job start Tue Mar 31 2020 13:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47010 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47034 * 299.99578 * 3 2 1 6 6 H 1.48499 * 109.47092 * 59.99797 * 3 2 1 7 7 C 1.37878 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00014 * 159.11141 * 7 2 1 9 9 C 1.50700 * 120.00122 * 339.11499 * 7 2 1 10 10 C 1.53005 * 115.54765 * 323.67001 * 9 7 2 11 11 N 1.46497 * 109.47450 * 282.52207 * 10 9 7 12 12 C 1.34771 * 120.00202 * 175.19258 * 11 10 9 13 13 O 1.21594 * 119.99874 * 5.15289 * 12 11 10 14 14 N 1.34770 * 120.00135 * 185.14702 * 12 11 10 15 15 C 1.47151 * 120.98232 * 355.05006 * 14 12 11 16 16 C 1.53297 * 108.38592 * 129.44252 * 15 14 12 17 17 O 1.42964 * 109.22133 * 52.30023 * 16 15 14 18 18 C 1.42960 * 114.16926 * 297.42112 * 17 16 15 19 19 H 1.09003 * 109.51341 * 302.65705 * 18 17 16 20 20 C 1.52997 * 109.51408 * 182.50477 * 18 17 16 21 21 H 1.08998 * 110.33719 * 177.25009 * 20 18 17 22 22 C 1.54485 * 110.37258 * 55.00128 * 20 18 17 23 23 C 1.54509 * 104.06145 * 217.19160 * 22 20 18 24 24 C 1.54476 * 104.06466 * 359.97438 * 23 22 20 25 25 O 1.44420 * 104.80409 * 23.98201 * 24 23 22 26 26 C 1.47160 * 120.98372 * 174.76947 * 14 12 11 27 27 C 1.52999 * 117.52090 * 109.37014 * 9 7 2 28 28 C 1.53002 * 117.49939 * 178.00332 * 9 7 2 29 29 H 0.97003 * 119.99755 * 5.01471 * 1 2 3 30 30 H 1.08996 * 109.46718 * 162.51824 * 10 9 7 31 31 H 1.08998 * 109.46649 * 42.52282 * 10 9 7 32 32 H 0.97003 * 119.99995 * 355.19593 * 11 10 9 33 33 H 1.08994 * 109.68447 * 249.16471 * 15 14 12 34 34 H 1.08995 * 109.68204 * 9.68465 * 15 14 12 35 35 H 1.09001 * 109.51533 * 172.22657 * 16 15 14 36 36 H 1.09003 * 109.50895 * 292.38143 * 16 15 14 37 37 H 1.09005 * 110.50558 * 335.83342 * 22 20 18 38 38 H 1.08997 * 110.51209 * 98.54667 * 22 20 18 39 39 H 1.09000 * 110.51281 * 118.64561 * 23 22 20 40 40 H 1.08997 * 110.51165 * 241.21458 * 23 22 20 41 41 H 1.09008 * 110.37371 * 142.81100 * 24 23 22 42 42 H 1.08993 * 110.37310 * 265.03584 * 24 23 22 43 43 H 1.09003 * 109.67829 * 350.28400 * 26 14 12 44 44 H 1.08997 * 109.68339 * 110.83463 * 26 14 12 45 45 H 1.08992 * 117.50021 * 214.97231 * 27 9 7 46 46 H 1.09007 * 117.49369 * 359.97438 * 27 9 7 47 47 H 1.09001 * 117.49764 * 359.97438 * 28 9 7 48 48 H 1.09004 * 117.49737 * 144.97416 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0313 -1.2250 -0.3329 9 6 1.3253 -2.4561 0.4664 10 6 0.3489 -2.2882 1.6323 11 7 1.0999 -2.1594 2.8836 12 6 0.4501 -1.9038 4.0363 13 8 -0.7653 -1.8730 4.0551 14 7 1.1473 -1.6825 5.1682 15 6 2.6121 -1.8207 5.1948 16 6 3.2060 -0.5538 5.8210 17 8 2.5687 -0.3061 7.0765 18 6 1.1648 -0.0538 6.9807 19 1 0.9918 0.7952 6.3192 20 6 0.6054 0.2575 8.3703 21 1 -0.4553 0.4998 8.3061 22 6 1.3856 1.4247 9.0150 23 6 1.4667 1.0417 10.5096 24 6 0.7255 -0.3112 10.5913 25 8 0.8140 -0.8614 9.2590 26 6 0.4670 -1.2896 6.4125 27 6 0.9884 -3.5093 -0.5911 28 6 2.1283 -3.7567 0.3991 29 1 -0.4850 0.8369 -0.0734 30 1 -0.3035 -3.1595 1.6881 31 1 -0.2530 -1.3930 1.4760 32 1 2.0649 -2.2580 2.8824 33 1 2.8881 -2.6895 5.7922 34 1 2.9881 -1.9395 4.1787 35 1 4.2760 -0.6917 5.9767 36 1 3.0404 0.2933 5.1553 37 1 2.3845 1.4998 8.5852 38 1 0.8433 2.3618 8.8897 39 1 2.5057 0.9276 10.8189 40 1 0.9667 1.7908 11.1235 41 1 1.2165 -0.9703 11.3074 42 1 -0.3164 -0.1566 10.8714 43 1 -0.5768 -1.0563 6.2022 44 1 0.5233 -2.1041 7.1346 45 1 0.0713 -4.0825 -0.4562 46 1 1.2577 -3.2892 -1.6242 47 1 3.1478 -3.6996 0.0175 48 1 1.9612 -4.4926 1.1857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374042705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:11 Heat of formation + Delta-G solvation = -98.562924 kcal Electronic energy + Delta-G solvation = -29018.061227 eV Core-core repulsion = 25073.674057 eV Total energy + Delta-G solvation = -3944.387170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66734 -40.51272 -39.22155 -38.45713 -35.81525 -34.88391 -34.24169 -33.34836 -32.86649 -29.89178 -28.89011 -27.72344 -26.67742 -25.06145 -23.92113 -23.00014 -22.31133 -21.85741 -21.18081 -20.63211 -19.49417 -18.15209 -17.91458 -17.38112 -17.12005 -16.82192 -16.73873 -16.47765 -16.22541 -15.70249 -15.62014 -15.42529 -15.19999 -14.93125 -14.69294 -14.53090 -14.29334 -13.64171 -13.62367 -13.41958 -12.95500 -12.86005 -12.68419 -12.63811 -12.53754 -12.29468 -12.27426 -12.09342 -12.07371 -11.73490 -11.50094 -11.43631 -11.23787 -11.18995 -11.01640 -10.71781 -10.63854 -10.17218 -9.91549 -9.37948 -8.13713 -6.17143 1.37426 1.43244 1.52819 1.56283 2.15484 2.39181 2.59887 2.88343 2.89723 3.06930 3.51594 3.65684 3.72929 3.83395 3.94516 4.03207 4.06240 4.11232 4.20107 4.23457 4.30444 4.37822 4.46081 4.52489 4.56579 4.70863 4.71471 4.73323 4.79117 4.81904 4.87060 4.94253 4.94849 5.00982 5.07816 5.16081 5.23745 5.24695 5.40640 5.54123 5.57158 5.73983 5.87177 5.90554 5.98542 6.09126 6.37449 6.79812 7.05297 7.42134 7.59509 8.87692 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.003428 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.426298 B = 8166.232708 C = 8872.019046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.257 1.257 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.013 3.987 10 C 0.175 3.825 11 N -0.714 5.714 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.635 5.635 15 C 0.073 3.927 16 C 0.049 3.951 17 O -0.369 6.369 18 C 0.089 3.911 19 H 0.068 0.932 20 C 0.083 3.917 21 H 0.093 0.907 22 C -0.146 4.146 23 C -0.146 4.146 24 C 0.037 3.963 25 O -0.386 6.386 26 C 0.109 3.891 27 C -0.198 4.198 28 C -0.177 4.177 29 H 0.261 0.739 30 H 0.018 0.982 31 H 0.079 0.921 32 H 0.402 0.598 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 1.830 20.081 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.169 4.169 3 Si 0.769 3.231 4 H -0.181 1.181 5 H -0.211 1.211 6 H -0.214 1.214 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.012 3.988 10 C 0.051 3.949 11 N -0.369 5.369 12 C 0.400 3.600 13 O -0.524 6.524 14 N -0.374 5.374 15 C -0.049 4.049 16 C -0.029 4.029 17 O -0.287 6.287 18 C 0.030 3.970 19 H 0.086 0.914 20 C 0.025 3.975 21 H 0.111 0.889 22 C -0.183 4.183 23 C -0.184 4.184 24 C -0.040 4.040 25 O -0.305 6.305 26 C -0.014 4.014 27 C -0.237 4.237 28 C -0.214 4.214 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.239 0.761 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.157 0.843 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.108 0.892 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.169 1.755 20.224 21.216 hybrid contribution 0.134 0.821 -0.806 1.158 sum 6.303 2.576 19.417 20.577 Atomic orbital electron populations 1.70016 1.07621 1.27441 1.48082 1.25621 0.95074 1.02077 0.94083 0.85746 0.80025 0.80135 0.77238 1.18076 1.21094 1.21357 1.20707 0.98146 0.91271 1.44388 0.91848 1.19152 0.96810 0.89007 0.93846 1.20724 0.93220 1.00448 0.80503 1.45130 1.10828 1.75116 1.05800 1.16077 0.84872 0.78029 0.81030 1.90820 1.13791 1.61893 1.85872 1.47314 1.07851 1.73443 1.08775 1.22554 0.78611 1.00490 1.03285 1.23126 0.99082 0.95351 0.85311 1.87973 1.19821 1.91255 1.29664 1.22406 0.82496 0.95911 0.96149 0.91416 1.23071 0.99157 0.87223 0.88052 0.88930 1.22904 1.01728 0.97861 0.95835 1.22891 1.02112 0.97491 0.95895 1.23599 1.00621 0.95153 0.84579 1.89161 1.93434 1.31122 1.16792 1.21933 0.97299 0.97972 0.84192 1.22938 0.98525 1.06156 0.96082 1.22889 0.95896 1.00637 1.02026 0.92949 0.96384 0.90303 0.76067 0.89033 0.88629 0.84269 0.93337 0.90529 0.89223 0.90533 0.88757 0.88265 0.91234 0.90277 0.90362 0.91037 0.90621 0.89224 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.54 11.10 21.45 0.24 -50.30 16 2 C 0.03 1.74 5.07 84.65 0.43 2.17 16 3 Si 0.94 41.49 29.59 68.60 2.03 43.52 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.51 -25.96 8.98 25.60 0.23 -25.73 16 8 H 0.06 3.17 7.90 -2.91 -0.02 3.15 16 9 C 0.01 0.60 1.71 -52.93 -0.09 0.51 16 10 C 0.18 8.59 5.30 86.38 0.46 9.04 16 11 N -0.71 -30.03 5.46 -478.54 -2.61 -32.65 16 12 C 0.70 30.02 8.31 179.06 1.49 31.51 16 13 O -0.64 -33.04 15.85 -4.01 -0.06 -33.11 16 14 N -0.64 -21.28 3.03 -836.16 -2.53 -23.81 16 15 C 0.07 1.82 6.63 86.35 0.57 2.39 16 16 C 0.05 1.06 6.99 72.08 0.50 1.56 16 17 O -0.37 -9.09 9.25 -142.48 -1.32 -10.40 16 18 C 0.09 2.27 2.69 30.55 0.08 2.36 16 19 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 20 C 0.08 1.74 3.14 31.10 0.10 1.84 16 21 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 22 C -0.15 -2.39 6.53 31.61 0.21 -2.18 16 23 C -0.15 -1.89 7.09 31.61 0.22 -1.67 16 24 C 0.04 0.56 7.63 72.48 0.55 1.11 16 25 O -0.39 -8.90 10.51 -142.48 -1.50 -10.40 16 26 C 0.11 3.35 5.84 86.21 0.50 3.86 16 27 C -0.20 -8.67 9.88 30.60 0.30 -8.37 16 28 C -0.18 -6.88 9.95 30.60 0.30 -6.57 16 29 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 30 H 0.02 0.90 7.98 -2.39 -0.02 0.88 16 31 H 0.08 4.55 5.46 -2.39 -0.01 4.54 16 32 H 0.40 14.68 5.99 -92.71 -0.56 14.13 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 2.29 5.66 -2.39 -0.01 2.28 16 35 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.44 7.07 -2.38 -0.02 1.42 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.08 2.72 7.12 -2.39 -0.02 2.70 16 44 H 0.08 2.37 7.50 -2.39 -0.02 2.36 16 45 H 0.07 3.01 8.10 -2.39 -0.02 2.99 16 46 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 47 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 48 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -68.29 378.79 0.51 -67.78 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: 0.40 Total: 37.54 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.86 Total: 11.82 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.90 Total: -106.76 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -2.88 Total: -53.91 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -68.29 0.51 -67.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374042705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.782 kcal (2) G-P(sol) polarization free energy of solvation -68.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds