Wall clock time and date at job start Tue Mar 31 2020 13:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48500 * 109.47417 * 273.03532 * 3 2 1 5 5 H 1.48501 * 109.46999 * 33.03569 * 3 2 1 6 6 H 1.48502 * 109.46922 * 153.03317 * 3 2 1 7 7 C 1.37879 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99425 * 4.40535 * 7 2 1 9 9 C 1.50695 * 120.00147 * 184.40520 * 7 2 1 10 10 C 1.52999 * 115.55049 * 306.27700 * 9 7 2 11 11 N 1.46504 * 109.47022 * 304.63539 * 10 9 7 12 12 C 1.34778 * 120.00020 * 174.89412 * 11 10 9 13 13 O 1.21585 * 120.00014 * 4.84497 * 12 11 10 14 14 N 1.34774 * 119.99789 * 184.85401 * 12 11 10 15 15 C 1.47147 * 120.98622 * 355.02028 * 14 12 11 16 16 C 1.53291 * 108.39215 * 129.44282 * 15 14 12 17 17 O 1.42960 * 109.26104 * 52.27151 * 16 15 14 18 18 C 1.42955 * 114.17458 * 297.50603 * 17 16 15 19 19 C 1.47154 * 120.97872 * 174.99565 * 14 12 11 20 20 H 1.09004 * 109.68308 * 110.83396 * 19 14 12 21 21 C 1.52997 * 109.68676 * 350.31592 * 19 14 12 22 22 H 1.08999 * 109.86747 * 59.73524 * 21 19 14 23 23 C 1.54089 * 109.88438 * 180.74538 * 21 19 14 24 24 C 1.54813 * 104.19109 * 121.45317 * 23 21 19 25 25 C 1.54998 * 102.09072 * 20.88304 * 24 23 21 26 26 O 1.43747 * 109.87868 * 298.58006 * 21 19 14 27 27 C 1.52995 * 117.49726 * 91.94734 * 9 7 2 28 28 C 1.53000 * 117.49938 * 160.60697 * 9 7 2 29 29 H 0.96998 * 119.99987 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47328 * 184.63994 * 10 9 7 31 31 H 1.08991 * 109.47568 * 64.63450 * 10 9 7 32 32 H 0.97002 * 120.00246 * 354.88802 * 11 10 9 33 33 H 1.08997 * 109.67977 * 9.71451 * 15 14 12 34 34 H 1.09007 * 109.67971 * 249.16891 * 15 14 12 35 35 H 1.08996 * 109.51650 * 172.22653 * 16 15 14 36 36 H 1.08996 * 109.51003 * 292.33082 * 16 15 14 37 37 H 1.08998 * 109.47049 * 302.57186 * 18 17 16 38 38 H 1.09003 * 109.51510 * 182.44538 * 18 17 16 39 39 H 1.08998 * 110.49332 * 240.13173 * 23 21 19 40 40 H 1.09007 * 110.48764 * 2.64928 * 23 21 19 41 41 H 1.08999 * 110.90765 * 139.07969 * 24 23 21 42 42 H 1.09002 * 110.90832 * 262.65109 * 24 23 21 43 43 H 1.09002 * 110.62062 * 81.47423 * 25 24 23 44 44 H 1.09000 * 110.61747 * 204.32031 * 25 24 23 45 45 H 1.09010 * 117.49666 * 214.99962 * 27 9 7 46 46 H 1.08998 * 117.50181 * 0.02562 * 27 9 7 47 47 H 1.09005 * 117.49845 * 359.97438 * 28 9 7 48 48 H 1.08998 * 117.50133 * 144.97576 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4325 2.0835 -1.3981 5 1 1.4802 2.6332 0.7633 6 1 3.5774 1.4223 0.6349 7 6 2.0045 -1.1941 -0.0005 8 1 1.4668 -2.1280 -0.0728 9 6 3.5081 -1.1961 0.0997 10 6 4.2396 -0.3376 -0.9342 11 7 3.8301 -0.7412 -2.2817 12 6 4.2688 -0.0525 -3.3539 13 8 5.0731 0.8479 -3.2107 14 7 3.8156 -0.3618 -4.5849 15 6 2.9267 -1.5151 -4.7974 16 6 1.7127 -1.0472 -5.6080 17 8 2.1633 -0.3681 -6.7825 18 6 2.9188 0.8168 -6.5202 19 6 4.1947 0.4443 -5.7563 20 1 4.8538 -0.1351 -6.4029 21 6 4.9109 1.7158 -5.2970 22 1 5.8063 1.4536 -4.7333 23 6 5.2935 2.5724 -6.5193 24 6 4.5824 3.9252 -6.2722 25 6 4.3419 3.8908 -4.7414 26 8 4.0298 2.5054 -4.4807 27 6 4.1228 -1.2958 1.4972 28 6 4.1847 -2.4937 0.5463 29 1 -0.4850 0.8400 0.0004 30 1 5.3154 -0.4750 -0.8249 31 1 3.9896 0.7116 -0.7775 32 1 3.2434 -1.5042 -2.4022 33 1 2.5969 -1.9064 -3.8350 34 1 3.4582 -2.2918 -5.3474 35 1 1.1116 -1.9101 -5.8943 36 1 1.1109 -0.3687 -5.0035 37 1 2.3218 1.5028 -5.9193 38 1 3.1854 1.2948 -7.4628 39 1 6.3736 2.7119 -6.5646 40 1 4.9305 2.1106 -7.4376 41 1 5.2280 4.7597 -6.5459 42 1 3.6377 3.9728 -6.8140 43 1 5.2425 4.1889 -4.2045 44 1 3.5042 4.5332 -4.4699 45 1 5.0484 -0.7498 1.6801 46 1 3.4397 -1.3604 2.3441 47 1 3.5421 -3.3458 0.7679 48 1 5.1506 -2.7360 0.1032 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376415226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:02 Heat of formation + Delta-G solvation = -51.702352 kcal Electronic energy + Delta-G solvation = -30514.386055 eV Core-core repulsion = 26572.030912 eV Total energy + Delta-G solvation = -3942.355143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71880 -38.78108 -38.21007 -36.97913 -34.41285 -33.65899 -32.29770 -32.19333 -31.42562 -28.76317 -27.23616 -26.39117 -25.07590 -24.14275 -22.48698 -21.71364 -21.40340 -20.85919 -19.49313 -19.05836 -17.78387 -16.84659 -16.41565 -15.98762 -15.81990 -15.64658 -15.43513 -15.18936 -14.99540 -14.66268 -14.19415 -14.12023 -13.78054 -13.55619 -13.28427 -13.03794 -12.81879 -12.46101 -12.25826 -12.14439 -12.02971 -11.67790 -11.38191 -11.18543 -11.02384 -10.97605 -10.89551 -10.64330 -10.55807 -10.41466 -10.10065 -10.02215 -9.64878 -9.52469 -9.14777 -8.80631 -8.66070 -8.48543 -8.31529 -7.91448 -6.17958 -4.19538 2.89438 3.37905 3.43045 3.51009 3.78019 3.80870 4.13860 4.32496 4.40617 4.56605 4.75233 4.79388 4.90273 4.93914 5.05263 5.10775 5.15659 5.24582 5.29524 5.32819 5.39953 5.50329 5.65440 5.67763 5.72318 5.76934 5.80474 5.83261 5.90554 5.96215 6.01771 6.07004 6.17627 6.28047 6.31568 6.45168 6.49089 6.71213 6.72685 6.93068 7.09580 7.10909 7.23739 7.33650 7.40147 7.68336 8.40995 8.57443 8.83050 9.21218 9.46336 10.92596 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.005170 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.188539 B = 5415.065092 C = 5841.147019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.086 3.914 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.301 1.301 6 H -0.258 1.258 7 C -0.488 4.488 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.163 3.837 11 N -0.719 5.719 12 C 0.711 3.289 13 O -0.580 6.580 14 N -0.632 5.632 15 C 0.078 3.922 16 C 0.047 3.953 17 O -0.383 6.383 18 C 0.051 3.949 19 C 0.136 3.864 20 H 0.083 0.917 21 C 0.081 3.919 22 H 0.112 0.888 23 C -0.162 4.162 24 C -0.154 4.154 25 C 0.046 3.954 26 O -0.344 6.344 27 C -0.192 4.192 28 C -0.183 4.183 29 H 0.265 0.735 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 1.839 -14.190 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.117 4.117 3 Si 0.708 3.292 4 H -0.195 1.195 5 H -0.229 1.229 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.095 0.905 9 C -0.015 4.015 10 C 0.039 3.961 11 N -0.375 5.375 12 C 0.413 3.587 13 O -0.459 6.459 14 N -0.372 5.372 15 C -0.046 4.046 16 C -0.031 4.031 17 O -0.301 6.301 18 C -0.027 4.027 19 C 0.032 3.968 20 H 0.101 0.899 21 C 0.023 3.977 22 H 0.129 0.871 23 C -0.200 4.200 24 C -0.192 4.192 25 C -0.032 4.032 26 O -0.263 6.263 27 C -0.231 4.231 28 C -0.220 4.220 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.381 2.454 -14.075 16.564 hybrid contribution 0.218 0.736 0.144 0.781 sum 8.599 3.191 -13.932 16.680 Atomic orbital electron populations 1.69888 1.06327 1.27250 1.49323 1.24882 0.94502 0.99031 0.93317 0.87073 0.79542 0.83380 0.79190 1.19473 1.22854 1.18369 1.20231 0.86289 0.94473 1.51503 0.90453 1.19582 0.95367 0.95099 0.91405 1.21202 0.96204 0.98657 0.80033 1.45198 1.52990 1.34480 1.04813 1.15817 0.81191 0.81738 0.79934 1.90785 1.37717 1.33320 1.84052 1.47145 1.52677 1.31377 1.06000 1.22306 0.91766 0.88666 1.01822 1.22984 0.95212 0.97671 0.87213 1.87896 1.71812 1.39767 1.30666 1.23033 0.91937 0.87493 1.00195 1.21897 0.96482 0.91811 0.86630 0.89943 1.23155 0.95662 0.89476 0.89424 0.87058 1.23205 1.01241 0.96177 0.99420 1.23115 1.00967 0.97473 0.97603 1.23440 1.00724 0.85348 0.93657 1.89063 1.57809 1.14886 1.64507 1.23059 1.01646 1.02362 0.95992 1.22785 1.00665 0.92736 1.05811 0.92495 0.93712 0.92082 0.76301 0.88590 0.90928 0.87684 0.92013 0.91571 0.88343 0.90694 0.90754 0.90699 0.90869 0.92582 0.89767 0.91189 0.89253 0.89747 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 2 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 3 Si 0.88 22.64 24.76 -169.99 -4.21 18.43 16 4 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.26 -6.41 6.04 56.52 0.34 -6.06 16 7 C -0.49 -12.83 8.93 -34.44 -0.31 -13.14 16 8 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 9 C -0.01 -0.30 1.05 -155.67 -0.16 -0.46 16 10 C 0.16 3.62 4.52 -4.04 -0.02 3.60 16 11 N -0.72 -14.74 5.27 -65.23 -0.34 -15.09 16 12 C 0.71 14.32 7.78 -86.92 -0.68 13.65 16 13 O -0.58 -12.88 11.31 -18.52 -0.21 -13.08 16 14 N -0.63 -10.47 3.01 -170.43 -0.51 -10.99 16 15 C 0.08 1.08 6.63 -3.54 -0.02 1.05 16 16 C 0.05 0.62 6.98 37.31 0.26 0.88 16 17 O -0.38 -5.33 10.74 -35.23 -0.38 -5.71 16 18 C 0.05 0.68 5.82 37.31 0.22 0.90 16 19 C 0.14 1.95 2.88 -67.42 -0.19 1.76 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 21 C 0.08 1.22 2.22 -26.16 -0.06 1.16 16 22 H 0.11 1.95 5.93 -51.99 -0.31 1.64 16 23 C -0.16 -1.75 6.22 -25.21 -0.16 -1.90 16 24 C -0.15 -1.61 7.15 -24.72 -0.18 -1.79 16 25 C 0.05 0.64 7.72 38.21 0.29 0.94 16 26 O -0.34 -6.28 8.25 -59.04 -0.49 -6.77 16 27 C -0.19 -3.98 9.96 -26.70 -0.27 -4.24 16 28 C -0.18 -3.55 9.93 -26.69 -0.27 -3.81 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.04 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.06 1.52 2.99 -51.93 -0.16 1.36 16 32 H 0.40 7.71 5.66 -40.82 -0.23 7.48 16 33 H 0.10 1.36 5.66 -51.93 -0.29 1.06 16 34 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.03 7.43 -51.93 -0.39 0.64 16 38 H 0.10 1.06 6.72 -51.93 -0.35 0.71 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.67 6.32 -51.93 -0.33 0.35 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 46 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 47 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -32.40 361.85 -9.13 -41.53 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.59 Total: 10.85 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.63 Total: 0.90 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.08 Total: -51.60 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.07 Total: -25.56 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.21 Total: 18.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.40 -9.13 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376415226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.171 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds