Wall clock time and date at job start Tue Mar 31 2020 13:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86807 * 119.99845 * 2 1 4 4 H 1.48494 * 109.47457 * 270.00444 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00288 * 3 2 1 6 6 H 1.48499 * 109.47400 * 149.99781 * 3 2 1 7 7 C 1.40043 * 120.00585 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00511 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99733 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00250 * 8.85307 * 9 7 2 11 11 N 1.34772 * 120.00057 * 188.86353 * 9 7 2 12 12 C 1.46933 * 120.63025 * 6.24558 * 11 9 7 13 13 C 1.53185 * 108.77818 * 126.39266 * 12 11 9 14 14 C 1.53046 * 109.31290 * 54.63236 * 13 12 11 15 15 C 1.53033 * 109.53818 * 298.63533 * 14 13 12 16 16 C 1.46929 * 120.63297 * 186.24305 * 11 9 7 17 17 H 1.09003 * 109.58599 * 113.81878 * 16 11 9 18 18 C 1.53000 * 109.58342 * 353.39553 * 16 11 9 19 19 O 1.45199 * 109.46846 * 69.23574 * 18 16 11 20 20 C 1.34640 * 116.99618 * 179.97438 * 19 18 16 21 21 O 1.21517 * 120.00088 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00126 * 179.97438 * 20 19 18 23 23 C 1.46931 * 120.63013 * 359.71732 * 22 20 19 24 24 C 1.53624 * 108.54371 * 126.37016 * 23 22 20 25 25 C 1.53038 * 109.24052 * 54.85804 * 24 23 22 26 26 C 1.53045 * 109.53903 * 298.51163 * 25 24 23 27 27 C 1.46928 * 120.63190 * 180.02562 * 22 20 19 28 28 H 0.97002 * 120.00834 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58743 * 6.60163 * 12 11 9 30 30 H 1.09004 * 109.58103 * 246.17829 * 12 11 9 31 31 H 1.09002 * 109.49996 * 174.58343 * 13 12 11 32 32 H 1.08999 * 109.50088 * 294.68493 * 13 12 11 33 33 H 1.09003 * 109.45786 * 58.65797 * 14 13 12 34 34 H 1.08997 * 109.45851 * 178.61408 * 14 13 12 35 35 H 1.09003 * 109.49764 * 181.31468 * 15 14 13 36 36 H 1.08993 * 109.50274 * 301.38069 * 15 14 13 37 37 H 1.09000 * 109.46846 * 189.22859 * 18 16 11 38 38 H 1.08994 * 109.47123 * 309.23327 * 18 16 11 39 39 H 1.09004 * 109.58650 * 246.20566 * 23 22 20 40 40 H 1.08997 * 109.58351 * 6.62949 * 23 22 20 41 41 H 1.08998 * 109.63133 * 294.86542 * 24 23 22 42 42 H 1.08993 * 109.46012 * 174.74477 * 24 23 22 43 43 H 1.09001 * 109.46186 * 178.49275 * 25 24 23 44 44 H 1.08997 * 109.46087 * 58.53452 * 25 24 23 45 45 H 1.09003 * 109.49780 * 301.41514 * 26 25 24 46 46 H 1.08997 * 109.52090 * 181.33634 * 26 25 24 47 47 H 1.08992 * 109.58460 * 353.37323 * 27 22 20 48 48 H 1.09002 * 109.58469 * 113.79541 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4880 2.0466 -1.4000 5 1 1.4380 2.6527 0.7001 6 1 3.5382 1.4404 0.7001 7 6 2.0070 -1.2127 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4804 -0.0017 10 8 0.0692 -2.4867 -0.1643 11 7 1.9369 -3.6407 0.1776 12 6 3.3680 -3.6426 0.5108 13 6 3.5784 -4.4787 1.7770 14 6 2.9797 -5.8718 1.5689 15 6 1.4755 -5.7496 1.3152 16 6 1.2411 -4.9279 0.0437 17 1 1.6340 -5.4677 -0.8179 18 6 -0.2580 -4.6837 -0.1402 19 8 -0.4945 -4.0837 -1.4411 20 6 -1.7718 -3.8038 -1.7620 21 8 -2.6645 -4.0546 -0.9766 22 7 -2.0604 -3.2456 -2.9543 23 6 -0.9914 -2.9310 -3.9119 24 6 -1.3326 -3.5875 -5.2582 25 6 -2.7259 -3.1351 -5.7011 26 6 -3.7625 -3.5858 -4.6694 27 6 -3.4493 -2.9339 -3.3185 28 1 -0.4851 0.8400 -0.0004 29 1 3.7033 -2.6206 0.6879 30 1 3.9342 -4.0776 -0.3127 31 1 4.6455 -4.5681 1.9808 32 1 3.0860 -3.9933 2.6196 33 1 3.4553 -6.3470 0.7109 34 1 3.1498 -6.4768 2.4594 35 1 1.0457 -6.7435 1.1903 36 1 1.0028 -5.2527 2.1623 37 1 -0.7912 -5.6322 -0.0753 38 1 -0.6152 -4.0118 0.6401 39 1 -0.9192 -1.8505 -4.0370 40 1 -0.0434 -3.3223 -3.5428 41 1 -1.3194 -4.6721 -5.1505 42 1 -0.5980 -3.2872 -6.0052 43 1 -2.9608 -3.5778 -6.6691 44 1 -2.7453 -2.0485 -5.7847 45 1 -3.7264 -4.6704 -4.5672 46 1 -4.7574 -3.2841 -4.9969 47 1 -4.1235 -3.3271 -2.5577 48 1 -3.5730 -1.8537 -3.3962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376474358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:11 Heat of formation + Delta-G solvation = -129.177297 kcal Electronic energy + Delta-G solvation = -30136.581636 eV Core-core repulsion = 26190.866927 eV Total energy + Delta-G solvation = -3945.714709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54566 -40.51427 -38.84905 -37.50471 -36.97719 -34.64972 -33.90481 -33.26876 -32.81624 -32.01561 -28.56899 -27.75705 -26.27968 -25.05728 -24.20324 -23.29023 -22.45692 -21.74514 -20.78861 -20.37838 -18.99227 -18.24726 -18.00251 -17.65473 -17.12226 -16.34967 -16.04494 -15.89583 -15.50364 -15.37624 -15.23315 -15.09242 -14.86602 -14.61327 -14.48848 -14.32028 -14.06399 -13.60890 -13.49903 -13.36209 -13.24152 -12.99785 -12.93220 -12.76345 -12.37275 -12.28989 -12.06446 -11.95990 -11.88721 -11.75073 -11.69633 -11.54162 -11.51186 -11.31944 -11.25307 -11.20760 -10.84158 -9.68692 -9.24796 -8.87861 -8.16363 -6.72503 1.35096 1.38023 1.38974 1.52262 2.05041 2.23869 2.56455 2.83691 3.02939 3.71139 3.77066 3.86557 3.91943 3.96067 4.02438 4.08989 4.14599 4.27586 4.29923 4.30235 4.37260 4.41608 4.52170 4.58037 4.65182 4.79852 4.86670 4.92004 4.94319 4.97131 5.03063 5.04690 5.08336 5.09640 5.16342 5.18216 5.22296 5.27045 5.42357 5.42924 5.54774 5.61418 5.63670 5.86044 6.20738 6.43118 6.50289 6.96931 7.45736 7.54621 8.58943 8.78933 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.005508 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.874908 B = 5082.058975 C = 6925.113160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.566 4.566 8 H 0.084 0.916 9 C 0.543 3.457 10 O -0.584 6.584 11 N -0.643 5.643 12 C 0.118 3.882 13 C -0.130 4.130 14 C -0.104 4.104 15 C -0.120 4.120 16 C 0.155 3.845 17 H 0.071 0.929 18 C 0.116 3.884 19 O -0.341 6.341 20 C 0.657 3.343 21 O -0.630 6.630 22 N -0.597 5.597 23 C 0.119 3.881 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.122 4.122 27 C 0.121 3.879 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -8.873 -8.079 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.603 4.603 8 H 0.102 0.898 9 C 0.348 3.652 10 O -0.468 6.468 11 N -0.381 5.381 12 C -0.005 4.005 13 C -0.168 4.168 14 C -0.142 4.142 15 C -0.158 4.158 16 C 0.051 3.949 17 H 0.089 0.911 18 C 0.042 3.958 19 O -0.252 6.252 20 C 0.414 3.586 21 O -0.524 6.524 22 N -0.338 5.338 23 C -0.003 4.003 24 C -0.161 4.161 25 C -0.152 4.152 26 C -0.160 4.160 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.089 0.911 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.431 -8.894 -7.871 12.123 hybrid contribution -0.025 1.149 0.598 1.296 sum 2.406 -7.745 -7.273 10.893 Atomic orbital electron populations 1.70194 1.09115 1.28056 1.37500 1.26737 0.95264 1.04184 0.91580 0.85247 0.79022 0.76318 0.79134 1.18998 1.20526 1.17249 1.21398 0.94300 0.90056 1.54524 0.89797 1.18470 0.86832 0.83640 0.76247 1.90574 1.15837 1.85628 1.54779 1.48100 1.10283 1.04225 1.75465 1.21601 0.81079 1.01186 0.96652 1.21920 1.01957 0.95978 0.96966 1.21433 0.93005 0.96686 1.03028 1.21853 0.99011 0.99606 0.95376 1.21048 0.88983 0.86337 0.98565 0.91112 1.22705 0.96457 0.93449 0.83196 1.86216 1.25787 1.75002 1.38213 1.18175 0.81774 0.76515 0.82163 1.90794 1.48703 1.61382 1.51570 1.46892 1.09495 1.63058 1.14308 1.21740 0.89354 0.99718 0.89538 1.21969 0.99030 1.00423 0.94652 1.21534 0.93127 1.01681 0.98893 1.21908 1.00904 1.00450 0.92735 1.21734 0.79756 1.00126 0.98352 0.92399 0.90664 0.92122 0.88586 0.93756 0.90414 0.89596 0.88986 0.93534 0.93207 0.93372 0.92593 0.91656 0.91768 0.88565 0.88859 0.91326 0.91984 0.87894 0.91121 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.22 11.87 21.83 0.26 -49.96 16 2 C 0.04 2.06 5.50 85.30 0.47 2.53 16 3 Si 0.98 41.46 29.56 68.60 2.03 43.49 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.57 -31.49 8.70 24.83 0.22 -31.27 16 8 H 0.08 4.25 5.96 -2.91 -0.02 4.23 16 9 C 0.54 30.57 7.32 86.36 0.63 31.20 16 10 O -0.58 -36.67 8.74 19.76 0.17 -36.50 16 11 N -0.64 -28.55 2.97 -800.05 -2.38 -30.93 16 12 C 0.12 4.12 6.29 86.36 0.54 4.66 16 13 C -0.13 -3.53 6.08 30.67 0.19 -3.35 16 14 C -0.10 -2.44 5.88 30.62 0.18 -2.26 16 15 C -0.12 -3.58 5.36 30.67 0.16 -3.41 16 16 C 0.15 6.00 3.18 44.97 0.14 6.15 16 17 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 18 C 0.12 5.45 4.02 71.98 0.29 5.74 16 19 O -0.34 -17.20 6.55 -47.49 -0.31 -17.51 16 20 C 0.66 33.28 7.76 129.79 1.01 34.29 16 21 O -0.63 -35.20 15.55 19.79 0.31 -34.89 16 22 N -0.60 -24.61 2.97 -948.31 -2.81 -27.42 16 23 C 0.12 4.21 6.47 86.51 0.56 4.77 16 24 C -0.12 -2.93 6.10 30.82 0.19 -2.74 16 25 C -0.11 -2.26 5.88 30.62 0.18 -2.08 16 26 C -0.12 -2.77 6.08 30.69 0.19 -2.58 16 27 C 0.12 4.06 6.43 86.38 0.56 4.62 16 28 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 29 H 0.08 2.87 5.51 -2.39 -0.01 2.86 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 2.11 8.12 -2.39 -0.02 2.09 16 38 H 0.05 2.74 6.30 -2.39 -0.02 2.72 16 39 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.06 2.62 6.93 -2.39 -0.02 2.61 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 2.64 7.00 -2.39 -0.02 2.62 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -81.63 368.94 3.71 -77.92 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.94 Total: 29.55 kcal Atomic # 6 Polarization: 40.76 SS G_CDS: 5.50 Total: 46.26 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.93 Total: -108.31 kcal Atomic # 8 Polarization: -89.07 SS G_CDS: 0.17 Total: -88.90 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -81.63 3.71 -77.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376474358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.256 kcal (2) G-P(sol) polarization free energy of solvation -81.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds