Wall clock time and date at job start Tue Mar 31 2020 14:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99810 * 2 1 4 4 O 1.20818 * 120.00126 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99685 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.50010 * 59.93337 * 5 3 2 7 7 C 1.53041 * 109.49864 * 180.02562 * 5 3 2 8 8 C 1.53033 * 109.53877 * 181.31810 * 7 5 3 9 9 C 1.53192 * 109.31477 * 298.63202 * 8 7 5 10 10 N 1.46932 * 108.77525 * 54.63214 * 9 8 7 11 11 C 1.34772 * 120.62658 * 126.41246 * 10 9 8 12 12 O 1.21594 * 119.99929 * 175.11446 * 11 10 9 13 13 N 1.34776 * 120.00287 * 355.12180 * 11 10 9 14 14 C 1.46504 * 120.00128 * 184.67114 * 13 11 10 15 15 C 1.52999 * 109.47292 * 184.85745 * 14 13 11 16 16 C 1.50699 * 115.55079 * 305.45370 * 15 14 13 17 17 H 1.08005 * 120.00000 * 144.68606 * 16 15 14 18 18 C 1.37874 * 120.00026 * 324.68504 * 16 15 14 19 19 N 1.31518 * 120.00108 * 2.94898 * 18 16 15 20 20 Si 1.86802 * 120.00003 * 182.94781 * 18 16 15 21 21 H 1.48501 * 109.47078 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47065 * 120.00161 * 20 18 16 23 23 H 1.48506 * 109.46889 * 240.00156 * 20 18 16 24 24 C 1.53002 * 117.49742 * 159.78021 * 15 14 13 25 25 C 1.53003 * 117.49614 * 91.12420 * 15 14 13 26 26 C 1.46918 * 118.74115 * 306.39949 * 10 9 8 27 27 H 1.09000 * 109.47059 * 299.99798 * 1 2 3 28 28 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47365 * 59.99860 * 1 2 3 30 30 H 1.09001 * 109.46990 * 59.99861 * 6 5 3 31 31 H 1.08996 * 109.47074 * 179.97438 * 6 5 3 32 32 H 1.08998 * 109.47192 * 300.00604 * 6 5 3 33 33 H 1.09005 * 109.45161 * 301.33401 * 7 5 3 34 34 H 1.08992 * 109.46061 * 61.30385 * 7 5 3 35 35 H 1.08998 * 109.50326 * 58.58453 * 8 7 5 36 36 H 1.09005 * 109.49591 * 178.64997 * 8 7 5 37 37 H 1.08993 * 109.58991 * 174.42312 * 9 8 7 38 38 H 1.09005 * 109.58580 * 294.85162 * 9 8 7 39 39 H 0.96996 * 120.00361 * 4.66619 * 13 11 10 40 40 H 1.08996 * 109.46753 * 304.86149 * 14 13 11 41 41 H 1.09009 * 109.46848 * 64.85981 * 14 13 11 42 42 H 0.97001 * 119.99974 * 184.99764 * 19 18 16 43 43 H 1.08994 * 117.49615 * 0.02562 * 24 15 14 44 44 H 1.09002 * 117.49487 * 145.02481 * 24 15 14 45 45 H 1.08999 * 117.49817 * 214.98208 * 25 15 14 46 46 H 1.09005 * 117.49579 * 359.97417 * 25 15 14 47 47 H 1.09005 * 109.58633 * 293.81680 * 26 10 9 48 48 H 1.08992 * 109.59290 * 173.39343 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1136 0.5802 -1.2491 7 6 4.0010 2.7422 0.0002 8 6 5.5288 2.8235 -0.0336 9 6 6.0998 2.1495 1.2180 10 7 5.5699 0.7816 1.3020 11 6 6.4027 -0.2710 1.4234 12 8 5.9508 -1.3887 1.5813 13 7 7.7365 -0.0848 1.3701 14 6 8.6389 -1.2385 1.3992 15 6 10.0884 -0.7512 1.4490 16 6 10.4906 0.2049 0.3558 17 1 11.1879 1.0026 0.5656 18 6 9.9685 0.0614 -0.9121 19 7 9.0756 -0.8735 -1.1537 20 14 10.5293 1.1949 -2.2870 21 1 11.5323 2.1545 -1.7593 22 1 11.1390 0.3891 -3.3752 23 1 9.3618 1.9427 -2.8192 24 6 11.1472 -1.7340 1.9530 25 6 10.7200 -0.5532 2.8285 26 6 4.1151 0.5832 1.2514 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 3.7238 1.0734 -2.1396 31 1 5.2021 0.6379 -1.2493 32 1 3.8047 -0.4651 -1.2483 33 1 3.5912 3.2427 -0.8772 34 1 3.6313 3.2300 0.9021 35 1 5.9007 2.3143 -0.9227 36 1 5.8370 3.8688 -0.0572 37 1 7.1872 2.1167 1.1515 38 1 5.8025 2.7115 2.1035 39 1 8.0990 0.8130 1.3124 40 1 8.4281 -1.8425 2.2816 41 1 8.4885 -1.8401 0.5026 42 1 8.7620 -1.0223 -2.0595 43 1 10.8111 -2.7278 2.2485 44 1 12.1348 -1.6887 1.4940 45 1 11.4268 0.2683 2.9452 46 1 10.1027 -0.7699 3.7004 47 1 3.6559 1.0175 2.1396 48 1 3.8929 -0.4829 1.2069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413503765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:10 Heat of formation + Delta-G solvation = -98.097216 kcal Electronic energy + Delta-G solvation = -29599.305980 eV Core-core repulsion = 25654.939004 eV Total energy + Delta-G solvation = -3944.366976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18049 -41.03101 -39.10573 -38.25610 -37.48544 -35.20431 -34.27136 -33.91504 -32.79637 -28.74911 -28.55682 -27.74901 -27.23515 -25.81889 -24.83482 -22.97414 -22.83137 -21.10420 -21.00677 -19.80842 -19.21469 -18.50064 -18.05916 -17.60062 -17.46039 -16.92948 -16.70021 -16.23445 -15.72105 -15.63802 -15.34555 -15.00736 -14.90797 -14.74188 -14.41180 -14.19177 -14.13148 -13.68321 -13.57428 -13.46789 -13.23151 -12.92626 -12.90410 -12.82363 -12.53677 -12.36332 -12.23247 -12.05210 -12.00562 -11.98390 -11.81848 -11.56727 -11.49008 -11.42223 -10.97161 -10.79206 -10.64361 -10.12439 -9.86057 -9.25426 -7.88477 -6.14771 0.99393 1.43803 1.50859 1.58123 1.58735 1.92398 2.40520 2.46299 3.02476 3.29652 3.41870 3.59365 3.64514 3.71892 3.92116 4.04760 4.07716 4.27653 4.31481 4.31965 4.44103 4.49305 4.58119 4.59436 4.65555 4.67260 4.71681 4.77631 4.82923 4.86747 4.87492 4.98690 4.99647 5.07594 5.10187 5.16924 5.28871 5.33370 5.39790 5.56705 5.62125 5.65703 5.98456 6.03936 6.15236 6.43599 6.61350 6.86685 7.31592 7.50355 7.84206 8.97293 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.003953 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.145046 B = 7081.592439 C = 7804.832104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.482 3.518 4 O -0.522 6.522 5 C -0.062 4.062 6 C -0.132 4.132 7 C -0.089 4.089 8 C -0.130 4.130 9 C 0.105 3.895 10 N -0.626 5.626 11 C 0.701 3.299 12 O -0.646 6.646 13 N -0.696 5.696 14 C 0.196 3.804 15 C 0.011 3.989 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.042 3.958 19 N -0.886 5.886 20 Si 0.944 3.056 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.279 1.279 24 C -0.200 4.200 25 C -0.188 4.188 26 C 0.150 3.850 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.400 0.600 40 H 0.010 0.990 41 H 0.075 0.925 42 H 0.256 0.744 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 7.742 1.911 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.325 3.675 4 O -0.411 6.411 5 C -0.064 4.064 6 C -0.189 4.189 7 C -0.126 4.126 8 C -0.168 4.168 9 C -0.018 4.018 10 N -0.363 5.363 11 C 0.403 3.597 12 O -0.530 6.530 13 N -0.349 5.349 14 C 0.072 3.928 15 C 0.010 3.990 16 C -0.541 4.541 17 H 0.076 0.924 18 C -0.160 4.160 19 N -0.523 5.523 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.238 4.238 25 C -0.225 4.225 26 C 0.026 3.974 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.238 0.762 40 H 0.028 0.972 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.346 7.185 1.876 15.273 hybrid contribution 0.436 0.430 -0.960 1.139 sum -12.910 7.615 0.916 15.017 Atomic orbital electron populations 1.23588 0.74563 1.05693 1.02811 1.86565 1.25238 1.32850 1.83279 1.23544 0.91433 0.81294 0.71227 1.90626 1.67336 1.36851 1.46314 1.20953 0.86500 1.00184 0.98808 1.21764 1.01763 1.00234 0.95185 1.21416 0.95800 0.91153 1.04267 1.21974 0.94530 1.02603 0.97740 1.21888 0.99075 0.81229 0.99561 1.47066 1.05308 1.05920 1.78009 1.15991 0.81983 0.83834 0.77902 1.90791 1.77059 1.24553 1.60551 1.44842 1.02934 1.10946 1.76150 1.20584 0.86965 0.86821 0.98452 1.19278 0.89759 0.97752 0.92173 1.20700 1.26228 1.13234 0.93902 0.92410 1.25512 0.93849 0.96461 1.00196 1.70085 1.29125 1.33020 1.20040 0.85728 0.78257 0.79261 0.79673 1.19254 1.21787 1.20479 1.22961 1.00869 0.93769 1.06233 1.22932 1.04684 1.00104 0.94810 1.21240 0.79326 1.01495 0.95327 0.91449 0.85481 0.91609 0.91012 0.91931 0.92395 0.90329 0.89847 0.92362 0.87402 0.90335 0.88826 0.76239 0.97172 0.90670 0.93396 0.90815 0.90331 0.89720 0.90151 0.90064 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.81 10.40 -51.40 -0.53 -9.34 16 3 C 0.48 12.38 6.56 71.24 0.47 12.84 16 4 O -0.52 -14.66 15.73 21.99 0.35 -14.32 16 5 C -0.06 -1.58 0.71 -52.85 -0.04 -1.62 16 6 C -0.13 -3.69 7.92 71.98 0.57 -3.12 16 7 C -0.09 -1.91 4.01 30.62 0.12 -1.79 16 8 C -0.13 -2.84 5.74 30.67 0.18 -2.67 16 9 C 0.10 2.62 6.43 86.36 0.56 3.18 16 10 N -0.63 -20.16 2.41 -836.91 -2.02 -22.18 16 11 C 0.70 29.64 8.30 179.06 1.49 31.12 16 12 O -0.65 -32.27 15.76 -4.01 -0.06 -32.33 16 13 N -0.70 -29.82 5.07 -478.52 -2.43 -32.25 16 14 C 0.20 9.40 4.62 86.38 0.40 9.80 16 15 C 0.01 0.51 2.06 -52.93 -0.11 0.40 16 16 C -0.50 -24.43 8.31 25.60 0.21 -24.22 16 17 H 0.06 2.79 7.82 -2.91 -0.02 2.77 16 18 C 0.04 2.04 5.31 84.65 0.45 2.49 16 19 N -0.89 -46.03 10.17 21.45 0.22 -45.81 16 20 Si 0.94 39.36 29.54 68.60 2.03 41.39 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 22 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 24 C -0.20 -8.45 9.96 30.62 0.30 -8.15 16 25 C -0.19 -7.44 9.93 30.62 0.30 -7.14 16 26 C 0.15 4.34 5.03 86.37 0.43 4.77 16 27 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 28 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.03 5.97 -2.39 -0.01 2.02 16 32 H 0.06 1.73 8.11 -2.39 -0.02 1.71 16 33 H 0.08 1.64 8.07 -2.38 -0.02 1.62 16 34 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 35 H 0.06 1.53 6.34 -2.39 -0.02 1.51 16 36 H 0.11 1.78 8.14 -2.38 -0.02 1.77 16 37 H 0.08 2.15 5.56 -2.39 -0.01 2.14 16 38 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 39 H 0.40 16.08 5.40 -92.71 -0.50 15.58 16 40 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 41 H 0.08 4.16 5.90 -2.38 -0.01 4.15 16 42 H 0.26 13.10 8.32 -92.71 -0.77 12.33 16 43 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 46 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 47 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.08 2.77 7.03 -2.39 -0.02 2.75 16 Total: -1.00 -62.70 380.08 4.54 -58.16 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.46 Total: 39.14 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.53 Total: 17.54 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -4.23 Total: -100.24 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -0.25 Total: -55.99 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -62.70 4.54 -58.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413503765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.934 kcal (2) G-P(sol) polarization free energy of solvation -62.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds