Wall clock time and date at job start Tue Mar 31 2020 15:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47095 * 120.00417 * 2 1 4 4 O 1.21623 * 120.00114 * 282.83421 * 3 2 1 5 5 N 1.34781 * 120.00415 * 102.83331 * 3 2 1 6 6 C 1.46499 * 119.99534 * 5.22395 * 5 3 2 7 7 C 1.46493 * 120.00102 * 185.22367 * 5 3 2 8 8 C 1.50703 * 109.47511 * 90.00026 * 7 5 3 9 9 H 1.08003 * 119.99269 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00406 * 180.02562 * 8 7 5 11 11 N 1.31510 * 119.99888 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99924 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47147 * 89.99759 * 12 10 8 14 14 H 1.48503 * 109.46891 * 209.99788 * 12 10 8 15 15 H 1.48492 * 109.47262 * 329.99542 * 12 10 8 16 16 C 1.32997 * 119.99819 * 179.97438 * 2 1 3 17 17 C 1.51274 * 137.67638 * 0.02562 * 16 2 1 18 18 N 1.47124 * 87.70051 * 205.76021 * 17 16 2 19 19 C 1.34779 * 136.18168 * 153.52922 * 18 17 16 20 20 O 1.21502 * 120.00424 * 359.97438 * 19 18 17 21 21 O 1.34645 * 119.99551 * 180.02562 * 19 18 17 22 22 C 1.45198 * 117.00100 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.46862 * 59.99878 * 22 21 19 24 24 C 1.52992 * 109.47472 * 180.02562 * 22 21 19 25 25 C 1.53009 * 109.47055 * 300.00533 * 22 21 19 26 26 C 1.47115 * 87.62891 * 333.55172 * 18 17 16 27 27 H 1.08991 * 109.47546 * 264.94346 * 1 2 3 28 28 H 1.09003 * 109.46931 * 24.94356 * 1 2 3 29 29 H 1.08998 * 109.47223 * 144.93981 * 1 2 3 30 30 H 1.09002 * 109.47203 * 84.80942 * 6 5 3 31 31 H 1.08999 * 109.46797 * 204.80419 * 6 5 3 32 32 H 1.09001 * 109.47393 * 324.80367 * 6 5 3 33 33 H 1.09003 * 109.46999 * 210.00072 * 7 5 3 34 34 H 1.09009 * 109.47504 * 329.99778 * 7 5 3 35 35 H 0.97001 * 120.00381 * 179.97438 * 11 10 8 36 36 H 1.09002 * 113.51801 * 91.05374 * 17 16 2 37 37 H 1.09009 * 113.51331 * 320.46836 * 17 16 2 38 38 H 1.08997 * 109.46966 * 60.00334 * 23 22 21 39 39 H 1.08998 * 109.47306 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47506 * 299.99890 * 23 22 21 41 41 H 1.08998 * 109.47278 * 59.99976 * 24 22 21 42 42 H 1.09005 * 109.47451 * 180.02562 * 24 22 21 43 43 H 1.09007 * 109.47040 * 300.00014 * 24 22 21 44 44 H 1.08996 * 109.47064 * 59.99511 * 25 22 21 45 45 H 1.08998 * 109.46893 * 180.02562 * 25 22 21 46 46 H 1.09006 * 109.46500 * 299.99550 * 25 22 21 47 47 H 1.08998 * 113.51885 * 141.15443 * 26 18 17 48 48 H 1.09004 * 113.51443 * 271.74111 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 2.3440 1.9175 -1.0270 5 7 2.8041 1.7279 1.1380 6 6 2.7811 0.9005 2.3468 7 6 3.4373 3.0485 1.1662 8 6 2.4162 4.0872 1.5532 9 1 1.3973 3.7928 1.7573 10 6 2.7825 5.4132 1.6456 11 7 4.0231 5.7716 1.3966 12 14 1.5169 6.7004 2.1260 13 1 1.5067 6.8575 3.6026 14 1 1.8652 7.9975 1.4925 15 1 0.1729 6.2694 1.6648 16 6 2.1719 -1.1518 0.0005 17 6 1.8490 -2.6297 0.0007 18 7 3.1548 -2.8545 0.6402 19 6 3.6925 -3.7863 1.4521 20 8 3.0234 -4.7320 1.8185 21 8 4.9709 -3.6686 1.8580 22 6 5.4835 -4.7087 2.7319 23 6 5.4011 -6.0600 2.0191 24 6 6.9409 -4.4057 3.0850 25 6 4.6480 -4.7560 4.0129 26 6 3.6132 -1.6112 0.0011 27 1 -0.3634 -0.0906 1.0235 28 1 -0.3633 0.9318 -0.4334 29 1 -0.3633 -0.8412 -0.5903 30 1 3.6218 0.2070 2.3285 31 1 2.8569 1.5400 3.2262 32 1 1.8476 0.3391 2.3852 33 1 4.2482 3.0472 1.8946 34 1 3.8362 3.2814 0.1788 35 1 4.2807 6.7045 1.4612 36 1 1.7745 -3.0588 -0.9985 37 1 1.0027 -2.8898 0.6367 38 1 5.9963 -6.0262 1.1066 39 1 5.7855 -6.8409 2.6753 40 1 4.3626 -6.2757 1.7679 41 1 6.9992 -3.4431 3.5929 42 1 7.3259 -5.1868 3.7407 43 1 7.5363 -4.3717 2.1726 44 1 3.6096 -4.9717 3.7616 45 1 5.0331 -5.5365 4.6691 46 1 4.7067 -3.7933 4.5206 47 1 4.2614 -1.0086 0.6372 48 1 4.0223 -1.7611 -0.9981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495564042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:57 Heat of formation + Delta-G solvation = -51.040710 kcal Electronic energy + Delta-G solvation = -28360.009930 eV Core-core repulsion = 24417.683477 eV Total energy + Delta-G solvation = -3942.326452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04636 -39.82854 -38.67438 -36.68961 -34.85162 -34.28834 -33.54541 -32.47624 -29.06584 -28.02224 -27.63806 -27.59713 -26.60595 -25.98326 -24.98146 -23.22054 -21.93570 -20.12474 -19.41484 -18.01289 -17.45101 -16.87786 -16.55126 -16.52926 -15.94523 -15.56453 -15.19295 -14.99498 -14.70926 -14.32747 -14.27875 -14.19858 -13.54670 -13.27431 -13.12934 -13.02274 -12.71111 -12.54650 -12.42866 -12.16357 -12.12902 -12.11367 -12.02797 -11.97040 -11.85922 -11.68156 -11.47514 -11.24082 -10.95798 -10.87270 -10.61337 -10.56273 -10.24242 -10.19701 -9.67617 -9.21927 -9.12878 -8.76499 -8.46542 -7.71842 -6.07685 -4.12952 1.45206 1.98693 2.72353 3.21645 3.28333 3.35202 3.39506 3.59537 3.76957 4.17045 4.40823 4.48236 4.53044 4.54001 4.66847 4.92397 5.13802 5.16511 5.23538 5.26856 5.27365 5.30507 5.34332 5.44699 5.45982 5.52540 5.56164 5.62352 5.62503 5.66204 5.72146 5.77325 5.79765 5.92913 6.04495 6.09351 6.11921 6.21388 6.31396 6.56430 6.99857 7.38873 7.46993 7.50257 7.88225 8.15945 8.18563 8.30990 8.82116 8.98046 9.52301 11.00435 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002932 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.511189 B = 9548.452958 C =10483.936065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.072 4.072 3 C 0.545 3.455 4 O -0.533 6.533 5 N -0.592 5.592 6 C 0.087 3.913 7 C 0.244 3.756 8 C -0.529 4.529 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.899 3.101 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.174 4.174 17 C 0.175 3.825 18 N -0.632 5.632 19 C 0.688 3.312 20 O -0.569 6.569 21 O -0.358 6.358 22 C 0.135 3.865 23 C -0.183 4.183 24 C -0.141 4.141 25 C -0.184 4.184 26 C 0.141 3.859 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.090 0.910 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -22.354 2.170 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.076 4.076 3 C 0.331 3.669 4 O -0.411 6.411 5 N -0.323 5.323 6 C -0.057 4.057 7 C 0.125 3.875 8 C -0.568 4.568 9 H 0.076 0.924 10 C -0.141 4.141 11 N -0.532 5.532 12 Si 0.726 3.274 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.176 4.176 17 C 0.054 3.946 18 N -0.374 5.374 19 C 0.445 3.555 20 O -0.458 6.458 21 O -0.273 6.273 22 C 0.099 3.901 23 C -0.240 4.240 24 C -0.198 4.198 25 C -0.241 4.241 26 C 0.019 3.981 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.908 -22.350 1.968 22.455 hybrid contribution -0.508 0.696 0.394 0.947 sum 0.400 -21.654 2.361 21.786 Atomic orbital electron populations 1.20671 0.89035 1.03726 1.02751 1.20783 0.96774 0.91516 0.98568 1.18129 0.79746 0.84645 0.84366 1.90809 1.60201 1.58224 1.31892 1.48173 1.55674 1.19631 1.08855 1.21622 1.00213 0.94932 0.88961 1.19358 0.92983 0.76247 0.98931 1.21424 0.96347 0.91942 1.47067 0.92377 1.24935 0.95493 0.98414 0.95221 1.69928 1.16828 1.17605 1.48884 0.86485 0.81628 0.80829 0.78423 1.20625 1.21055 1.19853 1.22677 0.96845 0.93430 1.04610 1.21928 0.85054 0.89935 0.97640 1.47832 1.16586 1.24718 1.48222 1.17071 0.80561 0.80048 0.77859 1.90894 1.62512 1.31967 1.60461 1.86344 1.26366 1.51356 1.63248 1.22101 0.93939 0.85556 0.88520 1.22514 1.04970 0.95698 1.00812 1.21864 0.92366 1.03133 1.02471 1.22526 1.02766 1.02683 0.96123 1.22174 0.95115 0.82364 0.98446 0.90442 0.90420 0.90961 0.93929 0.90545 0.92565 0.94825 0.93580 0.92650 0.88212 0.89254 0.92203 0.91122 0.89475 0.91232 0.90121 0.91455 0.89430 0.91158 0.91947 0.89221 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.99 36.00 0.36 -0.89 16 2 C -0.07 -1.07 4.10 -102.85 -0.42 -1.49 16 3 C 0.55 11.10 6.99 -12.67 -0.09 11.01 16 4 O -0.53 -13.24 16.66 5.26 0.09 -13.15 16 5 N -0.59 -12.35 2.86 -184.36 -0.53 -12.88 16 6 C 0.09 1.42 9.90 59.85 0.59 2.01 16 7 C 0.24 6.27 5.18 -5.20 -0.03 6.24 16 8 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 9 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 12 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.17 -2.16 6.46 -100.63 -0.65 -2.81 16 17 C 0.18 1.80 8.54 -10.23 -0.09 1.71 16 18 N -0.63 -7.86 3.70 -197.36 -0.73 -8.59 16 19 C 0.69 9.46 8.27 54.06 0.45 9.91 16 20 O -0.57 -8.58 12.66 -19.27 -0.24 -8.82 16 21 O -0.36 -4.62 9.92 -40.34 -0.40 -5.02 16 22 C 0.14 1.39 1.13 -90.62 -0.10 1.28 16 23 C -0.18 -1.73 8.37 37.16 0.31 -1.41 16 24 C -0.14 -1.11 8.85 37.15 0.33 -0.78 16 25 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 26 C 0.14 1.72 8.56 -10.24 -0.09 1.63 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.04 0.63 7.31 -51.93 -0.38 0.25 16 31 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 32 H 0.06 0.81 6.98 -51.93 -0.36 0.44 16 33 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.05 1.33 7.36 -51.92 -0.38 0.95 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.18 7.31 -51.93 -0.38 0.80 16 48 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -34.05 398.19 -7.62 -41.67 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.99 Total: -1.70 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 0.46 Total: 11.46 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.52 Total: -46.96 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.56 Total: -26.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.05 -7.62 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495564042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.372 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds