Wall clock time and date at job start Tue Mar 31 2020 15:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47095 * 120.00417 * 2 1 4 4 O 1.21623 * 120.00114 * 282.83421 * 3 2 1 5 5 N 1.34781 * 120.00415 * 102.83331 * 3 2 1 6 6 C 1.46499 * 119.99534 * 5.22395 * 5 3 2 7 7 C 1.46493 * 120.00102 * 185.22367 * 5 3 2 8 8 C 1.50703 * 109.47511 * 90.00026 * 7 5 3 9 9 H 1.08003 * 119.99269 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00406 * 180.02562 * 8 7 5 11 11 N 1.31510 * 119.99888 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99924 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47147 * 89.99759 * 12 10 8 14 14 H 1.48503 * 109.46891 * 209.99788 * 12 10 8 15 15 H 1.48492 * 109.47262 * 329.99542 * 12 10 8 16 16 C 1.32997 * 119.99819 * 179.97438 * 2 1 3 17 17 C 1.51274 * 137.67638 * 0.02562 * 16 2 1 18 18 N 1.47124 * 87.70051 * 205.76021 * 17 16 2 19 19 C 1.34779 * 136.18168 * 153.52922 * 18 17 16 20 20 O 1.21502 * 120.00424 * 359.97438 * 19 18 17 21 21 O 1.34645 * 119.99551 * 180.02562 * 19 18 17 22 22 C 1.45198 * 117.00100 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.46862 * 59.99878 * 22 21 19 24 24 C 1.52992 * 109.47472 * 180.02562 * 22 21 19 25 25 C 1.53009 * 109.47055 * 300.00533 * 22 21 19 26 26 C 1.47115 * 87.62891 * 333.55172 * 18 17 16 27 27 H 1.08991 * 109.47546 * 264.94346 * 1 2 3 28 28 H 1.09003 * 109.46931 * 24.94356 * 1 2 3 29 29 H 1.08998 * 109.47223 * 144.93981 * 1 2 3 30 30 H 1.09002 * 109.47203 * 84.80942 * 6 5 3 31 31 H 1.08999 * 109.46797 * 204.80419 * 6 5 3 32 32 H 1.09001 * 109.47393 * 324.80367 * 6 5 3 33 33 H 1.09003 * 109.46999 * 210.00072 * 7 5 3 34 34 H 1.09009 * 109.47504 * 329.99778 * 7 5 3 35 35 H 0.97001 * 120.00381 * 179.97438 * 11 10 8 36 36 H 1.09002 * 113.51801 * 91.05374 * 17 16 2 37 37 H 1.09009 * 113.51331 * 320.46836 * 17 16 2 38 38 H 1.08997 * 109.46966 * 60.00334 * 23 22 21 39 39 H 1.08998 * 109.47306 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47506 * 299.99890 * 23 22 21 41 41 H 1.08998 * 109.47278 * 59.99976 * 24 22 21 42 42 H 1.09005 * 109.47451 * 180.02562 * 24 22 21 43 43 H 1.09007 * 109.47040 * 300.00014 * 24 22 21 44 44 H 1.08996 * 109.47064 * 59.99511 * 25 22 21 45 45 H 1.08998 * 109.46893 * 180.02562 * 25 22 21 46 46 H 1.09006 * 109.46500 * 299.99550 * 25 22 21 47 47 H 1.08998 * 113.51885 * 141.15443 * 26 18 17 48 48 H 1.09004 * 113.51443 * 271.74111 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 2.3440 1.9175 -1.0270 5 7 2.8041 1.7279 1.1380 6 6 2.7811 0.9005 2.3468 7 6 3.4373 3.0485 1.1662 8 6 2.4162 4.0872 1.5532 9 1 1.3973 3.7928 1.7573 10 6 2.7825 5.4132 1.6456 11 7 4.0231 5.7716 1.3966 12 14 1.5169 6.7004 2.1260 13 1 1.5067 6.8575 3.6026 14 1 1.8652 7.9975 1.4925 15 1 0.1729 6.2694 1.6648 16 6 2.1719 -1.1518 0.0005 17 6 1.8490 -2.6297 0.0007 18 7 3.1548 -2.8545 0.6402 19 6 3.6925 -3.7863 1.4521 20 8 3.0234 -4.7320 1.8185 21 8 4.9709 -3.6686 1.8580 22 6 5.4835 -4.7087 2.7319 23 6 5.4011 -6.0600 2.0191 24 6 6.9409 -4.4057 3.0850 25 6 4.6480 -4.7560 4.0129 26 6 3.6132 -1.6112 0.0011 27 1 -0.3634 -0.0906 1.0235 28 1 -0.3633 0.9318 -0.4334 29 1 -0.3633 -0.8412 -0.5903 30 1 3.6218 0.2070 2.3285 31 1 2.8569 1.5400 3.2262 32 1 1.8476 0.3391 2.3852 33 1 4.2482 3.0472 1.8946 34 1 3.8362 3.2814 0.1788 35 1 4.2807 6.7045 1.4612 36 1 1.7745 -3.0588 -0.9985 37 1 1.0027 -2.8898 0.6367 38 1 5.9963 -6.0262 1.1066 39 1 5.7855 -6.8409 2.6753 40 1 4.3626 -6.2757 1.7679 41 1 6.9992 -3.4431 3.5929 42 1 7.3259 -5.1868 3.7407 43 1 7.5363 -4.3717 2.1726 44 1 3.6096 -4.9717 3.7616 45 1 5.0331 -5.5365 4.6691 46 1 4.7067 -3.7933 4.5206 47 1 4.2614 -1.0086 0.6372 48 1 4.0223 -1.7611 -0.9981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495564042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:56 Heat of formation + Delta-G solvation = -72.757109 kcal Electronic energy + Delta-G solvation = -28360.951623 eV Core-core repulsion = 24417.683477 eV Total energy + Delta-G solvation = -3943.268146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.02627 -41.04554 -40.01697 -37.67321 -36.63933 -35.23690 -34.88027 -34.27655 -30.07306 -29.88703 -28.35053 -28.30169 -27.71105 -27.36080 -26.23820 -24.95739 -22.98860 -21.48679 -20.39942 -18.97329 -18.84308 -18.68207 -17.81646 -17.55622 -17.39944 -16.90383 -16.39218 -16.31490 -16.08148 -15.67765 -15.24290 -15.16296 -14.71898 -14.56813 -14.20824 -14.14740 -13.85818 -13.76605 -13.51806 -13.34938 -13.30718 -13.15747 -13.12923 -13.01357 -12.89211 -12.87042 -12.84022 -12.54258 -12.49888 -12.30796 -12.22234 -11.94029 -11.72282 -11.40438 -11.18528 -10.70861 -10.64752 -10.23580 -9.81338 -9.50553 -8.23242 -6.38318 0.41216 1.04521 1.37691 1.40452 1.50598 1.67078 1.70918 2.26307 2.41770 2.70250 3.03509 3.07557 3.40559 3.74938 3.80331 3.94347 3.96188 4.07293 4.30705 4.33514 4.39113 4.50872 4.52741 4.57921 4.62773 4.62973 4.67950 4.74967 4.77364 4.79947 4.82173 4.86836 4.87895 4.88866 4.98707 5.12387 5.16752 5.22806 5.28876 5.32405 5.43442 5.50419 5.54918 5.79121 6.03628 6.51056 6.63005 6.71807 7.16965 7.22609 7.37789 8.84257 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002932 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.511189 B = 9548.452958 C =10483.936065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.092 4.092 3 C 0.541 3.459 4 O -0.591 6.591 5 N -0.599 5.599 6 C 0.088 3.912 7 C 0.258 3.742 8 C -0.545 4.545 9 H 0.056 0.944 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.969 3.031 13 H -0.264 1.264 14 H -0.281 1.281 15 H -0.270 1.270 16 C -0.149 4.149 17 C 0.183 3.817 18 N -0.635 5.635 19 C 0.683 3.317 20 O -0.585 6.585 21 O -0.371 6.371 22 C 0.123 3.877 23 C -0.177 4.177 24 C -0.137 4.137 25 C -0.179 4.179 26 C 0.135 3.865 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.002 0.998 35 H 0.268 0.732 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -24.374 3.151 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.096 4.096 3 C 0.330 3.670 4 O -0.472 6.472 5 N -0.329 5.329 6 C -0.054 4.054 7 C 0.137 3.863 8 C -0.584 4.584 9 H 0.074 0.926 10 C -0.191 4.191 11 N -0.567 5.567 12 Si 0.793 3.207 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.151 4.151 17 C 0.063 3.937 18 N -0.377 5.377 19 C 0.440 3.560 20 O -0.476 6.476 21 O -0.286 6.286 22 C 0.087 3.913 23 C -0.234 4.234 24 C -0.194 4.194 25 C -0.236 4.236 26 C 0.013 3.987 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.114 -24.408 2.980 24.589 hybrid contribution -0.067 1.242 0.091 1.247 sum -0.181 -23.166 3.071 23.369 Atomic orbital electron populations 1.20723 0.86683 1.03997 1.04200 1.20432 0.97826 0.89025 1.02317 1.19015 0.78833 0.86117 0.83028 1.90763 1.62074 1.60615 1.33777 1.48163 1.55372 1.18476 1.10866 1.21780 1.02294 0.94563 0.86769 1.18824 0.92726 0.78834 0.95896 1.21697 0.96515 0.92935 1.47218 0.92587 1.25867 0.97578 1.00686 0.94961 1.70050 1.18772 1.18292 1.49629 0.85394 0.78770 0.77722 0.78821 1.18928 1.20654 1.19491 1.22773 0.97115 0.94153 1.01028 1.22148 0.84650 0.87426 0.99441 1.47901 1.17410 1.24364 1.48037 1.17206 0.80774 0.80074 0.77907 1.90890 1.62972 1.32628 1.61085 1.86353 1.26027 1.52485 1.63692 1.22478 0.95090 0.85474 0.88294 1.22455 1.03609 0.95948 1.01385 1.21897 0.90766 1.03810 1.02959 1.22478 1.01476 1.03264 0.96414 1.22322 0.94951 0.82313 0.99159 0.88919 0.92699 0.87540 0.92278 0.91021 0.89954 0.95814 0.97964 0.92340 0.85140 0.87613 0.92056 0.88800 0.91730 0.91733 0.87571 0.91391 0.91696 0.88791 0.92367 0.90583 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 9.99 71.23 0.71 -1.46 16 2 C -0.09 -2.61 4.10 -18.71 -0.08 -2.69 16 3 C 0.54 22.58 6.99 86.57 0.60 23.19 16 4 O -0.59 -30.80 16.66 -4.11 -0.07 -30.87 16 5 N -0.60 -25.65 2.86 -855.43 -2.44 -28.10 16 6 C 0.09 2.84 9.90 127.77 1.26 4.11 16 7 C 0.26 13.96 5.18 85.64 0.44 14.40 16 8 C -0.55 -31.24 9.39 25.60 0.24 -31.00 16 9 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 10 C 0.01 0.47 5.46 84.65 0.46 0.93 16 11 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 12 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 13 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 C -0.15 -3.38 6.46 -17.24 -0.11 -3.49 16 17 C 0.18 3.11 8.54 82.03 0.70 3.81 16 18 N -0.64 -14.42 3.70 ******* -3.74 -18.16 16 19 C 0.68 17.85 8.27 129.79 1.07 18.93 16 20 O -0.58 -16.91 12.66 19.83 0.25 -16.66 16 21 O -0.37 -9.19 9.92 -55.55 -0.55 -9.74 16 22 C 0.12 2.32 1.13 -10.79 -0.01 2.31 16 23 C -0.18 -3.05 8.37 71.98 0.60 -2.44 16 24 C -0.14 -1.89 8.85 71.98 0.64 -1.25 16 25 C -0.18 -3.30 8.37 71.99 0.60 -2.70 16 26 C 0.13 3.07 8.56 82.03 0.70 3.78 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.45 8.08 -2.39 -0.02 1.43 16 29 H 0.11 1.57 8.10 -2.39 -0.02 1.55 16 30 H 0.06 1.70 7.31 -2.39 -0.02 1.68 16 31 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 32 H 0.08 2.22 6.98 -2.39 -0.02 2.20 16 33 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.00 0.14 7.36 -2.38 -0.02 0.12 16 35 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 44 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.08 1.97 7.31 -2.39 -0.02 1.95 16 48 H 0.12 2.31 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -77.74 398.19 4.55 -73.19 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.94 Total: 13.04 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 7.85 Total: 26.42 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -5.89 Total: -101.87 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.37 Total: -57.27 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -77.74 4.55 -73.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495564042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.435 kcal (2) G-P(sol) polarization free energy of solvation -77.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds