Wall clock time and date at job start Tue Mar 31 2020 13:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99981 * 2 1 4 4 H 1.48495 * 109.47543 * 90.00125 * 3 2 1 5 5 H 1.48508 * 109.46751 * 209.99885 * 3 2 1 6 6 H 1.48492 * 109.46968 * 329.99655 * 3 2 1 7 7 C 1.37877 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99965 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99704 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46553 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46553 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00389 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99471 * 179.97438 * 11 10 9 14 14 C 1.46928 * 120.63345 * 354.58478 * 13 11 10 15 15 C 1.52758 * 109.00915 * 233.58186 * 14 13 11 16 16 C 1.53039 * 109.38481 * 305.59102 * 15 14 13 17 17 C 1.53039 * 109.53755 * 61.23858 * 16 15 14 18 18 C 1.46933 * 120.62750 * 174.86738 * 13 11 10 19 19 H 1.08997 * 109.58121 * 246.15702 * 18 13 11 20 20 C 1.52999 * 109.58696 * 6.43902 * 18 13 11 21 21 O 1.45198 * 109.47364 * 65.60634 * 20 18 13 22 22 C 1.34631 * 117.00420 * 179.97438 * 21 20 18 23 23 O 1.21515 * 119.99676 * 0.02562 * 22 21 20 24 24 N 1.34770 * 120.00563 * 180.02562 * 22 21 20 25 25 C 1.46502 * 120.00479 * 180.02562 * 24 22 21 26 26 C 1.52991 * 117.49934 * 223.74463 * 25 24 22 27 27 C 1.52998 * 117.50085 * 155.08503 * 25 24 22 28 28 H 0.96999 * 120.00026 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47242 * 299.99845 * 9 7 2 30 30 H 1.08998 * 109.47324 * 60.00812 * 9 7 2 31 31 H 1.09001 * 109.47043 * 299.99750 * 10 9 7 32 32 H 1.08992 * 109.47450 * 60.00060 * 10 9 7 33 33 H 1.09002 * 109.58551 * 353.42087 * 14 13 11 34 34 H 1.09005 * 109.58343 * 113.84250 * 14 13 11 35 35 H 1.08997 * 109.56238 * 185.55205 * 15 14 13 36 36 H 1.09006 * 109.38233 * 65.51479 * 15 14 13 37 37 H 1.09000 * 109.45888 * 301.21785 * 16 15 14 38 38 H 1.09001 * 109.45728 * 181.26076 * 16 15 14 39 39 H 1.09000 * 109.49538 * 178.68352 * 17 16 15 40 40 H 1.08997 * 109.52668 * 58.60729 * 17 16 15 41 41 H 1.08995 * 109.46832 * 185.61158 * 20 18 13 42 42 H 1.09004 * 109.47152 * 305.61066 * 20 18 13 43 43 H 0.97002 * 119.99992 * 359.97438 * 24 22 21 44 44 H 1.08995 * 115.54704 * 9.41431 * 25 24 22 45 45 H 1.09001 * 117.50225 * 0.02562 * 26 25 24 46 46 H 1.08999 * 117.49785 * 145.01690 * 26 25 24 47 47 H 1.09003 * 117.50233 * 214.98050 * 27 25 24 48 48 H 1.09005 * 117.49726 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5285 -2.6365 0.0001 12 8 6.1349 -1.5863 0.0005 13 7 6.2024 -3.8038 0.0008 14 6 5.4866 -5.0814 0.1207 15 6 6.0848 -5.8801 1.2774 16 6 7.5943 -6.0220 1.0696 17 6 8.2412 -4.6351 1.0526 18 6 7.6672 -3.8226 -0.1123 19 1 7.9548 -4.2844 -1.0568 20 6 8.2043 -2.3910 -0.0568 21 8 7.9412 -1.8258 1.2545 22 6 8.3544 -0.5627 1.4699 23 8 8.9191 0.0508 0.5860 24 7 8.1419 0.0213 2.6658 25 6 8.5910 1.3960 2.8999 26 6 9.2826 1.6961 4.2312 27 6 7.8616 2.2041 3.9749 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6808 -0.8905 30 1 3.8752 -0.6797 0.8895 31 1 3.6585 -3.1502 0.8903 32 1 3.6578 -3.1506 -0.8896 33 1 4.4312 -4.8919 0.3164 34 1 5.5929 -5.6479 -0.8044 35 1 5.6278 -6.8690 1.3128 36 1 5.8941 -5.3573 2.2147 37 1 7.7847 -6.5232 0.1206 38 1 8.0190 -6.6108 1.8827 39 1 9.3192 -4.7380 0.9280 40 1 8.0308 -4.1234 1.9917 41 1 9.2787 -2.3987 -0.2403 42 1 7.7100 -1.7877 -0.8182 43 1 7.6908 -0.4683 3.3713 44 1 8.9418 1.9324 2.0183 45 1 9.4039 0.8707 4.9327 46 1 10.0882 2.4304 4.2255 47 1 7.7328 3.2724 3.8008 48 1 7.0478 1.7128 4.5083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495953003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:35 Heat of formation + Delta-G solvation = -82.289145 kcal Electronic energy + Delta-G solvation = -29201.943256 eV Core-core repulsion = 25258.261770 eV Total energy + Delta-G solvation = -3943.681486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69034 -39.73582 -37.68489 -37.27934 -35.78124 -33.65118 -32.91768 -32.80456 -32.09195 -30.95865 -27.40290 -26.02304 -24.54488 -23.15011 -22.55523 -22.16359 -21.30426 -20.94254 -20.20183 -18.67531 -18.53756 -17.31388 -16.81403 -16.44032 -16.00835 -15.53744 -15.37241 -15.12550 -14.75980 -14.53214 -14.25893 -14.02670 -13.88379 -13.48778 -13.22734 -13.05120 -12.85703 -12.75579 -12.52113 -12.29746 -11.86207 -11.76722 -11.51185 -11.43663 -11.37735 -11.09553 -10.96486 -10.82209 -10.69567 -10.65932 -10.32755 -10.28945 -10.07439 -9.97583 -9.73344 -9.17385 -8.84392 -8.72495 -8.50713 -8.34444 -6.02985 -4.01401 2.32236 3.07491 3.08533 3.16849 3.37693 3.44608 3.57188 3.81945 4.21299 4.51319 4.54310 4.61201 4.61967 4.70639 4.78390 4.85238 4.93219 5.05926 5.16537 5.28629 5.32861 5.33217 5.44341 5.45973 5.53875 5.61900 5.65642 5.70458 5.77946 5.80310 5.86355 5.89579 5.96197 5.97891 6.09773 6.11700 6.22878 6.45015 6.64012 6.69258 6.76239 7.37935 7.44977 7.55427 7.65282 7.80754 8.50254 8.61402 8.67447 9.00198 9.60566 11.09866 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.007393 B = 0.005686 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.320811 B = 4923.158959 C = 7964.657579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.119 4.119 11 C 0.513 3.487 12 O -0.521 6.521 13 N -0.619 5.619 14 C 0.109 3.891 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.131 4.131 18 C 0.148 3.852 19 H 0.090 0.910 20 C 0.095 3.905 21 O -0.345 6.345 22 C 0.665 3.335 23 O -0.578 6.578 24 N -0.687 5.687 25 C 0.101 3.899 26 C -0.195 4.195 27 C -0.189 4.189 28 H 0.263 0.737 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.105 0.895 43 H 0.405 0.595 44 H 0.140 0.860 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.241 -9.835 6.253 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.186 1.186 6 H -0.215 1.215 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.033 4.033 10 C -0.159 4.159 11 C 0.304 3.696 12 O -0.397 6.397 13 N -0.355 5.355 14 C -0.014 4.014 15 C -0.174 4.174 16 C -0.155 4.155 17 C -0.169 4.169 18 C 0.045 3.955 19 H 0.107 0.893 20 C 0.020 3.980 21 O -0.258 6.258 22 C 0.419 3.581 23 O -0.468 6.468 24 N -0.344 5.344 25 C -0.004 4.004 26 C -0.234 4.234 27 C -0.227 4.227 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.123 0.877 43 H 0.239 0.761 44 H 0.157 0.843 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.667 -8.926 5.709 22.339 hybrid contribution 0.057 0.538 0.383 0.663 sum 19.724 -8.388 6.092 22.282 Atomic orbital electron populations 1.69911 1.06274 1.26929 1.51168 1.24951 0.94669 0.99144 0.94340 0.86818 0.80670 0.83491 0.78695 1.20334 1.18550 1.21463 1.21111 0.89321 0.94485 1.51235 0.90997 1.19343 0.96302 0.90201 0.97501 1.21687 0.88283 1.03061 1.02888 1.21461 0.91390 0.82398 0.74328 1.90621 1.68978 1.31621 1.48472 1.48239 1.05545 1.06713 1.75025 1.21627 0.97407 0.84148 0.98195 1.21854 0.95886 1.00377 0.99332 1.21499 0.95484 0.96646 1.01873 1.21948 0.99585 0.95706 0.99690 1.21337 0.81095 0.94339 0.98766 0.89266 1.23113 0.98434 0.92144 0.84290 1.86155 1.75675 1.26827 1.37128 1.17807 0.76924 0.80835 0.82495 1.90929 1.47316 1.64890 1.43648 1.43841 1.63022 1.14094 1.13402 1.21451 1.02188 0.82308 0.94458 1.23486 0.96122 1.03776 1.00008 1.23443 0.95578 1.00962 1.02705 0.92748 0.95962 0.96460 0.89898 0.89813 0.88849 0.91666 0.90770 0.91317 0.91916 0.91806 0.91198 0.90522 0.92682 0.87686 0.76062 0.84281 0.88514 0.87947 0.87632 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.94 27.47 -169.99 -4.67 18.28 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.26 -6.91 6.54 56.52 0.37 -6.54 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 0.11 3.33 -27.88 -0.09 0.02 16 10 C -0.12 -2.31 4.05 -27.88 -0.11 -2.42 16 11 C 0.51 9.21 7.41 -10.98 -0.08 9.13 16 12 O -0.52 -10.98 9.91 -19.12 -0.19 -11.17 16 13 N -0.62 -8.36 2.98 -165.48 -0.49 -8.86 16 14 C 0.11 1.13 6.30 -3.93 -0.02 1.11 16 15 C -0.14 -1.18 6.06 -26.84 -0.16 -1.34 16 16 C -0.12 -0.93 5.89 -26.69 -0.16 -1.09 16 17 C -0.13 -1.27 5.26 -26.62 -0.14 -1.41 16 18 C 0.15 1.76 3.29 -67.60 -0.22 1.53 16 19 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 20 C 0.09 1.42 4.22 37.16 0.16 1.57 16 21 O -0.35 -5.70 7.25 -48.50 -0.35 -6.06 16 22 C 0.67 11.74 8.21 54.05 0.44 12.18 16 23 O -0.58 -11.81 15.70 -19.28 -0.30 -12.12 16 24 N -0.69 -9.82 5.57 -58.74 -0.33 -10.15 16 25 C 0.10 1.27 6.43 -67.93 -0.44 0.83 16 26 C -0.20 -1.78 10.46 -26.70 -0.28 -2.06 16 27 C -0.19 -1.93 10.46 -26.70 -0.28 -2.20 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.02 0.59 7.16 -51.93 -0.37 0.21 16 30 H 0.02 0.45 7.52 -51.93 -0.39 0.06 16 31 H 0.08 1.50 7.46 -51.93 -0.39 1.11 16 32 H 0.08 1.52 8.12 -51.93 -0.42 1.09 16 33 H 0.09 1.01 5.96 -51.93 -0.31 0.70 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.88 7.36 -51.93 -0.38 0.50 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.92 5.99 -52.06 -0.31 1.61 16 43 H 0.40 4.97 8.94 -40.82 -0.36 4.60 16 44 H 0.14 1.93 7.40 -51.93 -0.38 1.54 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -35.89 380.00 -9.63 -45.53 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.98 Total: 3.62 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.82 Total: 2.51 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.05 Total: -46.32 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.84 Total: -29.34 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.67 Total: 18.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.89 -9.63 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495953003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.762 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds